| Previous changeset 3:5732f959936a (2021-02-15) |
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Commit message:
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/canu commit 9e1d3a4dcabeec3c52e08372753d32d684dbed59" |
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modified:
canu.xml test-data/ecoli_canu_contigs_result1.fa test-data/ecoli_canu_contigs_result2.fa test-data/ecoli_canu_corrected_reads_result1.fa.gz test-data/ecoli_canu_corrected_reads_result2.fa.gz test-data/ecoli_canu_corrected_reads_result3.fa.gz test-data/ecoli_canu_trimmed_reads_result1.fa.gz test-data/ecoli_canu_trimmed_reads_result2.fa.gz test-data/ecoli_canu_unassembled_result1.fa test-data/ecoli_canu_unassembled_result2.fa |
| b |
| diff -r 5732f959936a -r 86f150c8019d canu.xml --- a/canu.xml Mon Feb 15 12:31:26 2021 +0000 +++ b/canu.xml Wed Nov 03 16:10:37 2021 +0000 |
| [ |
| @@ -4,7 +4,7 @@ <xref type="bio.tools">canu</xref> </xrefs> <macros> - <token name="@TOOL_VERSION@">2.1.1</token> + <token name="@TOOL_VERSION@">2.2</token> <token name="@VERSION_SUFFIX@">0</token> </macros> <requirements> @@ -42,7 +42,7 @@ #if $stopOnLowCoverage stopOnLowCoverage=$stopOnLowCoverage #end if - #if $minInputCoverage + #if $minInputCoverage ##and $stage in ["all", "trim-assemble", "assemble"] minInputCoverage=$minInputCoverage #end if contigFilter=' @@ -56,21 +56,25 @@ genomeSize='$genomeSize' minThreads=\${GALAXY_SLOTS:-4} maxThreads=\${GALAXY_SLOTS:-4} - redMemory=\${GALAXY_MEMORY_MB:-4096}M + redMemory=\${GALAXY_MEMORY_MB:-6144}M redThreads=\${GALAXY_SLOTS:-4} obtovlThreads=\${GALAXY_SLOTS:-4} utgovlThreads=\${GALAXY_SLOTS:-4} batThreads=\${GALAXY_SLOTS:-4} - batMemory=\${GALAXY_MEMORY_MB:-4096}M - cormhapMemory=\${GALAXY_MEMORY_MB:-4096}M - obtovlMemory=\${GALAXY_MEMORY_MB:-4096}M - utgovlMemory=\${GALAXY_MEMORY_MB:-4096}M + batMemory=\${GALAXY_MEMORY_MB:-6144}M + cormhapMemory=\${GALAXY_MEMORY_MB:-6144}M + obtovlMemory=\${GALAXY_MEMORY_MB:-6144}M + utgovlMemory=\${GALAXY_MEMORY_MB:-6144}M corThreads=\${GALAXY_SLOTS:-4} - corMemory=\${GALAXY_MEMORY_MB:-4096}M + corMemory=\${GALAXY_MEMORY_MB:-6144}M cnsThreads=\${GALAXY_SLOTS:-4} - cnsMemory=\${GALAXY_MEMORY_MB:-4096}M - oeaMemory=\${GALAXY_MEMORY_MB:-4096}M + cnsMemory=\${GALAXY_MEMORY_MB:-6144}M + oeaMemory=\${GALAXY_MEMORY_MB:-6144}M oeaThreads=\${GALAXY_SLOTS:-4} + merylThreads=\${GALAXY_SLOTS:-4} + merylMemory=\${GALAXY_MEMORY_MB:-6144}M + corovlThreads=\${GALAXY_SLOTS:-4} + corovlMemory=\${GALAXY_MEMORY_MB:-6144}M useGrid=false #for $haplotype in $haplotypes: @@ -165,7 +169,7 @@ <output name="trimmed_reads" ftype="fasta.gz" decompress="True" file="ecoli_canu_trimmed_reads_result1.fa.gz"/> <output name="report"> <assert_contents> - <has_n_lines n="488"/> + <has_n_lines n="486"/> <has_text_matching expression="[UNITIGGING/CONTIGS]"/> <has_text_matching expression="-- Contig sizes based on genome size 20kbp:"/> </assert_contents> @@ -188,7 +192,7 @@ <output name="trimmed_reads" ftype="fasta.gz" decompress="True" file="ecoli_canu_trimmed_reads_result2.fa.gz"/> <output name="report"> <assert_contents> - <has_n_lines n="464"/> + <has_n_lines n="456"/> <has_text_matching expression="[UNITIGGING/CONTIGS]"/> <has_text_matching expression="-- Contig sizes based on genome size 20kbp:"/> </assert_contents> @@ -204,9 +208,9 @@ <output name="corrected_reads" ftype="fasta.gz" decompress="True" file="ecoli_canu_corrected_reads_result3.fa.gz"/> <output name="report"> <assert_contents> - <has_n_lines n="187"/> + <has_n_lines n="189"/> <has_text_matching expression="[TRIMMING/READS]"/> - <has_text_matching expression="-- Found 89 reads."/> + <has_text_matching expression="-- Found 93 reads."/> </assert_contents> </output> </test> @@ -214,14 +218,17 @@ <test expect_num_outputs="2"> <param name="inputs" ftype="fasta" value="ecoli-reads.fasta"/> <param name="technology" value="-nanopore"/> - <param name="genomeSize" value="3.4m"/> + <param name="processing" value="-corrected"/> + <!-- <param name="minInputCoverage" value="1"/> --> + <param name="genomeSize" value="0.01m"/> <param name="stage" value="-trim"/> <param name="minReadLength" value="500"/> <output name="report"> <assert_contents> <has_text_matching expression="[TRIMMING/READS]"/> - <has_n_lines n="6"/> - <has_text_matching expression="Found 0 reads."/> + <has_n_lines n="209"/> + <has_text_matching expression="Found 112 reads."/><!-- before trimming --> + <has_text_matching expression="Found 61 reads."/><!-- after trimming --> </assert_contents> </output> </test> |
| b |
| diff -r 5732f959936a -r 86f150c8019d test-data/ecoli_canu_contigs_result1.fa --- a/test-data/ecoli_canu_contigs_result1.fa Mon Feb 15 12:31:26 2021 +0000 +++ b/test-data/ecoli_canu_contigs_result1.fa Wed Nov 03 16:10:37 2021 +0000 |
| b |
| b'@@ -1,215 +1,157 @@\n->tig00000001 len=15501 reads=77 class=contig suggestRepeat=no suggestBubble=no suggestCircular=no trim=0-15501\n-TGAATCACGCGGGCGGCTAAATCGACGGTAACATCGGAAAATTTTACCAGCGGATCGGGCGCGGTGGTGGCAGAGTGGCGGTGTAATGCGACGCGCAGAC\n-GGGCCCAATTCGCCATGCCAAACGGCTTACTCAGATAATCATCCGCTCCGGCATCCAGCGCGGCGATTTTGTCGCTCTTCGCTGCGTGCGGAAAGCACAA\n-CACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAATCCCATCACCATCGGGCAGGCCGCCGAGATCGAGAATAATCAAATCTGGCTTACGG\n-GTTGCTGCTTCCAGCAAGCCGCGTTGCAGCGTTTCGGCCTCAAAGACGCGCATCCCGTCGCCCTCCAGCGCCGTGCGCAGAAAGCGACGAATAGCCTGTT\n-CATCTTCAACAATCAGAACGTTTGTCACATATCCTCATGAAATTCTTCAGTTCAGGGGCAGTTTGCTGGGGAAGTGTAACACGAAAAACAGGCACCACCT\n-TCCGGTCGGTTGAACGCGGTAATAGTGCCCCGTGTACATCCACTATCGCCCGACAAATTGCCAGTCCAAGCCCTACCCCCGGTACTGCCGACTCTTTATT\n-CCCGCGAGCAAACTTATCAAATATCGTCTGCTCCTGGCCTGGCGGAAGACCGGGGCCGTTATCCCAGACATCCAGTTGTAGATTTTCGCCCTCAACGTGG\n-GCATCGATACCAATTTCGGCCTGCGCACCCGCATATTTCACCGCGTTCTCCAGCAGATTAATCAGCACCCGTTCAAAGAGGGCCCGTCAACGTGGATTAA\n-GGTCAGCGGTTCTGGCAGAGAAAGATTGATGGGCGACGATAAACCCGGTTCCAGCATTTGCAGCGCGCTGCCGACTACTTCTTCCAGCGTTAACCACTCT\n-TTCTTCAAATTAAAGCCGCCGGACTGAATTCGCGCCATATCCAGTAGATTATTCACCAGTCGGGTAGTGTTCAGCACATGCTGACGGATCTCGCTGGCCT\n-GGCGGGCGGGGTGATCCTCGCTTGCCAGATCGAGCGTTAAGATTTCTGCCTGACCAAACAGCACCGTAAGCGGCGTGCGTAAATCATGCGAAAGCGCCGC\n-CAGCAGGCGTTGCGGATCTGTTCACGTTCGCTTGCCATCCGCGCCTGTTCTTCGCTGGCGGTTAGCGTCAGCCGCTCAGGGCATTGGCGACTAACAGCGT\n-AACGTCTCCAGCAGGCGCTGCTGTTCCGGGATCATCAACTGGCGCAGATTCCCGGCTCCACCACCACCAGCCCGTAGGTTTTCGCCGCTTTTAGCGGCAA\n-AATCTGGTACGGTACACCGGGTAACGTGTCGGTGCCCGCGCCCGCAGGCAGGCCTTTATCAAAACTCCACTGCGCGATGGCATCGTCCCACGGCGTCATT\n-CCTTGCGGATGTGTTAACGGCTGCAATTTACCGTTGTCATCGGGCAACAACACCTGACTGCGGGCATGAAACGTGGAGGCAATAAATTGTTCGCTGGTGG\n-CAGCGATATCCTGCGGACTGCGGCCCACCGCCAGAGCTTTCGACATTTCATATAAGTGCCGTGTGCGTTGCTCGCGGTAACGGGCTACCCGCGCCTGATA\n-ACGCACGCCAGCAGTAAGGTTCCCGATCACCAGCCCGACGGTTAACATCACCGCGAAGGTCAGCAGATATTGCACATCAGAGACGGCGAGCGTGCCGCGT\n-GGGGCGATAAAAAGAGATCGAAACTCACTACATTAATGACGGTGGCAACCACTGAAGGCCAGCGTCCATAAAATAGCGCCACCACCACCACGCCAAGCAG\n-ATACAGCATCACCAGGTTGGCGGCATCAAACGCCATCAGCCACTGCATGGCAATTAAGGTGATAACGGCGCATAACGCGGCGGCAACCACGCATCCCTGA\n-ATTTGTACACGCCACTTGTCTTTAAAAGAGCGGTTATCCGGCGCGTTGTTAATCGTGCGGGCGGGTGGTTCATCAAGCGCGACCAGCACCTGATCGAGAT\n-CGGGGCGATGCGCGCCAGTCGGTCAGCAAACGTTTCCCGACGCCACCAGCGGCGCGAGGCCGGGCGACCGAGAATAATCTTGCCGAGATTATGTTCACGG\n-GCATAACGCACTACCGCTTTCTCTTCCGCTGGATCAGAAAGTGTTGCCGTCTCCGCGCCCAGTTCCTGCGCCAGACGTAAGGCGCTGAGAATTGCCCGAC\n-GTTTTTTCCGGTAAGCGGTGCAGGGCAGGGGTTTCAACATACACCGCGTGCCAGACGCTACCCAGCCGTGACGCCAGCCGCGCCGCTGCGCGGACCAGTT\n-TTCGCTGCCGGTGTTATGGCCGATGCATAAAAGGATCGCGTCGCGCGTGTGCCACACTTTCTCTTCGCCAGGATGCCCCGCCAGGCGCGCATTTGCTCAT\n-CAACGCGATCGGCAGTACGGCGCAGTGCCAGTTCGCGCAGGGCGATCAGATTACCTTTGCGGAAAAATGTTCAATGGCGCGCTCCGCCTGCCCGGCAATA\n-TAGACTTTGCCTTCTTTCAGCCGCTGGCGCAGATCGTCCGGGGCAAGTCCACCAGCACCACGTCGTCGGCGGCATCGAAAAGGATCGGGCACGGTTTCCC\n-GTACCTGAATTCCGGTGACGCCGCTGACCACATCATTCAGACTTTCCAGATGCTGAACGTTGACGGTAGTGAAAACATCAATGCCAGCTTCCAGCAGTTC\n-TTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCA\n-TCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCTTTTCGCCCGT\n-GGGTTTCTACCACGCCAACCACAATATCCAGCCCTTGCGCCCGCAGTCGCTGGGCTTCTGCCAGCATCGCCCAGGTCTTCCCGACGCCTGCACAGGCACC\n-GAAGAAAACTTTCAGCTTCCCCGATGCGGCGCGGCAGTTTGTTCCAGCAGACGATCGGGGTCGGGACGTAAGGGTTCGTTATTCATCAAGTTTATCCAGC\n-GCCAGATTGAGTTCAACAATGTTGACAACCGGCTGGCCGATATATTTCACCAGCGGTTGTTGGCTGTATTTTGCGATCAGTTGCGTGAGCTGTTCAACGC\n-TGAGATTACGCGCTTTCGCCACGCGTGGGATTTGCCAGGCCGCCGCTTGCGGGTGATATTATTGTCCAGCCCGCTTGCCGATGCCGTCACCAGTTCAACC\n-GGAACGCTCGCGCTGGCATCCGGGTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCC\n-CGCCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGTAAAATTCTGCCCGATTAATGCCGAACC\n-GCGCACCGTATCACCTTCACGAATCAACGAACCATTGGCCTGCCAGGAAACCACCATTGCCCCAGTACGGTGGTCAGCAGCGGGTAAACGCCGCCAGTAA\n-TCAATAACAGAAAGATAAATGTTGATAATGCCGGACGTAATCCACTCATGGTAAACCTCACCAGACCGCAAACGGTCAGCAGTAAATCAATGACTTTGAT\n-ACCGATAAACGGCACCAGCAGCCCACCCAGACCGTAAATCCATAAGTTACGGCGCAACATGGCAGAAGCGGTAAGCGGTTTATAACTCACGC'..b'GCCTGACGGTGGCGCAG\n+ATGCAAAGCCAGATGGACCCGGTATACACGCCGGCGCGAAAAATTCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTATCAGCACGGAAGG\n+GACAACAGCGTGGTACGCAGAATACGATGAATGGGGTAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAG\n+TATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGGCTGAAAGGGGATG\n+GAATTTTATCAGTATCCGTTGAATCCGATCTCAAATATAGATCCATTAGGATTAGAAACACTAAAATGCATTAAGCCACTGCATTCAATGGGCGGAACTG\n+GTGAAAGAAGCGGTCCAGATATATGGGGAATCCGTTCTATCATCAATATCTTTGTGTCCCAGATGGTAAAGGGACTATACTTGTGGTGGCCAAGACCAAC\n+GGGGAGAATCAAAGGAGATGGTCTATGGGGGCCAGGTAAAGCAAGTAATGATACAAAGAAGCTGCTGGCCGTTGTGACCTCGTTGAAACCGATAATAGTT\n+GTGTGGAGAACTGTTTAAAGGAAGTTTAAAGAGGTAAGGCCGCGTTATTCTGTATTGCCTGATATATTCACACCTATAAATTTAGGGCTATTTAAAACTG\n+CCAAGACTGGTCTAATGATTCTTTAGAAACATGTAAGATGAAGTGCTCCGGAAATAACATTGGACGTTTTATTAGATTTGTATTCACCGGAGTGATGTAA\n+TGAAATATATTATTTTTTATTCAGAGCTATATGGCTGGCTTTATCGCTTTTAATACTATTCTTTTCCATGCATAGACTTTCACTATTAGACTCCACTCGT\n+GATGTGAGCGAGTTAATTAGTCTCATGTCTTATGGAATGATGGTAATATGTTTTCCAACAGGCATAGTATTCTTTATTGCTCTAATATTTATAGGGACTG\n+TATCAGACATTATTGGCGTAAGGATTGATAGTAAGTATATTATGGCGATAATAATATGGCTTTATTTTCTGTCAGGAGGGTATATTCAATGGTTTGTATT\n+AAGTAAGCGCATTATAAACAAATAAATTAAGTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAAC\n+CGCCTGCCCGACCGGAGCTGCACCCGGACAGCACCCTCAGCATGTGGCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCA\n+CGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGTTATCCGCACGGATGATGAGCGCACCCACCGGTACCATTACGACAGTCAGCACCGGCTGG\n+TGCACTACACGCGGACACAATATGCAGAGCCGCTGGTCGAAAGCCGCTATCTTTACGACCCGCTGGGCCGCAGGGTGGCAAAACGGGTGTGGCGACGTGA\n+ACGGGACCTGACGGGCTGGATGTCGCTGTCACGGAAACCGCAAGTGACCTGGTACGGCTGGGACGGCGACCGCCTGACCACGATACAGAACGACAGAACC\n+CGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGA\n+TACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACC\n+GGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAAT\n+CCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAGGGGCAACAGAATGGTGCGCAGAATACGATGAATGGGGCAACCTG\n+CTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATT\n+ATGACCCGCTGCAGGGAGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGATGGAATTTTATCAGTATCCGCTGAATCCGGTTCAGTATATAGATTCA\n+ATGGGACTGGCATCAAAATATGGACACTTAAATAATGGCGGATATGGAGCGAGACCCAACAAACCGCCTACGCCCGATCCAAGTAAATTGCCGGACATAG\n+CGAAACAATTAAGACTGCCATATCCTATTGACCAGGCCAGTAGTGCGCCTAATGTTTTCAAAACATTCTTCAGAGCATTAAGCCCTACGACTACACACTG\n+TATTGCAGGAAGTGGGTAAAACCAAATCTGACTTGTACGCCACAGGATGATTCCCAGTATCCAGGGATGGATACAAAGACAGCAAGTGATTACCTGCCAC\n+AGACAAATTGGCCAACAACTCAATTACCACCAGGATATACTTGTGCAGAACCCTATTTATTCCCAGACATTAATAAACCCGATGGGCCAGCAACAGCAGG\n+GATAGATGATTTGGGTGAAATTTTAGCTAAGATGAAACAGAGAACATCGAGAGGAATAAGAAAATGAAAAGAGTTTTGTTCTTTTTGCTGATGATATTTG\n+TTAGTTTTGGTGTTATAGCTGATTGCGAAATACAAGCTAAAGATCATGATTGTTTTACTATTTTCGCTAAGGGTACTATTTTTCCGCGTTTCCTGTCTTA\n+AATAATAAAGCCATGTGGAGATGGTATCAGAATGAGGACATCGGTGAGTATTATTGGCAAACAGAACTGGGTACATGTAAAAATAATAAATTCACACCAA\n+GCGGGGCGAGACTCTTAATTCGCGTCGGGTCACTACGCCTTAATGAAAATCATGCCATCAAAGGAACGTTGCAGGAGTTGATAAATACAGCAGAAAAACG\n+GCGTTTCTCGGCGATCGGTTTAGAAGTTATATAAGAGCGGGTATCTATCAAAAGAGCAGTGATCCAGTTCAGTTGTTGGCAGTCCTTGATAATTCAATCA\n+TGGTAAAATATTTTAAAGATGAGAAACCAACTTATGCTCGAATGACAGCACATCTCCCGAACAAAATGAGTCTTACGAATGTTTAATAAAGATACAGCAT\n+GAACTAATTCGTAGTGAAGAGAAATAAAATCTCTTCCTGAGAAAACAAATTAATCATTGTGAAAAATTATATAACTCATGGAATAGGTGTTTATTTTGCG\n+TTCCATTTGCAGGAAAGATCACGTAACGCTACTTTTTGTACTAAATAATTCGAATTTAAGTTCAACAATTGAGATACTACTTATTGTCTAAAGCTGTTTT\n+TCATAGCTTATACATGATCAAATACTCCTTACATAAATAAGGTGAACAAATGGAACTTAAAAATTGATGGAACATATTTCTATTACACCCGATTACAGAC\n+AAGCCTGGAAAGTGGTGCATAAATTGTCAGATATTCTACTGTTGACTATTTGTGCCGTTATTTCTGGTGCAGAAGGTTGGGAAGATATAAGAGGATTTCG\n+GGGAAACATCTCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTATTCCTGTTCACGATACCATTGCCAGAGTTGTATCAGGAAAGATCACGTAAC\n+GCTACTTTTTGTACTAAATAATTCGCATTTTATGTTTAAAAATTGAGATATTCCTTATTACCTAAAGCTGTTTTTCATAGCTTATACATGATCAAATACT\n+CCTTACATAAATAAGGTGAACAAATGGAACTTAAAAATTGATGGAACATATTTCTATTATTCCCGATTACAGATAAGCCTGGAAAGTAGAGCATAAATTG\n+T\n' 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| b |
| diff -r 5732f959936a -r 86f150c8019d test-data/ecoli_canu_contigs_result2.fa --- a/test-data/ecoli_canu_contigs_result2.fa Mon Feb 15 12:31:26 2021 +0000 +++ b/test-data/ecoli_canu_contigs_result2.fa Wed Nov 03 16:10:37 2021 +0000 |
| b |
| b'@@ -1,114 +0,0 @@\n->tig00000001 len=11230 reads=14 class=contig suggestRepeat=no suggestBubble=no suggestCircular=no trim=0-11230\n-CCCCGCCAGGCGCGCATTTGCTCATCAACGCGATCGGCAGTACGGCGCAGTGCCAGTTCGCGCAGGGCGATCAGATTACCTTTGCGGAAAAATGTTCAAT\n-GGCGCGCTCCGCCTGCCCGGCAATATAGACTTTGCCTTCTTTCAGCCGCTGGCGCAGATCGTCCGGGGCAAGTCCACCAGCACCACGTCGTCGGCGGCAT\n-CGAAAAGGATCGGGCACGGTTTCCCGTACCTGAATTCCGGTGACGCCGCTGACCACATCATTCAGACTTTCCAGATGCTGAACGCTGACGGTAGTGAAAA\n-CATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAG\n-CGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGC\n-ATGGCGGCGGTATCTTTCGCCCGTGGGTTTCTACCACGCCAACCACAATATCCAGCCCTTTGCCCGCAGTCGCTGGGCTTCTGCCAGCATCGCCCAGGTC\n-TTCCTGACGCCTGCACAGGCACCGAAGAAACTTTCAGCTTCCCCGATGCGGCGCGGCAGTTTGTTCCAGCAGACGATCGGGGTCGGGACGTAAGGGTTCG\n-TTATTCATCAAGTTTATCCAGCGCCAGATTGAGTTCAACAATGTTGACAACCGGCTGGCCGATATATTTCACCAGCGGTTGTTGGCTGTATTTTGCGATC\n-AGTTGCGTGAGCTGTTCAACGCTGAGATTACGCGCTTTCGCCACGCGTGGGATTTGCAGGCCGCCGCTTGCGGGTGATATTATTGTCCAGCCCGCTTGCC\n-GATGCCGTCACCAGTTCAACCGGAACGCTCGCGCTGGCATCCGGGTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGTT\n-ACTGACCGCCAGATTGCTCCCGCCAGAAGCCTGTGGATTATAGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGTAAAATTCT\n-GCCCGATTAATGCCGAACCGCGCACCGTATCACCTTCACGAATCAACGAACCATTGGCCTGCCAGGAAACCACCATTGCCCCAGTACGGTGGTCAGCAGC\n-GGTAAACGCCGCCAGTAATCAATAACAGAAAGATAAATGTTGATAATGCCGGACGTAATCCACTCATGGTAAACCTCACACCAGACCGCAAACGGTCAGC\n-AGTAAATCAATGACTTTGATACCGATAAACGGCACCAGCAGCCCACCCAGACCGTAAATCCATAAGTTACGGCGCAACATGGCAGAAGCGGTAAGCGGTT\n-TATAACTCACGCCTTTAACGCCAGGGGAATCAAAAAGACGATAATCAAGGCGTTGAAAATCACCGCACTGAGGATTGCGGAGTCGGGCGAATGCAGGCAC\n-ATGATGTTCAGCGCATTTAACTGCGGATACGTTGCCGCGAATGCCGCCGGAATAATGGCGAAGTATTTCGCCACATCGTTGGCAATGCTGAAGGTGGTCA\n-GCGAGCCACGGGTCATCAGCATCTGTTTGCCAATGTGCACCACCTCGATCAACTTGGTCGGGTTAGAGTCGAGATCGACCATATTGCCCGCCTTTCGCCG\n-CCTGGGTGCCGGAGTTCATCGCCACCGCGACATCGCCTGCGCCAGCGCCGAGCATCGTTGGTGCCGTCGCCGGTCATCGCTACCAAACGACCTTCCGCCT\n-GATACTGACGGATCAATGCCAGCTTGGCCTCCGGTGTCGCTTCGGCGAGAAAATCATCGACACCCGCTTCCGCAGCAATCGCGGCGGCAGTCAGACGGTT\n-ATCGCCGGTAATCATCACCGTTTTAATGCCCATTTTGCGCAGCTGGGCGAAGCGCTCTTTAATACCGCCTTTGACGATATCTTTCAGCGCAATAACGCCC\n-AGCACACGAGAACCTTCCACCACCACCAGCGGCGTGGCTCCCTGACGCGCAACCTGATCGACTTTTTGATCAACATCGGTAGGGAAGTGACCACCGTTAG\n-CCTCAACATGGCGACGAATGGCATCGACAGAACCTTTACGGATCATGCGGTTGTCGATGTTGATCCCGCTCATCCGGCTTTGCGCAGTAAACGGTACAAA\n-GGTGGCATGGAGCGACTGCACATCGCGCTCGCGCAGGTTAAAACGCTGCTTGGCGAGGATCACAATACTGCGGCCTTCCGGCGTTTCATCAGCCAGCGAA\n-GCCAGTTGTGCGGCGTCAGCCAGCGTTTTCATCCACGCCCTGCGCGGGGATAAACTCCGACGCCTGACGGTTACCGAGTGTGATGGTGCCGGTTTTATCC\n-AGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGACGCCGATCG\n-CTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGACTGCATTACCGCCCCACGCGGAAAACGGCCA\n-CAGCGTGGCGGTTGCCAGTAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCA\n-TCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAGGCAAA\n-ATCGCCGCCGGATTCACGGATCACCGGTGCCGATTCCCCGGTGATGGCGCTTTCATCGACCGATGCACCCCTTCAATAACTTCACCATCGCAGGGGATAA\n-TATCGCCAGCTTCTACCAGTACGATATCGCCTTTACGAAGTTGGTCGGCAGGAACTTTGTCCGCCGCAGCGCCATATTTCGGCTCACGCAGCTTGCGGGC\n-AAAGGCAGTTTTTCACCCTTTCAGACTGTTGGCCTGCGCTTTACTGCGGCCTTCTGCCAGCGCCTCGGCGAAATTAGCGAACAGTACGGTGATCCACAGC\n-CAACCGCTAATGGCCGCGCTAAACAGCGCATTGCCGGGCATCGCACCGCTTGCCATCGCGATGCTAATACAGGTGGTCAGCAGACTGCCGATCCAGACGA\n-TAAACATCACCGGATTGCGCCATTGCGCCTGCGGGTTTAATTTTTTCACCGCTTCTTTCAGCGCCTGAACGACAAGTGTTGGTTCGAATAGCGCCAGTTG\n-TTTACGACTCATATTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAG\n-CAACACGGTGCCGATTAACAGGCCAACAAACAGCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTACTCACCAGCGAACCGGCAA\n-TTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAAAGGC\n-GCTGCCGTTGTTGTTAGCGGCGGATGACACGGCGTACAGCACTTCGCTAAAACCATGCGGGCCAGGGTTGAGCATGGCGCTACGTCCGGCGTCGGTCATC\n-ATCGCCAACGCCGCGCCCATCAGCACCAGCGTCGGGGTAACCAGAATTGCCAGTGCAGTCAGTTTCATCTCGCGTACGTCGATTTTTACCCAGA'..b'GGCCGTCTGATTCAGGAAACTGCCCTGACGGCGATATCACCCGCTACCGTTATGATAATCCACACAGTGACTTACCCTGCGCAACGGAAG\n-ATGCCACCGGCAGCGGAAAACCATGACGTGGAGCCGTTACGGTCAGTTGCTGAGCTTCACTGACTGTTCCGGTTATGTAACCCGCTATGACCATGACCGT\n-TTTGGTCAGGTGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCC\n-ATGAAACGCGGTATGAATACAACGCCGCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGC\n-CATCTGTACCACGCAGGGCGGTCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGCCACACCACCTTC\n-CGTTACGATGTACTCGACCGGCTGATACAGGAAACCGGCTTTGACGGCCGCACACAGCGTTATCACCACGACCTGACCGGCAAACTTATCCGCAGCGAGG\n-ATGAGGGGCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGCGGTGGCAGTATGACGAACG\n-CGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTGCACTATGGTTATGACAGTAAAGGCCGCCTCGCCAGTGAACACCTGACG\n-GTGCATCATCCGCAGACGAATGAACTGCTCTGGCAGCATGAGACCAGACATGCGTACAACGCACAGGGACTGGCGAACCGCTGTATACCGGACAGCCTGC\n-CCGCCGTGGAATGGCTGACCTACGGCAGCGGCTGGCTGTCAGGCATGAAACTCGGCGACACACCGCTGGTGGAGTACACCCGCGACCGCCTGCACCGGGA\n-AACGCTGCGCAGCTTCGGCCGTTATGAACTCACCACCGCTTATACCCCTGCCGGGCAGTTACAGAGCCAGCACCTGAACAGCCTGCTGTCTGACCGCGAT\n-TACACCTGGAACGACAACGGCGAACTCATCCGCATCAGCAGCCCGCGCCAGACCCGGAGTTACAGCTACAGCACCACCGGCAGGCTGACCGGCGTTCACA\n-CCACCGCAGCGAATCTGGATATCCGCATCCCGTATACCACAGACCCGGCAGGTAACCGCCTGCCCGACCGGAGCTGCACCCGGACAGCGCCCTCAGCATG\n-TGGCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACAGAAAACCGACCTCATCCCGGAAGGGTTATCC\n-GCACGGATGATGAGCGCACCCACCGGTACCATTACGACAGTCAGCACCGGCTGGTGCACTACGCGGACACAATATGCAGAGCCGCTGGTCGAAAGTCGCT\n-ATCTTTACGACCCGCTGGGCCGCAGGGTGGCAAAACGGGTATGGCGGCGTGAACGGGACCTGACGGGCTGGATGTCGCTGTCACGGAAACCGCAAGTGAC\n-CTGGTACGGCTGGGACGGCGACCGCCTGACCACGATACAGAACGACAGAACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGG\n-GTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTGGCGAAGACGGTGGCAGTGTGGTGTTCC\n-CGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGAC\n-GGTGGCGCAGATGCAAAGCCAGATGGACCCGGTATACACGCCGGCGCGAAAATTCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTATCAG\n-CACGGAAGGGACAACAGCGTGGTACGCAGAATACGATGAATGGGGTAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCG\n-GGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGGCTGA\n-AAGGGGATGGAATTTTATCAGTATCCGTTGAATCGATCTCAAATATAGATCCATTAGGATTAGAAACACTAAAATGCATTAAGCCACTGCATTCAATGGG\n-CGGAACTGGTGAAAGAAGCGGTCCAGATATATGGGGAATCCGTTCTATCATCAATATCTTTGTGTCCCAGATGGTAAAGGGACTATACTTGTGGTGGCCA\n-AGACCAACGGGGAGAATCAAAGGAGATGGTCTATGGGGGCCAGGTAAAGCAAGTAATGATACAAAGAAGCTGCTGGCCGTTGTGACCTCGTTGAAACCGA\n-TAATAGTTGTGTGGAGAACTGTTTAAAGGAAGTTTAAAGAGGTAAGGCCGCGTTATTCTGTATTGCCTGATATATTCACACCTATAAATTTAGGGCTATT\n-TAAAACTGCCAAGACTGGTCTAATGATTCTTTAGAAACATGTAAGATGAAGTGCTCCGGAAATAACATTGGACGTTTTATTAGATTTGTATTCACCGGAG\n-TGATGTAATGAAATATATTATTTTTTATTCAGAGCTATATGGCTGGCTTTATCGCTTTTAATACTATTCTTTTCCATGCATAGACTTTCACTATTAGACT\n-CCACTCGTGATGTGAGCGAGTTAATTAGTCTCATGTCTTATGGAATGATGGTAATATGTTTTCCAACAGGCATAGTATTCTTTATTGCTCTAATATTTAT\n-AGGGACTGTATCAGACATTATTGGCGTAAGGATTGATAGTAAGTATATTATGGCGATAATAATATGGCTTTATTTTCTGTCAGGAGGGTATATTCAATGG\n-TTTGTATTAAGTAAGCGCATTATAAACAAATAAATTAAGTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGG\n-CAGGTAACCGCCTGCCCGACCGGAGCTGCACCCGGACAGCACCCTCAGCATGTGGCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTAT\n-GACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACGGATGATGAGCGCACCCACCGGTACCATTACGACAGTCAGC\n-ACCGGCTGGTGCACTACACGCGGACACAATATGCAGAGCCGCTGGTCGAAAGCCGCTATCTTTACGACCCGCTGGGCCGCAGGGTGGCAAAACGGGTGTG\n-GCGACGTGAACGGGACCTGACGGGCTGGATGTCGCTGTCACGGAAACCGCAAGTGACCTGGTACGGCTGGGACGGCGACCGCCTGACCACGATACAGAAC\n-GACAGAACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGAAACGCAGCGCCGCAG\n-CCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCC\n-TGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGC\n-GCGAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAGGGGCAACAGAATGGTGCGCAGAATACGATGAATGGG\n-GCAACCTGCTGAATGAAGAGAACCCGCATC\n' |
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| diff -r 5732f959936a -r 86f150c8019d test-data/ecoli_canu_unassembled_result1.fa --- a/test-data/ecoli_canu_unassembled_result1.fa Mon Feb 15 12:31:26 2021 +0000 +++ b/test-data/ecoli_canu_unassembled_result1.fa Wed Nov 03 16:10:37 2021 +0000 |
| b |
| b'@@ -1,173 +1,559 @@\n->tig00000003 len=5660 reads=1 class=unassm suggestRepeat=no suggestBubble=no suggestCircular=no trim=0-5660\n-AGTCCGTCGGTCAGGGAGCATGAACTCTCATCCTCACCGGAGTTGAGCTGGTTGTCAAACGTGCGAGACCATCGCACTGGTGGGCGAGTCGGATCGGTAA\n-GTCAACCTTGCTGGCGATCCTCGCCGGGCTTGATGACGGCAGCAGTGGCGAAGTGAGTCTGGTGGACAACCGCTACATAATATGGACGAAGCGCGGGCAA\n-AGTTGCGCGCGAAGCCGTCGGCTTTGTTTTTCAGTCATTTATGTTAATTCCTACCCTTAACGCGCTGGAAAACGTCGAGCTTCCGGCTGCTGCTGCGCGG\n-TGAGTAGCGCGGAAAGTCGTAACGGGGCGAAAGCGTTGCTCGAACAGTTAGGGCTGGGTAAACGTCTGGATCATCTTCCGGCACAGCTTTCCGGCGGTGA\n-ACAGCAACGAGTGGCGCTGGCACGAGCCTTTAATGGTCGACCTGATGTGCTGTTTGCCGACGACCCACCGGCAACCTTGACCGCCAGACGGGCGATAAAA\n-TTGCCGACCTGCTGTTTCCCTCAACCGTGAACATGGCACCACGTTGATTATGGTGACCCACGACCTGCAACTGGCGGCACGCTGCGACCGCTGCTTACGG\n-CTGGTGAACGGGCAGTTGCAGGAGGAAGCATGATTGCACGTTGGTTCTGGCGCGAATGGCGTTCGCCGTCGCTATTAATTGTCTGGCTGGCGCTAAGCCT\n-GGCGGTGGCCTGCGTGCTGGCGCTGGGCAATATCAGCGATCGCATGGAGAAGGGCTTAAGCCAGCAAAGCCGTGAAGTTTATGGCGGGCGATCGGGCGTT\n-GCGCAGTTCACGCGAAGTGCCGCAAGCGTGGCTGGAGGAAGCGCAAAGCGCGGCCTGAAAGTCGGCAAAGCTGACTTTCGCCACAATGACCTTGCAGGCG\n-ACACACCGCAGCTGGCGAACGTCAAAGCGGTGGATGATATCTACCCGATGTATGGCGATCTGCAAACTAATCCCCTGGCCTGAAACCGCAGGCGGGCAGC\n-GTATTGCTGGCCCCACGCCTGATGGCACTGCTTAACCTGAAAACGGGCGACACCATTGGCGTGGGCGATGCCACCTTGCGGATTGCCGGAGAAGTGATTC\n-AGGAACCGGATTCCGGTTTTAACCCCTTCCAGATGGCTCCGCGTCTGATGATGAATCTGGCGGATGTCGATAAAACCGGAGCCGTGCAGCCGGAGTCGGG\n-TCACCTGGCGTTATAAATTCGGCGGCAACGAGAACCAGCTCGACGGCTATGAGAAATGGTTGTTACCCCTCAGCTTAAACCCGAACAACGCTGGTACGGT\n-CTGGAACAGGACGAAGGGCGCGCTGGGGCGATCGATGGAACGCTCGCAACAGTTCCTGCTGCTTTCGGCGCTTCTGACCTTGCTGCTGGCAGTGGCAGCG\n-GTGGCGGTAGCGATGAATCATTACTGTCGCAGTCGCTACGATCTGGTGGCGATCCTCAAAACGCTGGGGGCAGGGCAGCGCAACTGCGCGTAAGCTAATC\n-GTCGGTCAGTGGTTGATGGTGCTGACGCTTTCAGCCGTTACCGGTGGGGCCATAGGCCTGTTGTTCGAAACGTGTTGATGGTGCTGCTCAAGCCCGTTCT\n-GCCTGCTGCACTACCGCCAGCCAGCCTCTGGCCGTGGCTGTGGGCGCTTGGCACCATGACGGTCATCTCGCTGCTGGTGGGGCTACGACCATATCGCTTG\n-TTGCTGGCAACGCAGCCTTTACGCGTATTACGTAATGATGTGGTAGCGAACGTCTGGCCGCTGAAGTTTTATCTGCCGATTGTCAGTGTGGTGGTTGTGC\n-TGCTGCTCGCCGGATTAATGGGTGGCAGCATGCTGCTTTGGGCGGTGCTGGCGGGCGCGGTAGTACTGGCTTTGCTGTGCGGTGTGCTGGGCTGGATGCT\n-GCTGAATGTACTTCGCCGCATGACGCTGAAATCGCTGCCTCTCTGCGCCTGGCGGTTAGCCGCCTGTTACGTCAGCCGTGGTCAACGTTAAGTCAGCTTT\n-CGGCATTTTCGCTCTCCTTTATGCTGCTGGCACTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGGCAGCAGCAGCTACCTCAAGAAAGCCCGAA\n+>tig00000002 len=3487 reads=1 class=unassm suggestRepeat=no suggestBubble=no suggestCircular=no trim=0-3487\n+CTGGATGCTGCTGAATGTACTTCGCCGCATGACGCTGAAATCGCTGCCTCTGCGCCTGGCGGTTAGCCGCCTGTTACGTCAGCCGTGGTCAACGTTAAGT\n+CAGCTTTCGGCATTTTCGCTCTCCTATGCTGCTGGCACTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGGCAGCAGCATACTCCAGAGCCCGAA\n CTACTTTTTAATTAACATCGCCACAGAACAGGTAGCACCGCTAAAGCGTTCCTCGCGGAACATCAGATAGTCCCGGAATCGTTTTATCCGGTGGTGCGGG\n CGCGGCTGACGGCGATTAACGATAAGCCGACAGAAGGTAATGAAGATGAGGCGCTTAACCGCGAACTCAATCTTACCTGGCAAAATACGCGGCCCGATCA\n-TAATCCGATTGTCGCCGGTAACTGGCCGCCAAAAGCCGATGAAGTGTCGATGGAAGAGGGGCTGGCGAAACGCTTAAACGTTGCCCTCGGTGATACCGTG\n-ACTTTTATGGGCGATACCCAGGAGTTCCGCGCTAAAGTGACCAGCCTGCGCAAAGTGGACTGGGAAAGTCTGCGGCCTAATTTCTATTTTATTTTCCCTG\n-AAGGGCATTAGACGGGCAACCGCAGAGCTGGCTTACCAGTTTCCGCTGGGAGAATGGCAACGGCATGTTGACACAACTCAACCGCCAGTTCCCGACCATT\n-AGCCTGTTAGATATTGGCGCGATTTTAAAACAGGTCGGTCAGGTGCTGGAGCAGGTAAGTCGGGCGCTGGAAGTGATGGTGGTACTGGTCACCGCCTGCG\n-GTATGTTGCTGTTGCTGGCACAGGTGCAGGTGGGAATGCGTCAGCGTCATCAGGAGCTGGTGGTGTGGCGCACACTCGGTGCGGGAAAAACTGCTGCGTA\n-CCACGTTGTGGTGTGAGTTCGCCATGCTTGGGTTTGTTTCCGGCCTGGTGGCCGCAATTGGTGCGGAAACGGCGCTGGCAGTGTGTGCAGGCGAAAGTGT\n-TTGATTTTCCGTGGGAGCCAGACTGGCGATTGTGGATTGTTCTGCCGTGCAGCGGGCGCTGCTGCTGTCGCTTTCGGCGGCTGGCTGGGTGCGCGACTGG\n-TTAAGGGTAAGGCGCTGTTCAGGCAGTTTGCGGGGTGATGAAGTAAATAAGGGCGTTCTGGTTGAATGGAACGCCTTGTTTAAATTAATTCTACAATATG\n-TTTCATTGATGATGTTATTGAATTGGTGATTTCCTATCTTTCTATTGCTGATATTAATCTGAATCGGTGGAGTTTATTGATTTTAAATATAGCCCTACAA\n-AAATAACTCAGACTAATAAAATCATAAATCATATGCGTTGAATGGATATTATCCATATAGTGAATTTGTTGATGATGAATTCATCTGTGCTAAAAATGTT\n-AGTTTAATAAAATATTGAAAGTGACCTGTAATAACAGTTGTTGTTGATTGAGAACAAATAAGTTATATGTGAAAAATATATAAATACATTAGCTGGTCTT\n-GTGTGTCATTTTATTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAGGGCACTTTATGAGCGGAAAACCAGCGGCGCGTCAG'..b'TACGGTCCGATTCATCGTAGTACCAGAGGATGACAAGTCCTCATCCTCACTCTGGTGTGAGTTTTCCGGTCAGGT\n+CATAATGATAACGTTGCGTCCGCCCGTCAAAGCCGCTGCTGTACCAGCCGGTCCAGCGCATCGTAACTGAAGACGCTGTGGCTGCCGTTCTCGTTGGTCA\n+GGCTGATGACACGTCCGGCAGCATCGTAATCCATACTGCGCGTCAGCCCGCCCTGCGTGGTGCTGACCGCCTTTCCCCACGCATCGTACTGTGTCTCGCT\n+CCGGTTGCCGTCCGGGGTGATAACGGCAGTCAGGTCGCCTGCGGCGTTGTATTCATACCGCGTTTCACGGCCCTGTGCGTCTTTCACCGAGGTTAACCGG\n+CCACGGTTGTCATAGCGGCGGTAAAGGCTGATGCCTTCCTCGGTGGACCGCCGTCATCTGGCCGAAGCGGTCGTATTCATAACGGGTCTGGTAGCCCGAG\n+CAGTCGGTGAACGCCAGCAACTGCCCGTAGCGGCTCCAGGTCATCTGCCGGTGCTGCCCGTCGCATCCGTTGTCGTCGCCGGTAACTCACTGTGCGCGTC\n+ATCGTAGCGGTAGCGTACTGTCTCCCCGCTGCGCGATGTCTCCGATACCAGCCTGCCCGGTTCATCATATTCCGGCGGCTCTCCAGCCCGTCCGGGGACA\n+CCACCGCCGTCAGCTGGTTCCGTCGTTATAGTAAAATTTCGTCTCCGCCCGTCCGGTGTGGTGATGTCCGTGATATCGCCGGACACCACATTCAGACCGT\n+ACTCTGTCCTCCGTCCCGCCGCGTCCGTCTGCGCCGTGAGCCTTCCTGCCGCGTCATACCCGCTGCGCGTGACGCTGCCGTCCGCCAGTTCTTTTTCACC\n+ACCCGTTTCAGCCCGGCCCCGCCTTCTGTATGCAGCACCTCACGCCGGTTCAGGCTGTCGGTGACGGTGATGCGGTCCTGCTCATAAAGATAGCGGTAGC\n+TAACCCTGCCGGGTTCAGTTGCTCCACCACCGCCCCGTATCGTCGTAGCGGTAGCGCATCTCCGGCCTTCCCGCGTAACGGTGCGCCACCATCCGGCCCG\n+GGTGCTGCGCGTCATACGAAAGCGCGCACCTGCGTATTGCTGCGGTCATATACCGCCAGCAGTTCACCGGCTTCCGTATGCGTGTACCGCACCAGTGGCG\n+CAGCGGGCAGGCTCTCCGGGTATGCCGGGTCGTGCATCAGCCACACCGCCGAAAGGCGGATACCTGTCGGGGCCGTATTCGGTACCGGGCGGTGTCGGGG\n+AACGCTGAGGCTGAGAGAGGGCGGGAACTGTCAGAAGAAGATAGCGAAGAGGTGTGGGCCTCTTCCGCACGCTGCGCCTGCGTGGTCAGCACCAGACGGA\n+ACTCCCGCCCGGCACCGTCCGTCACGCCGGTGATTTCCCGGCCAGGTCACCGGCGGCCTCACGCCGGTACGTCAGCGTCCGCCCGAAGCGGTCCGCCATC\n+CCGGTAAGCACCCGGTACGGCGGCAGCGGCGCTGGCAGTACGTCCTCAGCACCCGGCACCCGCTCAGACCACCCCAGTATCACCACGGCCCCTGTGCGCT\n+GTTGGTCGCCAGGTAAAGATGCGGAACCGGATATCCGGCAGCGCCCACAACCGCGCCAGCGTATGGCCGTCCGGCTGTGCTGCCTTACCACCGCGCACCA\n+GCCACATTGACTCACTGCGGCTGTACACCGCCTCCCCGGCAGCAGCGGCTCAAAGTGAATGCTCCGCCCGCCGTTGTCGTTGAGTATCAGTCCGTCATCA\n+CGTAGCTGTAAGCGGATATCAGAAGGCGCTTTCCAGCCGGGGCCGAAAACGCCCACCGGTGCAGGCGTCTTCGTCCGGTAGCTGCTGTAGGTGCGGGAGA\n+GAATGAACGGCAGCGGGCCGGGCAGCGCAAGGTCCGTCTCGCCGGGCAGCACCTTCGCCCCCAGCAGCGGATTTACCGGGTTGCCCGAAGTCATCCCGCC\n+CGGACACACCGAGCACGCCACGCCGGTGGGCGCGCCAATCTTGCCGAACCCTGGACAATGGGACCGCCATACTGAGTCATATCTCCCTGACGCGCCGCTG\n+GTTTTCCGCTCATATAAAGTGCCCTTTTAGTTATTGTTCATATCCTGTGTTAGCAACAAAAAATAAAATGACACACAAGACCAGCTAATGTATTTATATA\n+TTTTTCACATAAACTTATTTGTTCTCAATCAACAACAACTTTATTACAGGTCACTTTCAATATTTTATTAAACTAACATTTTTAGCACAGATGAATTCAT\n+CATCAACAAATTCACTATATGGATAATATCCATTCAACGCATATGATTTATGATTTTATTAGTCTGAGTTATTTTTGTAGGGCTATATTTAAAATCAATA\n+AACTCCACCGATTCAGATTAATATCAGCAATAGAAAGATAGAAAATCACCAATTCAATAACATCATCAATGAAACATATTGTAGAATTAATTTAAACAAG\n+GCGTTCCATTCAACCAGAACGCCCCTTATTTACTCATCACCCCAAACTGCCTGAACAGCGCCTTACCCTTAACCAGTCGCGCACCCAGCCGCCGAAAGCG\n+ACAGCAGCAGCGCTCCGCTGCACGGCAGAACAATCCACAATCGCCAGTCTGGCTCCACGGAAAATCAAACACTTTCGCCTGCAACACTGCCAGCGCCGTT\n+TCCGCACCAATTGCGGCCACCAGGCCGGAAACAAACCCAAGCATGGCGAACTCACACCACAACGTGGTACGCAGCAGTTTTTCCCGCACCGAGTGTGCGC\n+CACACCACCAGCTCCTGATGACGCTGACGCATTCCCACCTGCACCTGTGCCAGCAACAGCAACATACCGCAGGCGGTGACCAGTACCACCATCACTTCCA\n+GCGCCCGACTTACCTGCTCCAGCACCTGACCGACCTGTTTTAAAATCGCGCCAATATCTAACAGGCTAATGGTCGGGAACTGGCGGTTGAGTTGTGTCAA\n+CATGCCGTTGCCATTCTCCCAGCGGAAACTGGTAAGCCAGCTCTGCGGTTGCCCGTCTAATGCCCTTCAGGGAAAATAAAATAGAAATTAGGCCGCAGAC\n+TTTCCCAGTCCACTTTGCGCAGGCTGGTCACTTTAGCGCGGAACTCCTGGGTATCGCCCATAAAAGTCACGGTATCACCGAGGGCAACGTTTAAGCGTTT\n+CGCCAGCCCCTCTTCCATCGACACTTCATCGGCTTTTGGCGGCCAGTTACCGGCGACAATCGGATTATGATCGGGCCGCGTATTTTGCCAGGTAAGATTG\n+AGTTCGCGGTTAAGCGCCTCATCTTCATTACCTTCTGTCGGCTTATCGTTAATCGCCGTCAGCCGCGCCCGCACCACCGGATAAAACGATTCCGGGACTA\n+TCTGATGTTCCGCGAGGAACGCTTTTAGCGGTGCTACCTGTTCTGTGGCGATGTTAATTAAAAAGTAGTTCGGGCTTTCTGGGTAGCTGCTGCTGCCAGC\n+GGTCGAGCAGATCGCCACGCAACACCAGCAGCAGTGCCAGCAGCATAAAGGAGAGCGAAAATGCCGAAAGCTGACTTAACGTTGACCACGGCTGACGTAA\n+CAGGCGGCTAACCGCCAGGCGCAGAGCAGCGATTTCAGCGTCATGCGGCGAAGTACATTCAGCAGCATCCAGCCCAGCACACCGCACAGCCCAGTACTAC\n+CGCGCCCGCCAGCACCGCCCAAAGCAGCATGCTGCCACCCATTAATCCGGCGAGCAGCAGCACAACCACCACACTGACAATCGGCAGATAAAACTTCAGC\n+GGCCAGACGTTCGCTACCACATCATTACGTAATACGCGTAAAGGCTGCGTTGCCAGCAACAAGCGATATGGTCGTAGCCCCACCAGCGAGATGACCGTCA\n+TGGTGCCAAGCGCCCAAGCCACGGCCAGAGGCTGGCTGGCGGTAG\n' |
| b |
| diff -r 5732f959936a -r 86f150c8019d test-data/ecoli_canu_unassembled_result2.fa --- a/test-data/ecoli_canu_unassembled_result2.fa Mon Feb 15 12:31:26 2021 +0000 +++ b/test-data/ecoli_canu_unassembled_result2.fa Wed Nov 03 16:10:37 2021 +0000 |
| b |
| b'@@ -1,240 +1,429 @@\n->tig00000002 len=3943 reads=1 class=unassm suggestRepeat=no suggestBubble=no suggestCircular=no trim=0-3943\n-TCTCCCGCCCGTCCGGTGTGGTGATGTCCGTGATATCGCCGGACACCACATTCAGACCGCACTCTGTCCTCCGTCCCCGCGTCCGTCTGCGCCGTGAGCC\n-TTCCTGCCGCGTCATACCCGCTGCGCGTGACGCTGCCGTCCGCCAGTTCTTTTTCACCACCCGTTTCCAGCCCGGCCCCGCCTTCTGTATGCAGCACCTC\n-ACGCCGGTTCAGGCTGTCGGTGACGGTGATGCGGTCCTGCTCATAAAGATAGCGGTAGCTTAACCCTGCCGGGTTCAGTTGCTCCACCACCCGCCCCGTA\n-TCGTCGTAGCGGTAGCGCATCTCCGGCCTTCCCGCGTAACGGTGCGCCACCATCCGGCCCGGGTGCTGCGTCATACGTGAAAGCGCGCACCTGCGTATTG\n-CTGCGGTCATATACCGCCAGCAGTTCACCGGCTTCCGTATGCGTGTACCGCACCAGTGGCGCAGCGGGCAGGCTCTCCGGGTATGCCGGGTCGTGCATCA\n-GCCACACCGCCGAAAGGCGGATACCCTGTCGGGGCCGTATTCGGTACCGGGCAGTGTGTCGAGGAACGCTGAGGCTGAGAGAGGGCGGGAACTGTCAGAA\n-GAAGATAGCGAAGAGGTGGGCCTCTTCCGCACGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCGCCCGGCACCGTCCGTCACGCCGGTGATTTCCC\n-CGGCCAGGTCACCGGCGGCCTCACGCCGGTACGTCAGCGTCCGCCCGAAGCGGTCCGCCATCCCGGTAAGCACCCGGTACGGCGGCAGCGGCGCTGGCAG\n-TACGTCCTCAGCACCCGGCACCCGCTCAGACCACCCCAGTATCCACCACGGCCTGTGCGCTGTTGGTCGCCAGGTAAAGATGCGGGCAACCGGATATCCG\n-GCGGCAGCGCCCCCACAGCCGCGCCAGCGTATGGCCGTCCGGCTGTGCTGCCTTACCACCGCGCACCAGCCACATTGACTCACTGCGGCTGTACACCGCC\n-TCCCGGCAGCAGCGGCTCAAAGTGAATGCTCCGCCCGCCGTTGTCGTTGAGTATCAGTCCGTCATCACGTAGCTGTAAGCGGATATCAGAAGGCGCTTTC\n-AGCCGGGGCCGAAAACGCCCACCGGTGCAGGCGTCTTCGTCCGGTAGCTGCTGTAGGTGCGGGAGAGAATGAACGGCAGCGGGCCGGCAGCGCAAGGTCC\n-GTCTCGCCGGGCAGCACCTTCGCCCCCAGCAGCGGATTTACCGGGTTGCCCGAAGTCATCCCGCCGGACACACCGAGCACGCCACGCCGGTGGGCGCGCC\n-AATTTACACCTGCCGAACCCTGGACAATGGGACCGCCATACTGAGTCATATCTCCTGACGCGCCGCTGGTTTTCCGCTCATATAAAGTGCCCTTTTAGTT\n-ATTGTTCATATCCCTGTGTTAGCAACAAAAAATAAAATGACACACAAGACCAGCTAATGTATTTATATATTTTTCACATAAACTTATTTTGTTCTCAATC\n-AACAACAACTGTTATTACAGGTCACTTTCAATATTTTATTAAACTAACATTTTGCACAGATGAATTCATCATCAGCAAATTCACTATATGGATAATATCC\n-ATTCAACGCATATGATTTATGATTTTATTAGTCTGAGTTATTTTGTAGGGCTATATTTAAAATCAATAAACTCCACCGATTCAGATTAATATCAGCAATA\n-GAAGATAGAAATCACCAATTCAATAACATCATCAATGCGGAAACATATTGTAGAATTAATTTAAACAAGGCGTTCCATTCAACCAGAACGCCCTTATTTA\n-CTCTCATCACCCCGCAAACTGCCTGAACAGCGCCTTACCCTTTAACCAGTCGCGCACCCAGCCAGCCGCCGAAAAGCGACAGCAGCAGCGCTCCGCTGCA\n-CGGCAGAACAATCCACAATCGCCAGTCTGGCTCCCACGGAAAATCAAACACTCGCCTGCAACACTGCCAGCGCCGTTTCCGCACCAATTGCGGCCACCAG\n-GCCGGAAACAAACCCAAGCATGGCGAACTCACACCACAACGTGGTACGCAGCAGTTTTTCCCGCACCGAGTGTGCGCCACACCACCAGCTCCTGATGACG\n-CTGACGCATTCCCACCTGCACCTGTGCCAGCAACAGCAACATACCGCAGGCGGTGACCAGTACCACCATCACTTCCAGCGCCCGACTTACCTGCTCCAGC\n-ACCTGACCGACCTGTTTTAAAATCGCGCCAATATCTAACAGGCTAATGGTCGGGAACTGGCGGTTGAGTTGTGTCAACATGCCGTTGCCATTCTCCCAGC\n-GGAAACTGGTAAGCCAGTTCTGCGGTTGCCCGTCTAATGCCCCTTCAGGGAAAATAAAATAGAAATTAGGCCGCAGACTTTCCCAGTCCACTTTGCGCAG\n-GCTGGTCACTTTAGCGCGGAACTCTGGGTATCGCCCATAAAAGTCACGGTATCACCGAGGGCAACGTTTAAGCGTTTCGCCAGCCCCTCTTCCATCGACA\n-CTTCATCGGCTTTTGGCGGCCAGTTACCGGCGACAATCGGATTATGATCGGGCGCGTATTTTGCCAGGTAAGATTGAGTTCGCGGTTAAGCGCCTCATCT\n-TCATTACCTTCTGTCGGCTTATCGTTAATCGCCGTCAGCCGCGCCCACCACCGGATAAAACGATTCCGGACTATCTGATGTTCCGCGAGGAACGCTTTAG\n-CGGTGCTACCTGTTCTGTGGCGATGTTAATTAAAAGTAGTTCGGGCTTTCTGGAGGTAGCTGCTGCTGCCAGCGGTCGAGCAGATCGCCACGCAACACCA\n-GCAGCAGTGCCAGCAGCATAAAGAGAGCGAAAATGCCGAAAGCTGACTTAACGTTGACCACGGCTGACGTAACAGGCGGCTAACCGCCAGGCGCAGAGGC\n-AGCGATTTCAGCGTCATGCGGCGAAGTACATTCAGCAGCATCCAGCCCAGCACACCGCACAGCAAAGCCAGTACTACCGCGCCCGCCAGCACCGCCCAAA\n-GCAGCATGCTGCCACCCATTAATCCGGCGAGCAGCAGCACAACCACCACACTGACAATCGGCAGATAAAACTTCAGCGGCCAGACGTTCGCTACCACATC\n-ATTACGTAATACGCGTAAAGGCTGCGTTGCCAGCAACAAGCGATATGGTCGTAGCCCCACCAGCAGCGAGATGACCGTCATGGTGCCAAGCGCCCACAGC\n-CACGGCCAGAGGCTGGCTGGCGGTAGTGCAGCAGGCAGAACGGGCTTGAGCAGCACCATCAACACGTTTCGAACAACAGGCCTATGGCCCCACCGGTAAC\n-GGCTGAAAGCGTCAGCACCATCAACCACTGACCGACGATTAGCTTACGCAGTTGCGCTCGCCCTGCCCCCAGCGTTTTGAGGATCGCCACCAGATCGTAG\n-CGACTGCGACAGTAATGATTCATCGCTACCGCCACCGCTGCCACTGCCAGCAGCAGGTCAGAAGCGCCAGCAGCAGGAACTGTTACGAGCGTTCCATCGA\n-TCGCCCCAGCGCGCCTTCGTCCTGTTCCAGACCGTACCAGCGTTGTTCGGGTTTAAGCTGGTAACAACCATTTCATAGCCGTCGAGCTGGTTCTCGTTGC\n-CCGCCGAATTTATAACGCCAGGTGACCCGACTCCCCGGCTGCACGGCTCCGGTTTTATCGACATCCGCCAGATTCATCATCAGACGCGGAGCCATCTGGA\n-AGGGTTAAAACCGGAATCCGGTTCCTGAATCACTTCTCCGGCAATCCGCAAGGTGGCATCGCCCACGCCAATGGTGTCGCCCGTTTTCAGGTTAA'..b'GCAACCTGATCGACTTTTGATCAACATCGGTAGAAGTGACCACC\n-GTTAGCCTCAACATGGCGACGAATGGCATCGACAGAACCTTTACGGATCATGCGGTTGTCGATGTTGATCCCGCTCATCCGGCTTTGCGCAGTAACGGTA\n-CAAAGGTGGCATGGGCGACTGCACATCGCGCTCGCGCAGGTTAAAGCGCTGCTTGGCGAGGATCACAATACTGCGGCCTTCCGGCGTTTCATCAGCCAGC\n-AGAAGCCAGTTGTGCGGCGTCAGCCAGCGTTTTTCATCCACGCCCTGCGCGGGGATAAACTCTGACGCCTGACGGTTACCGAGTGTGATGGTGCGGTTTT\n-ATCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGACGCCG\n-ATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGACTGCATTACCGCCCCACGCGAAAACGG\n-CCACAGCGTGGCGGTTGCCAGTAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTGCGTCGCTGTGCGCCTTCCAC\n-CATCGCGATCATCCGATCCAGAAATGTCTCGCCGGGTTAAACGCTACACTCAATCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAGGCA\n-AAATCGCCGCCGGATCCACGGATCACCGGTGCCGATTCCCCGGTGATGGCGCTTTCATCGACCGATGCCCCCTTCAATAACTTCACCATCGCAGGGGATA\n-ATATCGCCAGCTTCTACCAGTACGATATCGCCTTTACGAAGTTGGTCGGCAGGAACTTTGTCCGCCGCAGCGCCATATTTCGCTCACGCAGCTTGCGGGC\n-AAAGGCAGTTTTTCACCCTTTCAGACTGTTGGCCTGCGCTTTGCGGCCTTCTGCCAGCGCCTCGGCGAAATTAGCGAACAGTACGGTGATCCACAGCCAA\n-CCGCTAATGGCCGCGCTAAACAGCGCATTGCGGGCATCGCACCGCTTGCCATCGCGATGCTAACAGGTGGTCAGCAGACTGCCGATCCAGACGATAAACA\n-TCACCGGATTGCGCCATTGCGCCTGCGGGTTTAATTTTTTCACCGCTTCTTTCAGCGCCTGAACGACAAGTGTTGGTTCGAATAGCGCCAGTTGTTTACG\n-ACTCATATTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGCCACCGACCAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACG\n-GTGCCGATTAACAGGCCAACAAACAGCGGGCCGTGCGTTGGCAGCGATGCCGGAGCTGGCGGCTTGCTCTTTTACTCACCAGCGAACCGGCACTGCCATC\n-ACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGACGGAGTTGGCGCTTAATCCGGCAAAGGCGCTGCC\n-GTTGTTGTTATGGCGGATGACACGGCGTACAGCACTTCGCTAAAACCATGCGGGCCAGGGTTGAGCATGGCGCCTACGTCCGCGTCGGTCATCATCGCCA\n-ACGCCGCGCCCATCAGCACCAGCGTCGGGGTAACCAGAATTGCCAGTGCAGTCAGTTTCATCTCGCGTACGTCGATTTTTTACCCAGATATTCCGGTGTA\n-CGACCAATCATCAGCCCGGCAATAACACCGCCAGCAGGACAAACAGCATCATGCCGTAAAGACCAGAACCGACACCGCCGAACACCACTTCACCAATTTG\n-CATCAGCCACATCGGCACCATGCCACCGAGAGCGGTAAACGAATCATGCATCGCAATCACCGCGCCACAGGAAGCCGCCGTCGTCACGACCGCAAACAGG\n-CTACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCAGATGAGGATTACCCTGAACTTCTGCCC\n-ACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCCACAGCAACATGCGCCCCTGGCGGCGATCGCCCATCACTTCACCAAAGGCAAAGCA\n-CAGCGCCGTTGGGATCAAGAAGATCGCCAGCATCTGCACGAAGTTGGTCAGTGCGGTTGGGTTTTCAAACGGATGCGACGAGTTGGCATTAAAGCCACCG\n-CCGTTAGTACCGAGCATCTTGATCGCTTCCTGAG\n+GGGTATCGCCCATAAAAGTCACGGTATCACCGAGGGCAACGTTTGCGTTTCGCCAGCCCTCTTCCATCGACACTTCATCGGCTTTTGGCGGCCAGTTACC\n+GGCGACAATCGGATTATGATCGGGCCGCGTATTTTGCCAGGTAAGATTGAGTTCGCGGTTAAGCGCCTCATCTTCATTACCTTCTGTCGGCTTATCGTTA\n+ATCGCCGTCAGCCGCGCCGCACCACCGGATAAAACGATTCCGGGACTATCTGATGTTCCGCGAGGAACGCTTTAGCGGTGCTACCTGTTCTGTGGCGATG\n+TTAATTAAAAAGTAGTTCGGGCTTTCTGGAGGTAGCTGCTGCTGCCGCAGCGGTCGAGCAGATCGCCACGCAACACCAGCAGCAGTGCCAGCAGCATAAA\n+GGAGAGCGAAAATGCCGAAAGCTGACTTAACGTTGACCACGGCTGACGTAACAGGCGGCTAACCGCCAGGCGCAGAGGCAGCGATTTCAGCGTCATGCGG\n+CGAAGTACATTCAGCAGCATCCAGCCCAGCACACCGCACAGCAAAGCCAGTACTACCGCGCCCGCCAGCACCGCCCAAAGCAGCATGCTGCCACCCATTA\n+ATCCGGCGAGCAGCAGCACAACCACCACACTGACAATCGGCAGATAAAACTTCAGCGGCCAGACGTTCGCTACCACATCATTACGTAATACGCGTAAGGC\n+TGCGTTGCCAGCAAGCAAGCGATATGGTCGTAGCCCCACCAGCAGCGAGATGACCGTCATGGTGCCAAGCGCCCACGCCACGGCCAGAGGCTGGCTGGCG\n+GTAGTGCAACAGGCAGAACGGGCTTGAGCAGCACCATCAACACGTTTTCGAACAACAGGCCTATGGCCCCACCGGTAACGGCTGAAAGCGTCAGCACCAT\n+CAACCACTGACCGACGATTAGCTTACGCAGTTGCGCTCGCCCTGCCCCCAGCGTTTTGAGGATCGCCACCAGATCGTAGCGACTGCGACAGTAATGATTC\n+ATCGCTACCGCCACCGCTGCCACTGCCAGCAGCAAGGTCAGAAGCGCCAGCAGCAGGAACTGTTGCGAGCGTTCCATCGATCGCCCCAGCGCGCCTTCGT\n+CCTGTTCCAGACCGTACCAGCGTTGTTCGGGTTTAAGCTGGGGTAACAACCATTTCTCATAGCCGTCGAGCTGGTTCTCGTTGCCGCCGAATTTATAACG\n+CCAGGTGACCCGACTCCCCGGCTGCTGGCTCCGGTTTTATCGACATCCGCCAGATTCATCATCAGACGCGGAGCCATCTGGAAGGGTTAAAACCGGAATC\n+CGGTTCCTGAATCACTTCTCCGGCAATCCGCAAGGTGGCATCGCCCACGTCAATGGTGTCGCCCGTTTTCAGGTTAAGCAGTGCCATCAGGCGTGGGGCC\n+AGCAATACGCTGCCCGCCTGCGGTTTCAGGCCAGGGGATTAGTTTGCAGATCGCCATACATCGGGTAGATATCATCCACCGCTTTGACGTTCGCCAGCTG\n+CGGTGTGTCGCCTGCAAAGGTCATTGTGGCGAAAGTCAGCTGCTGCCGACTTTCAGGCCGCGCTTTGCGCTTCCTCCAGCCACGCTTGCGGCACTTCGCG\n+TGAACTGCGCAACGCCCGATCGCCCGCCATAAACTCACGG\n' |