| Previous changeset 1:3fd3be28a04c (2024-03-18) |
|
Commit message:
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit fa7deee70d449c6ec1ae9eb42d01d283e9bee586 |
|
modified:
cmsearch-deoverlap.xml |
| b |
| diff -r 3fd3be28a04c -r 874ad23526a0 cmsearch-deoverlap.xml --- a/cmsearch-deoverlap.xml Mon Mar 18 09:34:56 2024 +0000 +++ b/cmsearch-deoverlap.xml Mon Mar 18 16:32:39 2024 +0000 |
| [ |
| @@ -1,7 +1,11 @@ -<tool id="cmsearch_deoverlap" name="CMsearch deoverlap" version="0.08+galaxy1" profile="21.05"> +<tool id="cmsearch_deoverlap" name="CMsearch deoverlap" version="0.08+galaxy2" profile="21.05"> <description>removes lower scoring overlaps from cmsearch results</description> + <xrefs> + <xref type="bio.tools">cmsearch-deoverlap</xref> + </xrefs> <requirements> <requirement type="package" version="5.26">perl</requirement> + <requirement type="package" version="4.8">sed</requirement> </requirements> <command><![CDATA[ ln -s '$clan_information' clan_info && @@ -13,11 +17,11 @@ #end if #if $dirty: $dirty && - sed 's/[:blank:]+/,/g' cmsearch_matches.sort > cmsearch_matches.sort.tabular && + sed "s/[[:blank:]]\+/\t/g" cmsearch_matches.sort > cmsearch_matches.sort.tabular && mv cmsearch_matches.sort.tabular '$matches_sort' #end if && - sed 's/[:blank:]+/,/g' cmsearch_matches.deoverlapped > cmsearch_matches.deoverlapped.tabular && + sed "s/[[:blank:]]\+/\t/g" cmsearch_matches.deoverlapped > cmsearch_matches.deoverlapped.tabular && mv cmsearch_matches.deoverlapped.tabular '$deoverlapped_matches' ]]></command> |