Galaxy |

Changeset 3:87ddc8ca7859 (2024-10-02)

Previous changeset 2:c97f8a687258 (2024-10-02)

Commit message:
planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/kmc commit 3be367228b531c346c10700f07d57ae44394be36-dirty

modified:
test-data/compact_3_db.kmc_pre
test-data/compact_3_db.kmc_suf
test-data/counters_subtract_sum_db.kmc_pre
test-data/counters_subtract_sum_db.kmc_suf
test-data/dump.txt
test-data/filtered_1.fastq
test-data/filtered_2.fastq
test-data/filtered_kmers1.kmc_pre
test-data/filtered_kmers1.kmc_suf
test-data/filtered_kmers2.kmc_pre
test-data/filtered_kmers2.kmc_suf
test-data/histogram.txt
test-data/intersect_max_db.kmc_pre
test-data/intersect_max_db.kmc_suf
test-data/intersect_min_db.kmc_pre
test-data/intersect_min_db.kmc_suf
test-data/reduce_1_db.kmc_pre
test-data/reduce_1_db.kmc_suf
test-data/sort_1_db.kmc_suf
test-data/sort_2_db.kmc_pre
test-data/sort_2_db.kmc_suf
test-data/union_sum_db.kmc_pre
test-data/union_sum_db.kmc_suf

removed:
test-data/counters_subtract_sum_db.kmc_pre_bk
test-data/counters_subtract_sum_db.kmc_suf_bk
test-data/filtered_1.fastq_old
test-data/filtered_2.fastq_old
test-data/intersect_max_db.kmc_pre_bk
test-data/intersect_max_db.kmc_suf_bk
test-data/intersect_min_db.kmc_pre_bk
test-data/intersect_min_db.kmc_suf_bk
test-data/statistic_27.json_bk

diff -r c97f8a687258 -r 87ddc8ca7859 test-data/compact_3_db.kmc_pre

Binary file test-data/compact_3_db.kmc_pre has changed

diff -r c97f8a687258 -r 87ddc8ca7859 test-data/compact_3_db.kmc_suf

Binary file test-data/compact_3_db.kmc_suf has changed

diff -r c97f8a687258 -r 87ddc8ca7859 test-data/counters_subtract_sum_db.kmc_pre

Binary file test-data/counters_subtract_sum_db.kmc_pre has changed

diff -r c97f8a687258 -r 87ddc8ca7859 test-data/counters_subtract_sum_db.kmc_pre_bk

Binary file test-data/counters_subtract_sum_db.kmc_pre_bk has changed

diff -r c97f8a687258 -r 87ddc8ca7859 test-data/counters_subtract_sum_db.kmc_suf

Binary file test-data/counters_subtract_sum_db.kmc_suf has changed

diff -r c97f8a687258 -r 87ddc8ca7859 test-data/counters_subtract_sum_db.kmc_suf_bk

Binary file test-data/counters_subtract_sum_db.kmc_suf_bk has changed

diff -r c97f8a687258 -r 87ddc8ca7859 test-data/dump.txt
--- a/test-data/dump.txt Wed Oct 02 08:34:43 2024 +0000
+++ b/test-data/dump.txt Wed Oct 02 09:52:40 2024 +0000

b'@@ -1,10385 +1,9532 @@\n-AAAAAAAAAAAAAAAAAAAAAGTAGCG\t4\n-AAAAAAAAAAAAAAAAAAAAGTAGCGA\t15\n-AAAAAAAAAAAAAAAAAAAGTAGCGAA\t14\n-AAAAAAAAAAAAAAAAAAGTAGCGAAC\t14\n-AAAAAAAAAAAAAAAAAGTAGCGAACA\t14\n-AAAAAAAAAAAAAAAAGTAGCGAACAC\t13\n-AAAAAAAAAAAAAAAGTAGCGAACACA\t13\n-AAAAAAAAAAAAAAGTAGCGAACACAT\t12\n-AAAAAAAAAAAAAATTAGCCGGGTGTG\t9\n-AAAAAAAAAAAAAGTAGCGAACACATA\t11\n-AAAAAAAAAAAAATTAGCCGGGTGTGG\t9\n-AAAAAAAAAAAAGTAGCGAACACATAT\t11\n-AAAAAAAAAAAATTAGCCGGGTGTGGT\t9\n-AAAAAAAAAAAGTAGCGAACACATATC\t11\n-AAAAAAAAAAATTAGCCGGGTGTGGTG\t9\n-AAAAAAAAAAGTAGCGAACACATATCC\t11\n-AAAAAAAAAATAACTAAAACGAATATT\t23\n-AAAAAAAAAATTAGCCGGGTGTGGTGG\t9\n-AAAAAAAAAGCTCACCAATTGTCTTTG\t13\n-AAAAAAAAAGTAGCGAACACATATCCT\t10\n-AAAAAAAAATAACTAAAACGAATATTA\t23\n-AAAAAAAAATCCTATGAAAGGGAGAAC\t10\n-AAAAAAAAATTAGCCGGGTGTGGTGGT\t9\n-AAAAAAAAGAATCATAACATGGCCATG\t13\n-AAAAAAAAGCTCACCAATTGTCTTTGC\t12\n-AAAAAAAAGTAGCGAACACATATCCTA\t10\n-AAAAAAAATAAAGAATAGTGGCTCACG\t8\n-AAAAAAAATAAAGAATAGTGGCTCATG\t4\n-AAAAAAAATAACTAAAACGAATATTAG\t23\n-AAAAAAAATCAAATTTGGACATACAGA\t6\n-AAAAAAAATCCTATGAAAGGGAGAACT\t10\n-AAAAAAAATTAGCCGGGTGTGGTGGTG\t9\n-AAAAAAAGAATCATAACATGGCCATGC\t13\n-AAAAAAAGCTCACCAATTGTCTTTGCT\t11\n-AAAAAAAGCTGCATTAGTTATCATGAC\t15\n-AAAAAAAGTAGCGAACACATATCCTAT\t10\n-AAAAAAATAAAGAATAGTGGCTCACGC\t8\n-AAAAAAATAAAGAATAGTGGCTCATGC\t4\n-AAAAAAATAACTAAAACGAATATTAGT\t23\n-AAAAAAATCAAATTTGGACATACAGAC\t12\n-AAAAAAATCCTATGAAAGGGAGAACTC\t10\n-AAAAAAATTAGCCGGGTGTGGTGGTGG\t9\n-AAAAAAATTTAGCTACTCAAGACCAAA\t13\n-AAAAAACACTGCACCCTCAGCATGAGT\t15\n-AAAAAACAGATACAGATAAGAAAAAAT\t8\n-AAAAAACTTACTGATTGTAATTGTTGA\t17\n-AAAAAAGAATCATAACATGGCCATGCT\t13\n-AAAAAAGAGAAGAAATGAATAAGTGAA\t15\n-AAAAAAGCAGTATGAAGTTATATTAGC\t12\n-AAAAAAGCTCACCAATTGTCTTTGCTA\t11\n-AAAAAAGCTGCATTAGTTATCATGACA\t15\n-AAAAAAGGGAAGAAAATAATAAAAGCA\t12\n-AAAAAAGGTACAAGTAAGAAGTAGTAA\t18\n-AAAAAAGTAGCGAACACATATCCTATA\t10\n-AAAAAAGTTCAAACTAAAATTTCTCCT\t15\n-AAAAAATAAAATAAAATACATGTATCT\t7\n-AAAAAATAAAGAATAGTGGCTCACGCC\t8\n-AAAAAATAAAGAATAGTGGCTCATGCC\t4\n-AAAAAATAACTAAAACGAATATTAGTT\t22\n-AAAAAATAATAACAAAAATCAGGGAGA\t12\n-AAAAAATAGGGTAGAATTCCGTGTTCT\t12\n-AAAAAATATGCACAGAAGAAAAAGAAA\t13\n-AAAAAATATTTACAAAGCTATGAAGTA\t15\n-AAAAAATCAAATTTGGACATACAGACA\t12\n-AAAAAATCCTATGAAAGGGAGAACTCA\t10\n-AAAAAATCTGCAGCCATGGTTGTAAAT\t9\n-AAAAAATGACCAAACTGGGTTAAACAT\t20\n-AAAAAATGCTTATTAATATGTCATTTG\t5\n-AAAAAATTAGCCGGGTGTGGTGGTGGG\t9\n-AAAAAATTATTTAGGCAGATAGTGAGG\t21\n-AAAAAATTTAGCTACTCAAGACCAAAA\t13\n-AAAAAATTTGAAATTCTGAACAAAATA\t12\n-AAAAAATTTTTATTTTTCCCCCCACAG\t19\n-AAAAACAAAAAAATTTAGCTACTCAAG\t14\n-AAAAACAATAGCAACAGTCTTCTTCTA\t19\n-AAAAACAATGACAAAATCGTAAATTTC\t6\n-AAAAACACTCATCCAGGTGTTGGTCTG\t16\n-AAAAACACTGCACCCTCAGCATGAGTT\t18\n-AAAAACAGAATTCCCAGGATTGACCCC\t15\n-AAAAACAGAGAGGAACCTGAAACTACC\t15\n-AAAAACAGATACAGATAAGAAAAAATT\t8\n-AAAAACAGTGTGTAGTCTATGCTTCTG\t14\n-AAAAACATGCTATATTCTCACATTAAA\t8\n-AAAAACATGGTATCACAGCACATTCAC\t10\n-AAAAACCAGCCTGTGGCATACTGCACC\t27\n-AAAAACCCATTTGCATAATAAGATTAG\t23\n-AAAAACTAATAAATATACCAACATGGT\t12\n-AAAAACTTACTGATTGTAATTGTTGAA\t17\n-AAAAACTTGGAAAGAACAAATATCAAG\t17\n-AAAAACTTTCAAAGCTTAAACAAATCC\t15\n-AAAAAGAAAAACACTCATCCAGGTGTT\t15\n-AAAAAGAATCATAACATGGCCATGCTG\t13\n-AAAAAGAGAAGAAATGAATAAGTGAAT\t15\n-AAAAAGCAGCCAAATACAAAAAATATG\t17\n-AAAAAGCAGTATGAAGTTATATTAGCC\t12\n-AAAAAGCTCACCAATTGTCTTTGCTAG\t11\n-AAAAAGCTGCATTAGTTATCATGACAG\t16\n-AAAAAGCTTTTAAGATGGTATTTATTT\t12\n-AAAAAGGAACTTCGCTCCTTTCCCTGC\t18\n-AAAAAGGAGAAATTTTAGTTTGAACTT\t17\n-AAAAAGGGAAGAAAATAATAAAAGCAA\t12\n-AAAAAGGTACAAGTAAGAAGTAGTAAA\t19\n-AAAAAGTAAAAATACTTTATGCATTCA\t23\n-AAAAAGTAAAATCAAGAAGATGTGTTA\t17\n-AAAAAGTAAATAGTGAAAAAAGGTACA\t16\n-AAAAAGTAGCGAACACATATCCTATAA\t10\n-AAAAAGTAGCTCGGGAGGCTCAGGCAG\t9\n-AAAAAGTATAAAGAGAACCGGTGAAAT\t8\n-AAAAAGTGTCTCAGAGATGGCATTGTT\t16\n-AAAAAGTTCAAACTAAAATTTCTCCTT\t15\n-AAAAATAAAAACATGCTATATTCTCAC\t8\n-AAAAATAAAAATTTTTTAGAAAGCACT\t16\n-AAAAATAAAATAAAATACATGTATCTA\t7\n-AAAAATAAAGAATAGTGGCTCACGCCT\t8\n-AAAAATAAAGAATAGTGGCTCATGCCT\t4\n-AAAAATAAAGTAGCAAAATATTTTGTT\t18\n-AAAAATAAATAAATAAAAAAGTTCAAA\t18\n-AAAAATAACTAAAACGAATATTAGTTT\t22\n-AAAAATAATAACAAAAATCAGGGAGAA\t12\n-AAAAATAATCTATGACATGCTAGGTGT\t13\n-AAAAATACAAAAAAAAAAAAAATTAGC\t8\n-AAAAATACATCCAAATGTTTAACCCAG\t17\n-AAAAATACTTTATGCATTCATCTCTTC\t22\n-AAAAATAGCACCAAATCAAATAGTTTT\t19\n-AAAAATAGGGTAGAATTCCGTGTTCTT\t12\n-AAAAAT'..b'GTACCAAA\t14\n+TGTTCAATTGAACTTTTAAATCTGCAA\t10\n+TGTTCCCTCTAGACAAGGAGATTAGAA\t8\n+TGTTCTGTCAGAGCTGGCAAGTTAAAA\t9\n+TGTTGACATACTTGTTGAATTTGTTAA\t8\n+TGTTGCACACTACAAATAAATTGGAAA\t9\n+TGTTGGTGTAATATGCATGTCCAAAAA\t10\n+TGTTGTCCTATACCTTAGACTAGCTAA\t5\n+TGTTTATTGCTTTCACCTATAAACCAA\t5\n+TGTTTTCTTTGATTTGAGGGGCATAAA\t9\n+TGTTTTGTTCTTTCTAGGTCATTCAAA\t5\n+TGTTTTTGGTTACTCTTCATTTTCAAA\t8\n+TTAAAACAATAAATATTAGAAATTAAA\t9\n+TTAAAAGCTCAATCTTGGAGAGGAGAA\t6\n+TTAAAATGAATAGAAAATTTTCACAAA\t4\n+TTAAACAAAATTAAGAAGTAACCAAAA\t7\n+TTAAACTCTTTTAGACTCTTCCTTGAA\t6\n+TTAAACTTTGCAGACCAAAACTTTAAA\t7\n+TTAAAGAAACCCAGAGAATTTGCTTAA\t5\n+TTAAATACTTAAATATTTTTAGATCAA\t5\n+TTAAATATTTTTAGATCAAAGCATCAA\t5\n+TTAAATGTTAAGAGAATTGCATTAAAA\t4\n+TTAACCACGTGTAAAATTTTGAACAAA\t8\n+TTAAGCACATACTTCATAGCTTTGTAA\t5\n+TTAATATTGTTTTGTTCATACCCCTAA\t14\n+TTAATGCAATTCTCTTAACATTTAAAA\t4\n+TTAATTAGGAAACAGAAAGTGGGTAAA\t8\n+TTAATTGTATTCATTTTATTTTAGAAA\t8\n+TTAATTTTGTTTAAGGCTCTCACTAAA\t5\n+TTACAATCATGACAGAAGGGGAAGCAA\t8\n+TTACAGTCTTAGTTTAGGCTCCTCCAA\t9\n+TTACATATTTCACAATAAGTCTAAGAA\t7\n+TTACCTCCCACCAGGTCGCAGCTCTAA\t5\n+TTACTGTACACGTAGCTGGCAAAAGAA\t8\n+TTACTTAAATAATAAGGTAGCAATAAA\t3\n+TTAGAAAGCACTGAGATATTCTAAAAA\t8\n+TTAGAATATCTCAGTGCTTTCTAAAAA\t7\n+TTAGACTTCACTGGATAAAAAAGAGAA\t7\n+TTAGAGGCAGTTAAAATGAACTCTGAA\t14\n+TTAGATTTATTTTGGAAAAATATCCAA\t7\n+TTAGCTACTCAAGACCAAAAGTTAGAA\t8\n+TTAGCTACTGCTTTTGAGTTGTGCCAA\t10\n+TTAGGAGTGGAGGTTTACTAGCTAAAA\t11\n+TTAGTAAAGGGTTAGAGGCAGTTAAAA\t15\n+TTAGTGAACCTTGTGAGGCAGGAGCAA\t7\n+TTATAAAACCATCAGATCCCGTGAGAA\t5\n+TTATAATAATTTCTAAATACTTTGCAA\t6\n+TTATAATTAAAACAATAAATATTAGAA\t8\n+TTATACAGCATAGGCGAGTGTTTTAAA\t14\n+TTATCAATCTCATTGGCGTAATTACAA\t9\n+TTATCTGTTGGAGAAGCTGTAAGCAAA\t5\n+TTATGGGAAGAAAATTGCAAATTTCAA\t9\n+TTATGGTGCCAAGTTGGGAAGAAGGAA\t6\n+TTATTACTTCATGAAAGTGAGATAAAA\t3\n+TTATTCATGTGTAGATGACAGTTTGAA\t9\n+TTATTGCTACCTTATTATTTAAGTAAA\t3\n+TTATTGCTTTCACCTATAAACCAAGAA\t5\n+TTATTTCCTAAAACCTTAAAAGTCAAA\t3\n+TTATTTGTAGTAAGGCAAATGGAAAAA\t3\n+TTATTTTTAAATTTTCCCTACTTTCAA\t5\n+TTCAAAATTGTCCACCAGAAAGACAAA\t8\n+TTCAAATAATTTAGTGAGAGCCTTAAA\t5\n+TTCAATACAATCCTCAATATTAGGAAA\t4\n+TTCAATTATTTTGTTCAGAATTTCAAA\t6\n+TTCACTGTGCAGTAGCTGGAAATAGAA\t3\n+TTCACTGTGCTATGCATGTGCTTAGAA\t3\n+TTCACTTTAATCACTTATATTTATAAA\t4\n+TTCAGAATGGCTGAGTAGTTTGCAGAA\t9\n+TTCAGTCCTCTTGGAAGGCTAACAAAA\t13\n+TTCAGTGAGGTCACTAAAAAGGAGAAA\t6\n+TTCATACTGCTTTTTTAATTTAAAGAA\t6\n+TTCATGAAGTAATAAATTTAAAATGAA\t3\n+TTCATTACTAAGATGGAGCCACTCAAA\t5\n+TTCATTATTTCTATTGGTTATCAAAAA\t7\n+TTCATTCATTTCCACTTTTCTTTGGAA\t8\n+TTCATTGGCTTAAGCACATTTATCGAA\t5\n+TTCATTTCCTCTTAATTAAGTTATAAA\t4\n+TTCATTTTAAATTAATGCCATTTGGAA\t5\n+TTCCAGTTTAAAGTTTTGGTCTGCAAA\t6\n+TTCCCAGGATTGACCCCAGTCACAGAA\t6\n+TTCCCATAAATGTCAAAGATCAAACAA\t5\n+TTCCCCAGAAACTTGGGTTGGACACAA\t9\n+TTCCCTACAAGTACATAGTACTTACAA\t7\n+TTCCTAATATTGAGGATTGTATTGAAA\t4\n+TTCCTGCATGTACACTCTTGTGTCCAA\t6\n+TTCCTTTTAATGAAAAGCAGCCCCCAA\t6\n+TTCGCTTCCTAGAAGCAATCACAAGAA\t6\n+TTCTAAAATAAAATGAATACAATTAAA\t8\n+TTCTACCATTGGTCATGTTGGCCGAAA\t6\n+TTCTCCTTGCTACTGCCATGTGAACAA\t7\n+TTCTCTGGGTTTCTTTAAATTAAAAAA\t5\n+TTCTGAGATTATTTTGCAAAGGACAAA\t5\n+TTCTGTTGGTGTAATATGCATGTCCAA\t10\n+TTCTTCCCATAAATGTCAAAGATCAAA\t5\n+TTGAAACTAAAAATAAATAAATAAAAA\t6\n+TTGAAAGTGCAGTTTACACAAGCCAAA\t7\n+TTGAACATATAGTATTGAAAGCAGAAA\t11\n+TTGAATCCTTGAAAATAAACACTAAAA\t8\n+TTGACATTTATGGGAAGAAAATTGCAA\t8\n+TTGAGATGTCGAGAGCGAGCCATCAAA\t6\n+TTGAGGAAGAATTAGGGTTCTCAAAAA\t11\n+TTGATCTTTGACATTTATGGGAAGAAA\t5\n+TTGCACTTCCTGGGATCACCTGTCAAA\t5\n+TTGCATATCTATATAACTAGTAGGAAA\t9\n+TTGCCTTAAAATGAACAAAGGGGTAAA\t11\n+TTGCTGCAGAACAAATGAGGAAAGAAA\t5\n+TTGCTTCAAAATGTCTTAGCCAACCAA\t5\n+TTGGCTTGTGTAAACTGCACTTTCAAA\t7\n+TTGGTAAAGTTTTCCTTTTAATGAAAA\t8\n+TTGGTACTGGCAGTGCTATTTGAACAA\t14\n+TTGTAAATACCGTACATTCCAAAGAAA\t5\n+TTGTAAGTAAATAAATACCATCTTAAA\t8\n+TTGTATTTGAAAGTGCAGTTTACACAA\t7\n+TTGTGAAACTGGGGTTCTTCAATCAAA\t7\n+TTGTTAGCCTTCCAAGAGGACTGAAAA\t13\n+TTGTTCTGTCAGAGCTGGCAAGTTAAA\t9\n+TTGTTGAATTTGTTAAATTTTAAAAAA\t9\n+TTTAAAATGAAATTAAATGAAATAAAA\t3\n+TTTAAATGTTAAGAGAATTGCATTAAA\t4\n+TTTAGAAAGCACTGAGATATTCTAAAA\t8\n+TTTAGAATATCTCAGTGCTTTCTAAAA\t7\n+TTTAGCTAGTAAACCTCCACTCCTAAA\t10\n+TTTATCTCACTTTCATGAAGTAATAAA\t3\n+TTTCAGTCCTCTTGGAAGGCTAACAAA\t13\n+TTTGAGAACCCTAATTCTTCCTCAAAA\t11\n+TTTGAGGAAGAATTAGGGTTCTCAAAA\t11\n+TTTGCTTAAGTGTTTCAAGCTAACAAA\t4\n+TTTTACAGGCTGCTCTTTGTTAGAAAA\t9\n+TTTTAGGAAATAAGGCACTGAGAAAAA\t4\n'

diff -r c97f8a687258 -r 87ddc8ca7859 test-data/filtered_1.fastq
--- a/test-data/filtered_1.fastq Wed Oct 02 08:34:43 2024 +0000
+++ b/test-data/filtered_1.fastq Wed Oct 02 09:52:40 2024 +0000

b'@@ -27,13 +27,13 @@\n +\n ???????????????+?????????????????????????????????????????????????????????????????????????????????????????????????????????????????+?????????????????????\n @A00744:46:HV3C3DSXX:2:1104:20717:31673\n-CTTGAAATACAATTTGTTTTGTTTCTTGTATTTGAAAGTGCAGTTTACACAAGCCAAATAGACACCATATGGCCTTCAGTAATTTGACATTGAAGAGCAATGCATGATTTGTATTCTATTTCCAGCTACTGCACAGTGAATGTGCTGTGAT\n-+\n-???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????\n+CTTGAAATACAATTTGTTTTGTTTCTTGTATTTGAAAGTGCAGTTTACACAAGCCAAATAGACACCATATGGCCTTCAGTAATTTGACATTGAAGAGCAATGCATGATTTGTATTCTATTTCCAGCTACTGCAC\n++\n+??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????\n @A00744:46:HV3C3DSXX:2:1105:22372:6355\n-CCCGGCTAATTTTTTTTTTTTTTGTATTTTTAGTAGAGATAGGGTTTCACTGTGTTAGCCAGGTTGGTCTCGATCTCCCGACCTTGTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGAATTACAGGCATGAGCCACTATTCTTTATTTT\n-+\n-???????????????????5????????????????????????????????????????????????????????????????????????????????????????????????????+??????????????????????????????\n+CCCGGCTAATTTTTTTTTTTTTTGTATTTTTAGTAGAGATAGGGTTTCACTGTGTTAGCCAGGTTGGTCTCGATCTCCCGACCTTGTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGAATTACAGGC\n++\n+???????????????????5????????????????????????????????????????????????????????????????????????????????????????????????????+????????\n @A00744:46:HV3C3DSXX:2:1106:27778:33786\n CCCTGTTTCTCCCTTCCTAGTGGCTCCTCACACAACCCTGGACCAATTGCTCTGACATCAACATGGTCTCCATCTTGCCTTAAAATGAACAAAGGGGTAAAGATTTAAAAATGAGAATCTTGCTGCTAACTGCTCTGAAGGTATTAACCAC\n +\n@@ -139,9 +139,9 @@\n +\n ?????????????????????????????????????????????????????????????????+??????????????????????????????????\n @A00744:46:HV3C3DSXX:2:1122:27326:30686\n-CGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAGTAGCGAACACATATCCTATAAAACATGGATAATATAGAGAAATTCTGAAAGGGT\n-+\n-?????????????????????????????????????????????????????????????????????????????????????????????????????5????5??????5?+??????+??????????????????+??+??????\n+CGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCAC\n++\n+??????????????????????????????????????\n @A00744:46:HV3C3DSXX:2:1123:27642:3677\n TCTGGACTCTTTCGGCTCTGCCCATGCTTCTAGCCCTGGTGAAATCCACTGTGTTTAAGACCTATTTTCATATCTTGTCATCCAGCTTTTCTATCAGAAAGCACTCATTATTTGAGTGGCTCCATCTTAGTAATGAACCAGAGCAATGACT\n +\n@@ -167,13 +167,13 @@\n +\n ???????????????????????????????????????????????????????????????????????????????????????????????????????????5??????5????????????????????????????????????\n @A00744:46:HV3C3DSXX:2:1131:6714:26177\n-CAGGAAAGTATAAATACAAATTTGAAAGTATGATACTAATGTCAGAGAAGTTTGAATTCAAGGAAGAGTCTAAAAGAGTTTAAACACATAAAGATGAAACATTTATAACACGCATTTACTTAAATAATAAGGTAGCAATAAATAACATAGC\n-+\n-???????????????????????????????????????????????????????????????????????????+?????????????????????????+??????????????????????????5??????????????????????\n+CAGGAAAGTATAAATACAAATTTGAAAGTATGATACTAATGTCAGAGAAGTTTGAATTCAAGGAAGAGTCTAAAAGAGTTTAAACACATAAAGATGAAACATTTATAACACGCATTTACTTAAATA\n++\n+???????????????????????????????????????????????????????????????????????????+?????????????????????????+????????????????????????\n @A00744:46:HV3C3DSXX:2:1131:13232:11537\n-TGTTCTTGAAATAATGAGCACAGGACCATATTTGTCCCTTCTGGACAATAGTCAGAGAAAGGAGCACCCACAGAGAGAAAAGATCTGGTAATACTAGTTAGGGAGTGGAAGAAGCCAGGTGATATAGTTTGGCTGTGTCCCCACACAAAA\n-+\n-?????????????????????????????????????????????????????????????????????????????????????????5?????5???????????????????????????5??????????????????????????\n+TGTTCTTGAAATAATGAGCACAGGACCATATTTGTCCCTTCTGGACAATAGTCAGAGAAAGGAGCACCCACAGAGAGAAAAGATCTGGTAATACTAGTTAGGGAGTGGA\n++\n+?????????????????????????????????????????????????????????????????????????????????????????5?????5?????????????\n @A00744:46:HV3C3DSXX:2:1132:8214:29371\n GTGAGAACTCACTATCATAAGAACAGCATGAGGGTAACGACCCCCATGATTAAATTACCTCCCACCAGGTCGCAGCTCTAACACATGGGAATTACAATTCAGATTACAATTCACAATGAGATTTTGTGTGGGGACACAGCCAAACTATATC\n +\n@@ -254,10 +254,6 @@\n TAAGTCTAAGAAAAACTTGGAAAGAACAAATATCAAGCTCTGAACAGCGGTGACCT'..b"???+?????????????????????????????\n-@A00744:46:HV3C3DSXX:2:2662:2239:10128\n-TGTGGGGACACAGCCAAACTATATCACCTGGCTTCTTCCACTCCCTAACTAGTATTACCAGATCTTTTCTCTCTGTGGGTGCTCCTTTCTCTGACTATTGTCCAGAAGGGACAAATATGGTCCTGTGCTCATTATTTCAAGAACAATAGAT\n-+\n-?????????????????????????????????????????????????????????+??+??????????????????????????????????????????????????????????????????????????????????????????\n-@A00744:46:HV3C3DSXX:2:2662:14362:17472\n-ATAACATCTGCAGCTCTTAGAAAATAAAACATAGTTAATTAGGGATGGCAGGAATTATGTAATCATTACTTTTATGTTTTGTTCTTTCTAGGTCATTCAAACTGTCATCTACACATGAATAACAATGAAATTCTCATAAAGAAGCAGAAAT\n-+\n-???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????\n @A00744:46:HV3C3DSXX:2:2662:18701:8891\n CACTGCAGCTGCGCGACACACCCATGTCTTTCTACCTCAACTATCCACGCCTCTCTGCTTGCTTCTCTGCCTGTGGGGCTTTCTTGGCAGTACAGGAGTTTGCTCTGCCTATATGCAAGGCAGCCTAGAAGTGTAATGAGTTTAATTTCCC\n +\n@@ -4675,9 +4495,9 @@\n +\n ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????5????????\n @A00744:46:HV3C3DSXX:2:2668:19235:20306\n-CTCCCTTGTTGCACTTCCTGGGATCACCTGTCAAACTACCTGGGGCATGGTGACATGCATCTGTAGTCCCAACTACACAGGAGGTTGAGGTGAGAAGATCACTTGAACCCAGGAGTTCTAGTCCAGCCTGGGCAACATAGCAAGACTCCTG\n-+\n-????????????????????????????????????????????????+??+????+???????????????????????????????????????????????????+??????????????????????????????????????????\n+CTCCCTTGTTGCACTTCCTGGGATCACCTGTCAAACTACCTGGGGCATGGTGACATGCATCTGTAGTCCCAACTACACAGGAGGTTGAGGTGAGAAGATCACTTGAACCCAGGAG\n++\n+????????????????????????????????????????????????+??+????+???????????????????????????????????????????????????+??????\n @A00744:46:HV3C3DSXX:2:2668:26883:31798\n AGAATAAAGGGCACAATCATGAGTAGAACACAAAGGCTGATGATCAAGGAGTCAAGCCAGAGTGATGATGGGTGGAGACTGGAAGAAACAGACCCAGAGACCTTGTGCTGGGCAACATCTGTTTCTACACTTGCCTGGCTACCTGACGTAC\n +\n@@ -4695,9 +4515,9 @@\n +\n ???????????????????????????????????????????????+???????????????????????????????????????????????????????????????????????????????????????????????????????\n @A00744:46:HV3C3DSXX:2:2672:31928:26256\n-GGCAAATGGAAAAAAAATAAAGAATAGTGGCTCATGCCTGTAATTCCAGCACTTTGGGAGGCCAAGGCGGGCAGATCACAAGGTCGGGAGATCGAGACCAACCTGGCTAACACAGTGAAACCCTATCTCTACTAAAAATACAAAAAAAAAA\n-+\n-???????????????????????????????5????????????????????????????????????????????????????????+??+???????????????????????????????????????????????????????????\n+GGCAAATGGAAAAAAAATAAAGAATAGTGGCTCA\n++\n+???????????????????????????????5??\n @A00744:46:HV3C3DSXX:2:2672:31991:12587\n AATCAAGAAGATGTGTTAATCTAAACAATGCTGTGAGCAAATGAGACACAGGTCTCCAGGGGACACTCTGAGAAACTACACAGAATACACTTCAAAATTGTCCACCAGAAAGACAAATGAGAGAAGGGATGATCCATTGACTGTCTTCTAC\n +\n@@ -4715,9 +4535,13 @@\n +\n ???????????????????????5???????????????????????????????????????????????5???????????????????????????????????????+????????????????'?????5???????????+????\n @A00744:46:HV3C3DSXX:2:2676:12246:1595\n-AAAGAAGCAAATAACTTGAAATACAATTTGTTTTGTTTCTTGTATTTGAAAGTGCAGTTTACACAAGCCAAATAGACACCATATGGCCTTCAGTAATTTGACATTGAAGAGCAATGCATGATTTGTATTCTATTTCCAGCTACTGCACAGT\n-+\n-????????????????????????????????????????????????????????????????????????????????????????????????????????????????+????????+?????????????????????????????\n+AAAGAAGCAAATAACTTGAAATACAATTTGTTTTGTTTCTTGTATTTGAAAGTGCAGTTTACACAAGCCAAATAGACACCATATGGCCTTCAGTAATTTGACATTGAAGAGCAATGCATGATTTGTATTCTATTTCCAGCTACTGCAC\n++\n+????????????????????????????????????????????????????????????????????????????????????????????????????????????????+????????+??????????????????????????\n+@A00744:46:HV3C3DSXX:2:2676:17942:29747\n+GACACTGCCTCCTGAAGCCTGCCTATAAAATCTGGTGCAGTATGCCACAGGCTGGTTTTTCCCTTTCGGGACCCCCTCTCTCACGAGAGAGAGAGCTATTCTCCTTTCTCTTTCTT\n++\n+?????????5?????????????5????????5?????++?????????????????5?????????????????+????????5?????+?????????????????????????\n @A00744:46:HV3C3DSXX:2:2676:24153:30201\n AGATTCCTCCTTAAGAAAGAAGCAAATAACTTGAAATACAATTTGTTTTGTTTCTTGTATTTGAAAGTGCAGTTTACACAAGCCAAATAGACACCATATGGCCTTCAGTAATTTGACATTGAAGAGCAATGCATGATTTGTATTCTATTTC\n +\n"

diff -r c97f8a687258 -r 87ddc8ca7859 test-data/filtered_1.fastq_old
--- a/test-data/filtered_1.fastq_old Wed Oct 02 08:34:43 2024 +0000
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

b'@@ -1,1040 +0,0 @@\n-@M00967:43:000000000-A3JHG:1:1101:18044:1900 1:N:0:188\n-TACGGAGGATGCGAGCGTTGTCCGGA\n-+\n-BA@BBBABBFFFGGGGGGGGGGHGGG\n-@M00967:43:000000000-A3JHG:1:1101:4164:14549 1:N:0:188\n-TACGTAGGGTGCAAGCGTTATCCGGATTTATTGG\n-+\n-ABBBBFFBBFBBGGGGGGGGGGHGGGGGHFHHHH\n-@M00967:43:000000000-A3JHG:1:1101:13124:16196 1:N:0:188\n-TACGGAGGGGGCAAGCGTTATCCGGATT\n-+\n-BCCCCCCCCBCCGGGGGGGGGGHGGGGG\n-@M00967:43:000000000-A3JHG:1:1101:5053:23863 1:N:0:188\n-TACGGAGGATGCGGGCGTTATCCGGATTTATTGGGTTT\n-+\n->AAAAA@DAFFF?1AAEE/EABGGGGCGHHHHFCHEA/\n-@M00967:43:000000000-A3JHG:1:1102:14793:3762 1:N:0:188\n-TACAGAGGTCTCAAGCGTTGTTCGGAATCACTGGGCGTAAAGCGTGCGTAGGCTGTTTCGTAAGTCGTGTGTGAAAGGCGCGGGCTCAACCCGCGGACGGCACATGATACTGCGAGACTAGAGTAATGGAGGGGGAACCGGAATTCTCGGTGTAGCAGTGAAATGCGTAGATATCGAGAGGAACACTCGTGGCGAAGGCGGGTTCCTGGACATTAACTGACGCTGAGGCACGAAGGCCAGGGGAGCGAAAG\n-+\n-CCCCCFFCFFFFGGGGGGGGGGHGGGGGHHHHHHGGGEFGGHHGGGGGGGGGHHHHHHHGGFHHHHGGGHHHHHHHHHHGGGGGGGHHHHHGGGGGGGGGGGGHHHHHHHHHGGGFFGHGHHHHHHHHHHHGGGGGGGGGGGGGGGGGGGCDFFFFFFFFFFFFFFFDFFFFFFFFFFFFFFFFFFFFFFEFFFCCFAEFFCCFFB0FE/AFFFFEBBFFBFFDFFFEAEFFFFFFFFFFFF@?CDACFCD\n-@M00967:43:000000000-A3JHG:1:1102:13449:7439 1:N:0:188\n-TACGTAGGAGGCAAGCGTTATCCGGAATGACTGGGCGTAAAGGGTG\n-+\n-CCCBBFFAFFCCGGGGGGGGGGHGGGGGHHHHHGGHGEFGHHHGGE\n-@M00967:43:000000000-A3JHG:1:1102:20777:10045 1:N:0:188\n-TACGGAGGATGCGGGCGTTATCCGGATTTATTGGGTTT\n-+\n-BABCBCCCCFFFGGGGGGGGGGHGGGGGHHHHHHHGGG\n-@M00967:43:000000000-A3JHG:1:1102:15058:11924 1:N:0:188\n-TACGTAGGATCCGAGCGTTATCCGGATTT\n-+\n-CCCCCFFBFFFFGGGGGGGGGGHGGGGGH\n-@M00967:43:000000000-A3JHG:1:1102:8426:19244 1:N:0:188\n-TACGTAGGATTCAAGCGTTATCCGGATTT\n-+\n-CCCDCFFBFFFFGGGGGGGGGGHGGGGGH\n-@M00967:43:000000000-A3JHG:1:1102:10315:19580 1:N:0:188\n-TACAGAGGTCTCAAGCGTTGTTCGGAATCACTGGGCGTAAAGCGTGCGTAGGCTGTTTCGTAAGTCGTGTGTGAAAGGCGCGGGCTCAACCCGCGGACGGCACATGATACTGCGAGACTAGAGTAATGGAGGGGGAACCGGAATTCTCGGTGTAGCAGTGAAATGCGTAGATATCGAGAGGAACACTCGTGGCGAAGGCGGGTTCCTGGACATTAACTGACGCTGAGGCACGAAGGCCAGGGGAGCGAAAG\n-+\n-CCCCCFFCFFFFGGGGGGGGGGHGGGGGHHHHHHHHGGGGHHHGGGGGFGGGHHHHHHHGHHHHHHGGGHHHHHHHHHHGGGGGGGHHHHHGGGGGGGGGGGGHHHHFHHHHHGGGGGHHHHHHHHHHHHHGGGGGGGGGGGGGGGGGGGGGFFFFFFFFFFFFFFFDFFFFFFFFFFFFFFFFFFFFFFEFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFEFFFFFFFFFFFF\n-@M00967:43:000000000-A3JHG:1:1102:10011:20138 1:N:0:188\n-TACGTAGGGAGCGAGCGTTGTCCGGAATTACTGGGTG\n-+\n-B@BBBFFABFBBGGGGGGGGGGHGGGGGHHHHGHGHF\n-@M00967:43:000000000-A3JHG:1:1102:9218:23401 1:N:0:188\n-TACAGAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGCGCGTAGGTGGTTTGTTAAGTTGGATGTGAAATCCCCGGGCTCAACCTGGGAACTGCATTCAAAACTGACTGACTAGAGTATGGTAGAGGGTGGTGGAATTTCCTGTGTAGCGGTGAAATGCGTAGAT\n-+\n-BBBBBFFBBBBBGGGGGGGGCGHGCGEFHHHHHHHCEEE2GGFGGGGGGGEF5BFEGHGGHHHHHHHHGHHHHHHHHFFHGGGGGGHHHHHHHGGHHGHHHHHHGHHHHHHHHHEHHHHGHFB>GGFHDGHFHGGCFGAGGFFBGFDFHFGGHFHHGCGGGHEFFGD..;.:\n-@M00967:43:000000000-A3JHG:1:1102:14380:24828 1:N:0:188\n-TACGTAGGATCCGAGCGTTATCCGGATTT\n-+\n-ABBAAFF@FFFFGGGGGGGGGGGGGGGGH\n-@M00967:43:000000000-A3JHG:1:1102:15024:26862 1:N:0:188\n-TACGGAGGGTGCAAGCGTTAATCGGA\n-+\n-BBBBBBBBBBBBGGGGGGGG2FGGGG\n-@M00967:43:000000000-A3JHG:1:1103:18198:2609 1:N:0:188\n-TACGGAGGTGGCAAGCGTTGTCCGGATTT\n-+\n-CCCCCCCCBCCFGGGGGGGGGGHGGGGGH\n-@M00967:43:000000000-A3JHG:1:1103:17798:3752 1:N:0:188\n-TACGGAGGGAGCGAGCGTTATCCGGA\n-+\n-BBBBABBBBBBBCGGGGGGGGGHGGG\n-@M00967:43:000000000-A3JHG:1:1103:8515:3790 1:N:0:188\n-TACGTAGGGAGCGAGCGTTGTCCGGAATTACTGGGTG\n-+\n-BBBBBFFBBFBBGGGGGGGGGGHGGGGGHHHHHHHCF\n-@M00967:43:000000000-A3JHG:1:1103:22803:5970 1:N:0:188\n-TACGTAAGGGGCAAGCGTTATCCGGATTTAC\n-+\n-CCCCBFFFFFCCGGGGGGGGGGHGGGGGHHH\n-@M00967:43:000000000-A3JHG:1:1103:7671:14378 1:N:0:188\n-TACGTAGGGAGCAAGCGTTATCCGGATTTAC\n-+\n-BCBCCFFCCFCCGGGGGGGGGGHGGGGGHHH\n-@M00967:43:000000000-A3JHG:1:1103:7329:17775 1:N:0:188\n-TACGTAGGAGGCAAGCGTTATCCGGAATGACTGGGCGTAAAGGGTG\n-+\n-BBBBBFFBFFBBGGGGGGGGGGHGGGGGHHHHHHHGCEEGHHHGCG\n-@M00967:43:000000000-A3JHG:1:1104:3247:11917 1:N:0:188\n-TACGTAGTGGGCAAGCGTTATCCGGATTTA\n-+\n-?AABBFF3>C4AFEFGGFCFGG5AEFGFGG\n-@M00967:43:000000000-A3JHG:1:1104:25138:12414 1:N:0:188\n-TACGTAGGAGGCAAGCGTTATCCGGAATGACTGGGCGTAAAGGGTG\n-+\n-BBCCCFFCFFCCGG'..b'ATTACTGGGTG\n-+\n-BBBBAFFBAFBAFGGGGGGGGGHGGGGGHHHGHHGH2\n-@M00967:43:000000000-A3JHG:1:2111:9881:3810 1:N:0:188\n-GACGTAGGGGGCAAGCGTTATCCGG\n-+\n-1>AAA@FAAAD?AA0A0AEGGGHGC\n-@M00967:43:000000000-A3JHG:1:2111:28102:9219 1:N:0:188\n-TACGGAGGGGGCAAGCGTTATCCGGAAT\n-+\n-AABB3>ABDD?DAFFGGGGGGGHGGG2F\n-@M00967:43:000000000-A3JHG:1:2111:23451:9225 1:N:0:188\n-TACGTAGGGAGCAAGCGTTATCCGGATTTAC\n-+\n-CCCCCFFCCFCCGGGGGGGGGGHGGGGGHHH\n-@M00967:43:000000000-A3JHG:1:2111:19869:15034 1:N:0:188\n-TACGGAGGGGGCAAGCGTTATCCGGAATT\n-+\n-BBBBBABDBBBBGGGGGEGGGGHGGGGGH\n-@M00967:43:000000000-A3JHG:1:2111:20910:15547 1:N:0:188\n-TACGGAGGGGGCAAGCGTTATCCGGAATT\n-+\n-AAAA1>ADD1ADGGGGGGGGGGHGGGEGH\n-@M00967:43:000000000-A3JHG:1:2111:20158:16824 1:N:0:188\n-TACGTAGGGAGCGAGCGTTGTCCGGAATTACTGGGTG\n-+\n-CCCDCFFDCFCCGGGGGGGGGGHGGGGGHHHHHHHGF\n-@M00967:43:000000000-A3JHG:1:2111:8008:19696 1:N:0:188\n-TACGGAGGGGGCAAGCGTTATCCGGATTT\n-+\n-BCCCCCCCBCCCGGGGGGGGGGHGGGGGH\n-@M00967:43:000000000-A3JHG:1:2111:14251:26147 1:N:0:188\n-TACGTAGGGTGCAAGCGTTATCCGGA\n-+\n-AAAA>FFA1>AACGGGGGGGGGGEGF\n-@M00967:43:000000000-A3JHG:1:2112:12931:12612 1:N:0:188\n-TACGTAGGGAGCGAGCGTTGTCCGGAATTACTGGGTG\n-+\n-BCCBAFFCCFCCGGGGGGGGFGHGGGGGHHHGHHHHG\n-@M00967:43:000000000-A3JHG:1:2112:10839:15096 1:N:0:188\n-TACGTAGGTCCCGAGCGTTATCCGGATTTATTGG\n-+\n-CCCCCFFCFFFFGGGGGGGGGGHGGGGGHHHHHH\n-@M00967:43:000000000-A3JHG:1:2112:25157:19286 1:N:0:188\n-TACGTAGGATCCGAGCGTTATCCGGATTT\n-+\n-CCCCCFFCFFFFGGGGGGGGGGHGGGGGG\n-@M00967:43:000000000-A3JHG:1:2112:24834:22079 1:N:0:188\n-TACGTAGGAGGCAAGCGTTATCCGGAATGACTGGGCGTAAAGGGTG\n-+\n-BBBBAFFBFFBBGGGGEGGGGGHGGGEFHHFHHHHGCGGGHHGGHG\n-@M00967:43:000000000-A3JHG:1:2113:14457:3580 1:N:0:188\n-TACGGAGGATGCGAGCGTTGTCCGGATTTACTGG\n-+\n-AAAAB?ABBFFFGGGCGGGGGCHFGGGGGFHHHG\n-@M00967:43:000000000-A3JHG:1:2113:20030:3857 1:N:0:188\n-TACGTAAGGGGCAAGCGTTATCCGGATTTAC\n-+\n-BBBBAFFFFFBBGCAGGGGGGGHGGGGGH5G\n-@M00967:43:000000000-A3JHG:1:2113:25338:6570 1:N:0:188\n-TACGGAGGATGCGGGCGTTATCCGGATTTATTGGGTTT\n-+\n-BBBB@ABBBFFFGGGGGGGGGGHGGGGGHGHHHHHGGG\n-@M00967:43:000000000-A3JHG:1:2113:25467:7322 1:N:0:188\n-TACGGAGGAGGCGAGCGTTATCCGGATTTATTGG\n-+\n-AAAA??AD11>A0EEGGGG0AGHGGGGGHH2FGH\n-@M00967:43:000000000-A3JHG:1:2113:5038:9324 1:N:0:188\n-TACGGAGGTGGCGAGCGTTGTCCGGATTT\n-+\n->AAA1>ADAAAFGG0EEGGGFGHGEFGGH\n-@M00967:43:000000000-A3JHG:1:2113:28731:11914 1:N:0:188\n-TACGTAGGGTGCAAGCGTTATCCGGATTTATTGG\n-+\n-BBBBBFFB@BAAGGGGGEGGGGHGGGGGHHHHHH\n-@M00967:43:000000000-A3JHG:1:2114:22327:5513 1:N:0:188\n-TACGTAGGGAGCAAGCGTTGTTCGGAATGACTGGGCGTAAAGGGTG\n-+\n-BBBBBFFBAFBBEGFGFGGCFGHGGGGGBFHHGFHHGEGFHHHGHG\n-@M00967:43:000000000-A3JHG:1:2114:7852:9583 1:N:0:188\n-TACGTAGGGTGCAAGCGTTATCCGGATTTAC\n-+\n-ABCCBFFCCFBCGGGGGGGGGGHGGGGGHHH\n-@M00967:43:000000000-A3JHG:1:2114:16606:9609 1:N:0:188\n-TACAGAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGCGCGTAGGTGGTTTGTTAAGTTGGATGTGAAATCCCCGGGCTCAACCTGGGAACTGCATTCAAAACTGACTGACTAGAGTATGGTAGAGGGTGGTGGAATTTCCTGTGTAGCGGTGAAATGCGTAGAT\n-+\n-BCCBCFFBCABCGGGGGGGGGGHGGGGGHHHHHGGGGEGGHGHGGGGGGGGGFGGEFHGHHHHHHHHHHHHHHGHHHHHHGGGGGGHHHHHHHHGHHGHHHHHHGHGHHHHHHHHHHHHHHHHHHHHHFHHHHHGDFGGGGHHHHHHGHHHHHHHHGGGGGHGHHHGGGGGH\n-@M00967:43:000000000-A3JHG:1:2114:4360:11353 1:N:0:188\n-TACGTAGGGTGCAAGCGTTATCCGGATTTATTGG\n-+\n-AAAA>CFBCFABGGGGGGGGGGHGGGGGHHHHHG\n-@M00967:43:000000000-A3JHG:1:2114:28521:18445 1:N:0:188\n-TACGTAGGGTGCAAGCGTTATCCGGATTTATTGG\n-+\n-BBBBBFFB@>ABGGGG?FFGGGHGG2EGHHHGHG\n-@M00967:43:000000000-A3JHG:1:2114:16773:20452 1:N:0:188\n-TACGTAGGGTGCAAGCGTTATCCGGATTTATTGG\n-+\n-ABCAAFFCCFCCGGGGGGGGGGHGGGGGGHHHHH\n-@M00967:43:000000000-A3JHG:1:2114:23924:23696 1:N:0:188\n-TACGTAGGAGGCAAGCGTTATCCGGAATGACTGGGCGTAAAGGGTG\n-+\n->AAB3BFBFFCCGGGGGGGGGGHGGGGGCBDFHHHFFEGGHHHGFF\n-@M00967:43:000000000-A3JHG:1:2114:9786:25559 1:N:0:188\n-TACAGAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGCGCGTAGGTGGTTTGTTAAGTTGGATGTGAAATCCCCGGGCTCAACCTGGGAACTGCATTCAAAACTGACTGACTAGAGTATGGTAGAGGGTGGTGGAATTTCCTGTGTAGCGGTGAAATGCGTAGAT\n-+\n-BBBBBFFBABBBGGGGGGGG2AGFEGAFGHFHHHHAAEGGHHFG?EGGEGGG@BFEF1EHGHHHHHHHH3GHFHHHH3EGAEECGGHHHHHHFE/GF/2GFBGHFHHHDCCGF2GDFCGFF2@@G2FG<1?GFBACFCAFFHGFHBGHFFGB0=DFGFA@EHFCGHDA.@.:\n'

diff -r c97f8a687258 -r 87ddc8ca7859 test-data/filtered_2.fastq
--- a/test-data/filtered_2.fastq Wed Oct 02 08:34:43 2024 +0000
+++ b/test-data/filtered_2.fastq Wed Oct 02 09:52:40 2024 +0000

b"@@ -1,527 +1,147 @@\n @A00744:46:HV3C3DSXX:2:1101:23366:33818\n-ATACTTCACTTTAATCACTTATATTTATAAAGCAATTGGCTGTATATTAGGGGAAAAGCAGAAATAGTACAGACTACATTCTTGATGCACACAGGAATACATACAAGACATAAAAAATAATAACAAAAATCAGGGAGAAAATCTACAACC\n+ATACTTCACTTTAATCACTTATATTTATAAAGCAATTGGCTGTATA\n +\n-??????????????????????????????????????????????????????????????????????????????????????????5???????????????5??5????????????????5????'?????????????'????\n-@A00744:46:HV3C3DSXX:2:1102:12572:34319\n-AAAAAAAAAAAGTAGCGAACACATATCCTATAAAACATGGATAATATAGAGAAATTCTGAAAGGGTAAAAACTTTCAAAGCTTAAACAAATCCAGACCAGGAAAGTATAAATACAAATTTGAAAGTATGATACTAATGTCAGAGAAGTTTG\n-+\n-???????????????????????+???????5????5????+?????????????????????????????????????????????????????+????+???????????????????????5??+??????'????????????????\n-@A00744:46:HV3C3DSXX:2:1103:5547:9690\n-AGATTGAAAATAAGCAACTAAGGGCAGATTAGTAACTATAAGTAACTTGCTAATGAACCTAGTCACCAAAAGGAGAAAACAGAATATTAAAATTTGAAAATGAAGAGTAACCAAAAACAGAGAGGAACCTGAAACTACCCAAAGAAAGTAT\n-+\n-???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????5????????????5??????\n+??????????????????????????????????????????????\n @A00744:46:HV3C3DSXX:2:1103:10104:9001\n ATAGACAAGAAAGCTGGAAGCTTGCACAGGTGAATGCCAGCAGTTGTGCCAAGAGGAAAAGGCTATCTGGGACTAGGCATGTGCAAAATGGCGACTCCATGTTCCCTTCTTTTGCCAGCT\n +\n ????????????????????5??????5???????+???????????????????+????????5???+?????'+????????+?????5???5???5?????+5??????????????\n-@A00744:46:HV3C3DSXX:2:1103:10945:6261\n-AAAAAAAAAAAGTAGCGAACACATATCCTATAAAACATGGATAATATAGAGAAATTCTGAAAGGGTAAAAACTTTCAAAGCTTAAACAAATCCAGACCAGGAAAGTATAAATACAAATTTGAAAGTATGATACTAATGTCAGAGAAGTTTG\n+@A00744:46:HV3C3DSXX:2:1104:20717:31673\n+GCCAGCTACGTGTACAGTAAGGAGCAGACAAGTTGGCCCTGGCCAAGTGAAAAACCCATTTGCATAATAAGATTAGGGTGGGGTGGCCA\n++\n+???????+?????????????????????????????????????????????????????????????????????????????????\n+@A00744:46:HV3C3DSXX:2:1106:27778:33786\n+CCAACTGAAAAACAGTGTGTAGTCTATGCTTCTGACCAGATGGGCTTCTCTTGT\n++\n+????????????5?????????+???????????????????+???????????\n+@A00744:46:HV3C3DSXX:2:1109:4752:36182\n+CTGAGTAGTTTGCAGAAGGCATCTTAACAGATGGTAACAGAGAAGCAAGAGATAAGTGCTGCAGCTGATGCAAGGTGC\n++\n+??????????????????????????????????????????????????????????????????????????????\n+@A00744:46:HV3C3DSXX:2:1109:19488:8750\n+TATTTTCATGCTAGATTTAATCAAACTTACAGTGGTTTTGTAGTTGTGAGATAATTCATTGGCTTAAGCA\n +\n-???????????+?????????5????+??????????????????????5??????+??????????????5???5??????????5?????????????????+????????????????????????????????5???+???+????5\n-@A00744:46:HV3C3DSXX:2:1103:23692:35258\n-CATACCCGAGACTGAGTAATTTATAAAGTAAAGAGGTTTAGTTGACTCACAGTTCAACATGGCTGGGTAGGCCTCAGGAAACTTACAATCATGACAGAAGGGGAAGCAAACACGCCCTTGTTCACATGGCAGTAGCA\n+????????????????????????+?????????????????????????????????????????????\n+@A00744:46:HV3C3DSXX:2:1110:31765:25567\n+AGAAGGGACAAATATGGTCCTGTGCTCATTATTTCAAGAACAA\n++\n+???????????????????????????????????????????\n+@A00744:46:HV3C3DSXX:2:1116:24641:9502\n+ATATTGTCTTTCTCCCCTCACCCCCACCTGTCCCTCCAGGGATCTTTGACTTTTAAGGTTTTAGGAAATAAGGCACTGAGAAAAATGAGAAA\n +\n-??????????????????????????????+?????????????????????????????????????5??????????????????????????+????????+??????????????????5?????????????\n-@A00744:46:HV3C3DSXX:2:1104:20717:31673\n-GCCAGCTACGTGTACAGTAAGGAGCAGACAAGTTGGCCCTGGCCAAGTGAAAAACCCATTTGCATAATAAGATTAGGGTGGGGTGGCCAGCCTTCCCTGTGCGCTATATAAACATCACATCTGGTCCAACCAATCTGTGGGCCCTAGTAAA\n+????????????????????????????????????????????????????????????????????????????????????????????\n+@A00744:46:HV3C3DSXX:2:1118:27498:27352\n+AAGCCAATGAATTATCTCACAACTACAAAACCACTGTAAGTTTGATTAAATCTAGCATGAAAATAGCAGTTTCTG\n++\n+???????????????????????????????????????????????????????????????????????????\n+@A00744:46:HV3C3DSXX:2:1132:8214:29371\n+ACCATATTTGTCCCTTCTGGACAATAGTCAGAGAAAGGAGCACCCACAGAGAGAAAAGATCTGGTAATACTAGTTAGGGAGTGGAAGAAGCCAGGTGA\n +\n-???????+???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????5???'?????????????5?????\n-@A00744:46:HV3C3DSXX:2:1105:22372:6355\n-GTGGGTAAATAGATTGAAA"..b"???????55?5?????????5??????+??????????\n-@A00744:46:HV3C3DSXX:2:2668:26883:31798\n-TAATCTCCTTGTCTAGAGGGAACAAACAGGTTTGCATCAGCAGCTATTCTGTTGGTGTAATATGCATGTCCAAAAATAGCACCAAATCAAATAGTTTTAATCCTCAATTTTGTTAAATAGCTGGATATATTGGATATTTTTCCAAAATAAA\n+TTTTGCACATGCCTAGTCCCAGATAGCCTTTTCCTCTTGGCACAACTGCTGGCATTCACCTGTGCAAGCTTCCAGCTTTCTTGTCTATGTCTGCAGCTCTATTTTACAGGCTG\n +\n-???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????\n-@A00744:46:HV3C3DSXX:2:2671:21685:10394\n-AAGGAGAAGTGCCACGCAAAAGGGGGAAAAGCCTGTTATAAAACCATCAGATCCCGTGAGAACTCACTATCATAAGAACAGCATGAGGGTAACGACCCCCATGATTAAATTACCTCCCACCAGGTCGC\n-+\n-+?????+??????????????????+??????????????????????????5????????????????????????????????????????$?????????????5?????+???+?????5????\n-@A00744:46:HV3C3DSXX:2:2672:23158:24596\n-CCTGCTTCAGAATGGCTGAGTAGTTTGCAGAAGGCATCTTAACAGATGGTAACAGAGAAGCAAGAGATAAGTGCTGCAGCTGATGCAAGGTGCTGGCAGTGACACTATCACAAAGCTGGTTGCTGTAAAAATGTGGCCAAGAGGATGTGAG\n-+\n-????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????'??????\n-@A00744:46:HV3C3DSXX:2:2672:29225:19695\n-GAGAAGTGCCACGCAAAAGGGGGAAAAGCCTGTTATAAAACCATCAGATCCCGTGAGAACTCACTATCATAAGAACAGCATGAGGGTA\n-+\n-???????????????+??????????????????5????+????????????????????????????????????????????????\n-@A00744:46:HV3C3DSXX:2:2672:31928:26256\n-GGTTTGCATCAGCAGCTATTCTGTTGGTGTAATATGCATGTCCAAAAATAGCACCAAATCAAATAGTTTTAATCCTCAATTTTGTTAAATAGCTGGATATATTGGATATTTTTCCAAAATAAATCTAAATAAATATTGAAAAACTAATAAA\n-+\n-??????????????????????????????????+????????????????????????????????5?????????????????????????????+??????????????+?5?????????+????+????????+???+5???????\n-@A00744:46:HV3C3DSXX:2:2672:31991:12587\n-TAACGACCCCCATGATTAAATTACCTCCCACCAGGTCGCAGCTCTAACACATGGGAATTACAATTCAGATTACAAT\n+????????????????????????????????????????????????????????????????????????????????????????????????????????????5????\n+@A00744:46:HV3C3DSXX:2:2668:26883:31798\n+TAATCTCCTTGTCTAGAGGGAACAAACAGGTTTGCATCAGCAGCTATTCTGTTGGTGT\n +\n-??????????????????????????????5???????????????????????????????+???????5????+\n-@A00744:46:HV3C3DSXX:2:2676:12246:1595\n-TAAAAAGGAGAAATTTTAGTTTGAACTTTTTTATTTATTTATTTTTAGTTTCAATCTCTTTTAGACTTCACTGGATAAAAAAGAGAAGAAATGAATAAGTGAATAAATAAATGTCCTGCCTCTAAGAGACAGCAAGGGCAAAGGCAGAGAG\n-+\n-??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????+????+?????5?????\n-@A00744:46:HV3C3DSXX:2:2676:17942:29747\n-CTTTTTTATCCAGTGAAGTCTAAAAGAGATTGAAACTAAAAATAAATAAATAAAAAAGTTCAAACTAAAATTTCTCCTTTTTAGTGACCTCACTGAAGCTGTGTCATTATCTGGGGTAAATACCCAAGGTTTGTCTCTCCGCCAAGAAGAT\n-+\n-????????????????????????????????????????????????????????????????????????????????????????5?????????????????????????????????????5????????????????????????\n-@A00744:46:HV3C3DSXX:2:2676:24153:30201\n-TTCAGTGAGGTCACTAAAAAGGAGAAATTTTAGTTTGAACTTTTTTATTTATTTATTTTTAGTTTCAATCTCTTTTAGACTTCACTGGATAAAAAAGAGAAGAAATGAATAAGTGAATAAATAAATGTCCTGCCTCTAAGAGACAGCAAGG\n+??????????????????????????????????????????????????????????\n+@A00744:46:HV3C3DSXX:2:2672:23158:24596\n+CCTGCTTCAGAATGGCTGAGTAGTTTGCAGAAGGCATCTTAACAGATGGTAACAGAGAAGCAAGAGATAAGTGCTGCAGCTGATGCAAGGTGC\n +\n-??????????????????????????????????????????????????????????????????????????????????????????????+?????????????????????????+????????5?????????????????????\n-@A00744:46:HV3C3DSXX:2:2677:1506:23046\n-CGCCTTGGCCTCCCAAAGTGCTGGAATTACAGGC\n+?????????????????????????????????????????????????????????????????????????????????????????????\n+@A00744:46:HV3C3DSXX:2:2672:31928:26256\n+GGTTTGCATCAGCAGCTATTCTGTTGGTGT\n +\n-?5????????????+???????????????????\n-@A00744:46:HV3C3DSXX:2:2677:9905:30295\n-AATTTAATATATTTTTATTACTTTAGCTTCAATT\n-+\n-??????????????????????????????????\n-@A00744:46:HV3C3DSXX:2:2678:32533:22701\n-ATTGTTTTTGCTATGTTATTTATTGCTACCTTATTATTTAAGTAAATGCGTGTTATAAATGTTT\n-+\n-????????????????????????????????????????????????????????????????\n+??????????????????????????????\n"

diff -r c97f8a687258 -r 87ddc8ca7859 test-data/filtered_2.fastq_old
--- a/test-data/filtered_2.fastq_old Wed Oct 02 08:34:43 2024 +0000
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

b'@@ -1,624 +0,0 @@\n-@M00967:43:000000000-A3JHG:1:1101:4164:14549 1:N:0:188\n-TACGTAGGGTGCAAGCGTTATCCGGATTTATTGG\n-+\n-ABBBBFFBBFBBGGGGGGGGGGHGGGGGHFHHHH\n-@M00967:43:000000000-A3JHG:1:1101:13124:16196 1:N:0:188\n-TACGGAGGGGGCAAGCGTTATCCGGATT\n-+\n-BCCCCCCCCBCCGGGGGGGGGGHGGGGG\n-@M00967:43:000000000-A3JHG:1:1102:14793:3762 1:N:0:188\n-TACAGAGGTCTCAAGCGTTGTTCGGAATCACTGGGCGTAAAGCGTGCGTAGGCTGTTTCGTAAGTCGTGTGTGAAAGGCGCGGGCTCAACCCGCGGACGGCACATGATACTGCGAGACTAGAGTAATGGAGGGGGAACCGGAATTCTCGGTGTAGCAGTGAAATGCGTAGATATCGAGAGGAACACTCGTGGCGAAGGCGGGTTCCTGGACATTAACTGACGCTGAGGCACGAAGGCCAGGGGAGCGA\n-+\n-CCCCCFFCFFFFGGGGGGGGGGHGGGGGHHHHHHGGGEFGGHHGGGGGGGGGHHHHHHHGGFHHHHGGGHHHHHHHHHHGGGGGGGHHHHHGGGGGGGGGGGGHHHHHHHHHGGGFFGHGHHHHHHHHHHHGGGGGGGGGGGGGGGGGGGCDFFFFFFFFFFFFFFFDFFFFFFFFFFFFFFFFFFFFFFEFFFCCFAEFFCCFFB0FE/AFFFFEBBFFBFFDFFFEAEFFFFFFFFFFFF@?CDAC\n-@M00967:43:000000000-A3JHG:1:1102:13449:7439 1:N:0:188\n-TACGTAGGAGGCAAGCGTTATCCGGAATGACTGGGCGTAAAGGGTG\n-+\n-CCCBBFFAFFCCGGGGGGGGGGHGGGGGHHHHHGGHGEFGHHHGGE\n-@M00967:43:000000000-A3JHG:1:1102:10315:19580 1:N:0:188\n-TACAGAGGTCTCAAGCGTTGTTCGGAATCACTGGGCGTAAAGCGTGCGTAGGCTGTTTCGTAAGTCGTGTGTGAAAGGCGCGGGCTCAACCCGCGGACGGCACATGATACTGCGAGACTAGAGTAATGGAGGGGGAACCGGAATTCTCGGTGTAGCAGTGAAATGCGTAGATATCGAGAGGAACACTCGTGGCGAAGGCGGGTTCCTGGACATTAACTGACGCTGAGGCACGAAGGCCAGGGGAGCGA\n-+\n-CCCCCFFCFFFFGGGGGGGGGGHGGGGGHHHHHHHHGGGGHHHGGGGGFGGGHHHHHHHGHHHHHHGGGHHHHHHHHHHGGGGGGGHHHHHGGGGGGGGGGGGHHHHFHHHHHGGGGGHHHHHHHHHHHHHGGGGGGGGGGGGGGGGGGGGGFFFFFFFFFFFFFFFDFFFFFFFFFFFFFFFFFFFFFFEFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFEFFFFFFFFF\n-@M00967:43:000000000-A3JHG:1:1102:10011:20138 1:N:0:188\n-TACGTAGGGAGCGAGCGTTGTCCGGAATTACTGGGTG\n-+\n-B@BBBFFABFBBGGGGGGGGGGHGGGGGHHHHGHGHF\n-@M00967:43:000000000-A3JHG:1:1103:8515:3790 1:N:0:188\n-TACGTAGGGAGCGAGCGTTGTCCGGAATTACTGGGTG\n-+\n-BBBBBFFBBFBBGGGGGGGGGGHGGGGGHHHHHHHCF\n-@M00967:43:000000000-A3JHG:1:1103:22803:5970 1:N:0:188\n-TACGTAAGGGGCAAGCGTTATCCGGA\n-+\n-CCCCBFFFFFCCGGGGGGGGGGHGGG\n-@M00967:43:000000000-A3JHG:1:1103:7329:17775 1:N:0:188\n-TACGTAGGAGGCAAGCGTTATCCGGAATGACTGGGCGTAAAGGGTG\n-+\n-BBBBBFFBFFBBGGGGGGGGGGHGGGGGHHHHHHHGCEEGHHHGCG\n-@M00967:43:000000000-A3JHG:1:1104:25138:12414 1:N:0:188\n-TACGTAGGAGGCAAGCGTTATCCGGAATGACTGGGCGTAAAGGGTG\n-+\n-BBCCCFFCFFCCGGGGGGGGGGHGGGGGHHHHHHHHGGGGHHHGHG\n-@M00967:43:000000000-A3JHG:1:1104:24665:17168 1:N:0:188\n-TACGTAGGGTGCAAGCGTTATCCGGATTTATTGG\n-+\n-BBBB?FFBAFBBFGGGGGGGGGHGGGGGHHHHHH\n-@M00967:43:000000000-A3JHG:1:1104:17315:20406 1:N:0:188\n-TACGTAAGGGGCAAGCGTTATCCGGA\n-+\n-DDDDDFFFFFCDGGGGGGGGGGHGGG\n-@M00967:43:000000000-A3JHG:1:1105:18572:8415 1:N:0:188\n-TACGTAGGGAGCGAGCGTTGTCCGGAATTACTGGGTG\n-+\n-ABBBAFFB3CABGGGGGGGCGGHGGGEFHHGHHHHHA\n-@M00967:43:000000000-A3JHG:1:1105:5622:9401 1:N:0:188\n-TACGGAGGGGGCAAGCGTTATCCGGATTT\n-+\n-ABCCCCCCBBCCGGGGGGGGGGHGGGGGH\n-@M00967:43:000000000-A3JHG:1:1105:5580:9621 1:N:0:188\n-TACAGAGGTCTCAAGCGTTGTTCGGAATCACTGGGCGTAAAGCGTGCGTAGGCTGTTTCGTAAGTCGTGTGTGAAAGGCGCGGGCTCAACCCGCGGACGGCACATGATACTGCGAGACTAGAGTAATGGAGGGGGAACCGGAATTCTCGGTGTAGCAGTGAAATGCGTAGATATCGAGAGGAACACTCGTGGCGAAGGCGGGTTCCTGGACATTAACTGACGCTGAGGCACGAAGGCCAGGGGAGCGA\n-+\n-BCBCCFFCBFFFGGGGFGGGFGHGGGGGHHHHHHHHGGCGHHHGDGGGAEGGHHHHHHGGAGHHHHGG1FGHGHGHHFG@ECEFGCHHHHHG@@GC@<C@DGGHHFFFDGHHHGCGCDHHGGHDDDDHGCGEGG?DFGGGGGGGFFFFGGEGAFBFFFFBFFFFFFF.ABFFFF/A..;CDFF?BFFFFAADC>FCF?EDB;=EFFFFFFFFFBFFFFBFFDD..9A9A?FFF..AEEEFFF;.-.-@\n-@M00967:43:000000000-A3JHG:1:1105:23025:12058 1:N:0:188\n-TACGTAGGAGGCAAGCGTTATCCGGAATGACTGGGCGTAAAGGGTG\n-+\n-BCCDCFFDFFDDGGGGGGGGGGHGGGGGHHHHHHHGGEFEHHHGHG\n-@M00967:43:000000000-A3JHG:1:1105:7380:21363 1:N:0:188\n-TACGTAGGGAGCGAGCGTTGTCCGGAATTACTGGGTG\n-+\n-ABBAAFFBBFBBFFEGGGG?FGHGGGGFHHHHHHGFE\n-@M00967:43:000000000-A3JHG:1:1105:10286:23294 1:N:0:188\n-TACGGAGGGGGCAAGCGTTATCCGGATTT\n-+\n-CCCCCCBBCCCCGGGGGGGGGGHGGGGGH\n-@M00967:43:000000000-A3JHG:1:1105:12965:26634 1:N:0:188\n-TACGTAGGGTGCAAGCGTTATCCGGATTTATTGG\n-+\n-BBBBBFFBB4AAGFBGGGGGGGHGGGGGHGHHHH\n-@M00967:43:000000000-A3JHG:1:1106:24475:12056 1:N:0:188\n-TACGTAGGGAGCAAGCGTTGTTCGGAATGACTGGGCGTAAAGGGTG\n-+\n-BCCCBFFCCFDDGGGGGGGGGGHGGGGGHHHHHHHGG'..b'GGGGHGHHHHHHGGGGHFFGGGGGGFGGHHHHHHHGHHGHHHGFGHHHHHHGHAGE@EGGGGHHHHHGGGGGGGGGGGGGHHHHHHHHHGGGGGHGHHHHHHHGGHHGGGGAEGGGGGGGGGGGGGGGFFFFFFFFFFFFFFFFFFFEFFFF?EFFFFFFFFFFFFFFFFFFFBFFFFFFFFFFFEFFFFFFFFFFFFFFFFFEFFFFFDDDFFFFEFF?DFF-\n-@M00967:43:000000000-A3JHG:1:2108:27580:8673 1:N:0:188\n-TACGTAGGAGGCAAGCGTTATCCGGA\n-+\n->>AA3CFA44AACGGGGGGGGGHCCG\n-@M00967:43:000000000-A3JHG:1:2108:27846:15702 1:N:0:188\n-TACGTAAGGGGCAAGCGTTATCCGGA\n-+\n-BBBABF4CFFBBFGGGGGGGGGGGGD\n-@M00967:43:000000000-A3JHG:1:2109:15993:1967 1:N:0:188\n-TACGTAGGGAGCAAGCGTTGTTCGGAATGACTGGGCGTAAAGGGTG\n-+\n-CBCCCFFCCFCCGGGGGGGGGGGGGGGGHGHHGGGHGEEGCGHGHG\n-@M00967:43:000000000-A3JHG:1:2109:12598:17782 1:N:0:188\n-TACGTAGGGAGCGAGCGTTGTCCGGAATTACTGGGTG\n-+\n-CBCBCFFCCFCCGGGGGGGGGGHGGGGGHHHHHHHHG\n-@M00967:43:000000000-A3JHG:1:2109:16424:18256 1:N:0:188\n-TACGGAGGGGGCAAGCGTTATCCGGATTT\n-+\n-BBBBBBA@BBBBGGGGGGGGGGHGGGGGH\n-@M00967:43:000000000-A3JHG:1:2109:28147:21081 1:N:0:188\n-TACGTAGGAGGCAAGCGTTATCCGGAATGACTGGGCGTAAAGGGTG\n-+\n->AAA>F4A4CABGGFGGGGGGGHGGGGGGHHGGHHHGGGGHGHFCF\n-@M00967:43:000000000-A3JHG:1:2109:11980:24372 1:N:0:188\n-TACGTAGGGAGCAAGCGTTGTTCGGAATGACTGGGCGTAAAGGGTG\n-+\n-CCCCCFFCCFCCGGGGGGGGGGHGGGGGFHHGHHHGGGGGHHHGHG\n-@M00967:43:000000000-A3JHG:1:2110:24580:11767 1:N:0:188\n-TACGTAGGAGGCAAGCGTTATCCGGAATGACTGGGCGTAAAGGGTG\n-+\n-BBBCCFFCDFBCGGGGGGGGGGHGGGEGHHHHHGHFGEFGHHHGAF\n-@M00967:43:000000000-A3JHG:1:2110:6116:13104 1:N:0:188\n-TACGTAGGAGGCAAGCGTTATCCGGAATGACTGGGCGTAAAGGGTG\n-+\n-BBBBBFFBFFBBGGGGGGFGGGHGGGGGHHHHHHHHGGGGHHGGHG\n-@M00967:43:000000000-A3JHG:1:2110:23162:17853 1:N:0:188\n-TACGTAGGGAGCGAGCGTTGTCCGGAATTACTGGGTG\n-+\n-BCCCCFFCCFCCGGGGGGGGGGHGGGGGHHHGHHHGF\n-@M00967:43:000000000-A3JHG:1:2110:17767:25669 1:N:0:188\n-TACGTAGGGAGCGAGCGTTGTCCGGAATTACTGGGTG\n-+\n-AABB3CFBAFBBGGGGGGGGGFHFGG?FHHFHHHHHG\n-@M00967:43:000000000-A3JHG:1:2110:21271:27854 1:N:0:188\n-TACGTAGGGAGCGAGCGTTGTCCGGAATTACTGGGTG\n-+\n-BBBBAFFBAFBAFGGGGGGGGGHGGGGGHHHGHHGH2\n-@M00967:43:000000000-A3JHG:1:2111:28102:9219 1:N:0:188\n-TACGGAGGGGGCAAGCGTTATCCGGA\n-+\n-AABB3>ABDD?DAFFGGGGGGGHGGG\n-@M00967:43:000000000-A3JHG:1:2111:19869:15034 1:N:0:188\n-TACGGAGGGGGCAAGCGTTATCCGGA\n-+\n-BBBBBABDBBBBGGGGGEGGGGHGGG\n-@M00967:43:000000000-A3JHG:1:2111:20910:15547 1:N:0:188\n-TACGGAGGGGGCAAGCGTTATCCGGA\n-+\n-AAAA1>ADD1ADGGGGGGGGGGHGGG\n-@M00967:43:000000000-A3JHG:1:2111:20158:16824 1:N:0:188\n-TACGTAGGGAGCGAGCGTTGTCCGGAATTACTGGGTG\n-+\n-CCCDCFFDCFCCGGGGGGGGGGHGGGGGHHHHHHHGF\n-@M00967:43:000000000-A3JHG:1:2111:8008:19696 1:N:0:188\n-TACGGAGGGGGCAAGCGTTATCCGGATTT\n-+\n-BCCCCCCCBCCCGGGGGGGGGGHGGGGGH\n-@M00967:43:000000000-A3JHG:1:2111:14251:26147 1:N:0:188\n-TACGTAGGGTGCAAGCGTTATCCGGA\n-+\n-AAAA>FFA1>AACGGGGGGGGGGEGF\n-@M00967:43:000000000-A3JHG:1:2112:12931:12612 1:N:0:188\n-TACGTAGGGAGCGAGCGTTGTCCGGAATTACTGGGTG\n-+\n-BCCBAFFCCFCCGGGGGGGGFGHGGGGGHHHGHHHHG\n-@M00967:43:000000000-A3JHG:1:2112:24834:22079 1:N:0:188\n-TACGTAGGAGGCAAGCGTTATCCGGAATGACTGGGCGTAAAGGGTG\n-+\n-BBBBAFFBFFBBGGGGEGGGGGHGGGEFHHFHHHHGCGGGHHGGHG\n-@M00967:43:000000000-A3JHG:1:2113:20030:3857 1:N:0:188\n-TACGTAAGGGGCAAGCGTTATCCGGA\n-+\n-BBBBAFFFFFBBGCAGGGGGGGHGGG\n-@M00967:43:000000000-A3JHG:1:2113:28731:11914 1:N:0:188\n-TACGTAGGGTGCAAGCGTTATCCGGATTTATTGG\n-+\n-BBBBBFFB@BAAGGGGGEGGGGHGGGGGHHHHHH\n-@M00967:43:000000000-A3JHG:1:2114:22327:5513 1:N:0:188\n-TACGTAGGGAGCAAGCGTTGTTCGGAATGACTGGGCGTAAAGGGTG\n-+\n-BBBBBFFBAFBBEGFGFGGCFGHGGGGGBFHHGFHHGEGFHHHGHG\n-@M00967:43:000000000-A3JHG:1:2114:7852:9583 1:N:0:188\n-TACGTAGGGTGCAAGCGTTATCCGGATTTA\n-+\n-ABCCBFFCCFBCGGGGGGGGGGHGGGGGHH\n-@M00967:43:000000000-A3JHG:1:2114:4360:11353 1:N:0:188\n-TACGTAGGGTGCAAGCGTTATCCGGATTTATTGG\n-+\n-AAAA>CFBCFABGGGGGGGGGGHGGGGGHHHHHG\n-@M00967:43:000000000-A3JHG:1:2114:28521:18445 1:N:0:188\n-TACGTAGGGTGCAAGCGTTATCCGGATTTATTGG\n-+\n-BBBBBFFB@>ABGGGG?FFGGGHGG2EGHHHGHG\n-@M00967:43:000000000-A3JHG:1:2114:16773:20452 1:N:0:188\n-TACGTAGGGTGCAAGCGTTATCCGGATTTATTGG\n-+\n-ABCAAFFCCFCCGGGGGGGGGGHGGGGGGHHHHH\n-@M00967:43:000000000-A3JHG:1:2114:23924:23696 1:N:0:188\n-TACGTAGGAGGCAAGCGTTATCCGGAATGACTGGGCGTAAAGGGTG\n-+\n->AAB3BFBFFCCGGGGGGGGGGHGGGGGCBDFHHHFFEGGHHHGFF\n'

diff -r c97f8a687258 -r 87ddc8ca7859 test-data/filtered_kmers1.kmc_pre

Binary file test-data/filtered_kmers1.kmc_pre has changed

diff -r c97f8a687258 -r 87ddc8ca7859 test-data/filtered_kmers1.kmc_suf

Binary file test-data/filtered_kmers1.kmc_suf has changed

diff -r c97f8a687258 -r 87ddc8ca7859 test-data/filtered_kmers2.kmc_pre

Binary file test-data/filtered_kmers2.kmc_pre has changed

diff -r c97f8a687258 -r 87ddc8ca7859 test-data/filtered_kmers2.kmc_suf

Binary file test-data/filtered_kmers2.kmc_suf has changed

diff -r c97f8a687258 -r 87ddc8ca7859 test-data/histogram.txt
--- a/test-data/histogram.txt Wed Oct 02 08:34:43 2024 +0000
+++ b/test-data/histogram.txt Wed Oct 02 09:52:40 2024 +0000

@@ -1,28 +1,28 @@
-3 52
-4 132
-5 208
-6 232
-7 239
-8 389
-9 416
-10 656
-11 803
-12 854
-13 1001
-14 780
-15 913
-16 791
-17 584
-18 485
-19 480
-20 402
-21 260
-22 231
-23 157
-24 119
-25 99
-26 40
-27 27
-28 24
-29 4
-30 7
+3 577
+4 873
+5 1249
+6 1286
+7 1399
+8 1156
+9 792
+10 768
+11 509
+12 250
+13 196
+14 139
+15 133
+16 109
+17 28
+18 20
+19 3
+20 5
+21 4
+22 6
+23 2
+24 8
+25 20
+26 0
+27 0
+28 0
+29 0
+30 0

diff -r c97f8a687258 -r 87ddc8ca7859 test-data/intersect_max_db.kmc_pre

Binary file test-data/intersect_max_db.kmc_pre has changed

diff -r c97f8a687258 -r 87ddc8ca7859 test-data/intersect_max_db.kmc_pre_bk

Binary file test-data/intersect_max_db.kmc_pre_bk has changed

diff -r c97f8a687258 -r 87ddc8ca7859 test-data/intersect_max_db.kmc_suf

Binary file test-data/intersect_max_db.kmc_suf has changed

diff -r c97f8a687258 -r 87ddc8ca7859 test-data/intersect_max_db.kmc_suf_bk

Binary file test-data/intersect_max_db.kmc_suf_bk has changed

diff -r c97f8a687258 -r 87ddc8ca7859 test-data/intersect_min_db.kmc_pre

Binary file test-data/intersect_min_db.kmc_pre has changed

diff -r c97f8a687258 -r 87ddc8ca7859 test-data/intersect_min_db.kmc_pre_bk

Binary file test-data/intersect_min_db.kmc_pre_bk has changed

diff -r c97f8a687258 -r 87ddc8ca7859 test-data/intersect_min_db.kmc_suf

Binary file test-data/intersect_min_db.kmc_suf has changed

diff -r c97f8a687258 -r 87ddc8ca7859 test-data/intersect_min_db.kmc_suf_bk

Binary file test-data/intersect_min_db.kmc_suf_bk has changed

diff -r c97f8a687258 -r 87ddc8ca7859 test-data/reduce_1_db.kmc_pre

Binary file test-data/reduce_1_db.kmc_pre has changed

diff -r c97f8a687258 -r 87ddc8ca7859 test-data/reduce_1_db.kmc_suf

Binary file test-data/reduce_1_db.kmc_suf has changed

diff -r c97f8a687258 -r 87ddc8ca7859 test-data/sort_1_db.kmc_suf

Binary file test-data/sort_1_db.kmc_suf has changed

diff -r c97f8a687258 -r 87ddc8ca7859 test-data/sort_2_db.kmc_pre

Binary file test-data/sort_2_db.kmc_pre has changed

diff -r c97f8a687258 -r 87ddc8ca7859 test-data/sort_2_db.kmc_suf

Binary file test-data/sort_2_db.kmc_suf has changed

diff -r c97f8a687258 -r 87ddc8ca7859 test-data/statistic_27.json_bk
--- a/test-data/statistic_27.json_bk Wed Oct 02 08:34:43 2024 +0000
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

@@ -1,15 +0,0 @@
-{
- "1st_stage": "0.077217s",
- "2nd_stage": "1.20559s",
- "Total": "1.28281s",
- "Tmp_size": "0MB",
- "Stats": {
- "#k-mers_below_min_threshold": 124352,
- "#k-mers_above_max_threshold": 0,
- "#Unique_k-mers": 186071,
- "#Unique_counted_k-mers": 61719,
- "#Total no. of k-mers": 283537,
- "#Total_reads": 2,
- "#Total_super-k-mers": 26721
- }
-}

diff -r c97f8a687258 -r 87ddc8ca7859 test-data/union_sum_db.kmc_pre

Binary file test-data/union_sum_db.kmc_pre has changed

diff -r c97f8a687258 -r 87ddc8ca7859 test-data/union_sum_db.kmc_suf

Binary file test-data/union_sum_db.kmc_suf has changed