| Previous changeset 4:ad4d42fabf32 (2020-01-31) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit d1f8cb0c56e082656c5d4a8729e612bdc5b6e3cc" |
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modified:
macros.xml transit_resampling.xml |
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| diff -r ad4d42fabf32 -r 885459e1c83b macros.xml --- a/macros.xml Fri Jan 31 10:48:01 2020 -0500 +++ b/macros.xml Sat Nov 27 09:49:19 2021 +0000 |
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| @@ -6,13 +6,19 @@ <yield /> </citations> </xml> + <xml name="bio_tools"> + <xrefs> + <xref type="bio.tools">transit</xref> + </xrefs> + </xml> <xml name="requirements"> <requirements> - <requirement type="package" version="@VERSION@">transit</requirement> + <requirement type="package" version="@TOOL_VERSION@">transit</requirement> <yield /> </requirements> </xml> - <token name="@VERSION@">3.0.2</token> + <token name="@TOOL_VERSION@">3.0.2</token> + <token name="@VERSION_SUFFIX@">1</token> <xml name="outputs"> <yield /> <data name="sites" from_work_dir="transit_out.txt" format="tabular" label="${tool.name} on ${on_string} Sites" /> |
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| diff -r ad4d42fabf32 -r 885459e1c83b transit_resampling.xml --- a/transit_resampling.xml Fri Jan 31 10:48:01 2020 -0500 +++ b/transit_resampling.xml Sat Nov 27 09:49:19 2021 +0000 |
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| @@ -1,6 +1,7 @@ <?xml version="1.0"?> -<tool id="transit_resampling" name="Resampling" version="@VERSION@+galaxy0"> +<tool id="transit_resampling" name="TRANSIT Resampling" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@"> <description>- determine per-gene p-values</description> + <expand macro="bio_tools"/> <macros> <import>macros.xml</import> </macros> @@ -38,7 +39,6 @@ <param name="controls" ftype="wig" value="transit-co1-rep1.wig,transit-co1-rep2.wig,transit-co1-rep3.wig" /> <param name="annotation" ftype="tabular" value="transit-in1.prot" /> <param name="samples" value="1000" /> - <param name="burnin" value="100" /> <param name="replicates" value="Replicates" /> <output name="sites" file="resampling-sites1.txt" ftype="tabular" compare="sim_size" /> </test> |