| Previous changeset 0:aacfbd7c4af6 (2019-02-09) Next changeset 2:f312d414f234 (2023-11-13) |
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Commit message:
"planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/slice_image/ commit 3d389fdec0db29cf6fbd783c0501455bf624fa90" |
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modified:
slice_image.py slice_image.xml |
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| diff -r aacfbd7c4af6 -r 8856a7c85e4c slice_image.py --- a/slice_image.py Sat Feb 09 14:46:50 2019 -0500 +++ b/slice_image.py Wed Dec 18 05:03:25 2019 -0500 |
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| @@ -8,10 +8,10 @@ import skimage.util import skimage.feature from scipy.stats import entropy as scipy_entropy - + def slice_image(input_file, out_folder, label=None, label_out_folder=None, window_size=64, stride=1, bg_thresh=1, limit_slices=False, n_thresh=5000, seed=None): - #TODO NOT Implemented:process labels + #TODO NOT Implemented:process labels # --> label and label_out_folder useless so far # primarily for testing purposes: |
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| diff -r aacfbd7c4af6 -r 8856a7c85e4c slice_image.xml --- a/slice_image.xml Sat Feb 09 14:46:50 2019 -0500 +++ b/slice_image.xml Wed Dec 18 05:03:25 2019 -0500 |
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| @@ -1,11 +1,12 @@ -<tool id="ip_slice_image" name="Slice Image" version="0.2"> +<tool id="ip_slice_image" name="Slice Image" version="0.3"> <description>into smaller patches</description> <requirements> <requirement type="package" version="0.14.2">scikit-image</requirement> <requirement type="package" version="1.15.4">numpy</requirement> - <!-- <requirement type="package" version="1.1.0">scipy</requirement> --> + <requirement type="package" version="1.1.0">scipy</requirement> + <requirement type="package" version="0.15.1">tifffile</requirement> </requirements> - <command> + <command detect_errors="aggressive"> <![CDATA[ mkdir ./out && python '$__tool_directory__/slice_image.py' |