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Commit message:
planemo upload for repository https://github.com/tbischler/PEAKachu commit 4a5c3c370df53a00aded3eaae40f3a8e4a263385-dirty |
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modified:
peakachu.xml |
| b |
| diff -r 49a5a2e86c84 -r 886f5adba83d peakachu.xml --- a/peakachu.xml Wed Jan 16 17:52:56 2019 -0500 +++ b/peakachu.xml Mon Feb 04 13:04:19 2019 -0500 |
| b |
| @@ -68,10 +68,10 @@ && if ls ./tmp_output/peak_tables/*.csv > /dev/null; then - cat ./tmp_output/peak_tables/*.csv | head -n 1 > peaks.tsv && + sed -n 1p ./tmp_output/peak_tables/*.csv > peaks.tsv && tail -n +2 -q ./tmp_output/peak_tables/*.csv >> peaks.tsv && mv peaks.tsv '$peak_tables' && - cat ./tmp_output/peak_annotations/*.gff | awk '/peak/ {print $0}' > peak_annotations.gff && + awk '/peak/ {print $0}' ./tmp_output/peak_annotations/*.gff > peak_annotations.gff && mv peak_annotations.gff '$peak_annotations' && mv ./tmp_output/plots/Initial*.png '$MA_plot'; else |