Repository 'qiime_extract_barcodes'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/qiime_extract_barcodes

Changeset 1:88a13a51747b (2018-10-30)
Previous changeset 0:c7eeac78cb64 (2017-08-05) Next changeset 2:e149f41155e1 (2019-12-05)
Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit a4b0969b33a68a0ea9ba12291f6694aec24f13ed
modified:
beta_diversity_through_plots_html_generation.py
test-data/make_otu_heatmap/basic_heatmap.svg
test-data/multiple_join_paired_ends/output_with_barcode/forward_1/fastqjoin.un1.fastq
test-data/multiple_join_paired_ends/output_with_barcode/forward_1/fastqjoin.un2.fastq
test-data/multiple_join_paired_ends/output_with_barcode/forward_2/fastqjoin.un1.fastq
test-data/multiple_join_paired_ends/output_with_barcode/forward_2/fastqjoin.un2.fastq
test-data/multiple_join_paired_ends/output_without_barcode/forward_1/fastqjoin.un1.fastq
test-data/multiple_join_paired_ends/output_without_barcode/forward_1/fastqjoin.un2.fastq
test-data/multiple_join_paired_ends/output_without_barcode/forward_2/fastqjoin.un1.fastq
test-data/multiple_join_paired_ends/output_without_barcode/forward_2/fastqjoin.un2.fastq
b
diff -r c7eeac78cb64 -r 88a13a51747b beta_diversity_through_plots_html_generation.py
--- a/beta_diversity_through_plots_html_generation.py Sat Aug 05 07:28:39 2017 -0400
+++ b/beta_diversity_through_plots_html_generation.py Tue Oct 30 19:59:19 2018 -0400
[
@@ -21,7 +21,7 @@
 
         for directory in dir_list:
             regexp_result = re.search(
-                '([a-zA-Z\_]*)_emperor_pcoa_plot',
+                r'([a-zA-Z\_]*)_emperor_pcoa_plot',
                 directory)
             metric = regexp_result.group(1)
             s += '\t\t\t\t<li>' + metric + ': '
b
diff -r c7eeac78cb64 -r 88a13a51747b test-data/make_otu_heatmap/basic_heatmap.svg
--- a/test-data/make_otu_heatmap/basic_heatmap.svg Sat Aug 05 07:28:39 2017 -0400
+++ b/test-data/make_otu_heatmap/basic_heatmap.svg Tue Oct 30 19:59:19 2018 -0400
b
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b
diff -r c7eeac78cb64 -r 88a13a51747b test-data/multiple_join_paired_ends/output_with_barcode/forward_1/fastqjoin.un1.fastq
--- a/test-data/multiple_join_paired_ends/output_with_barcode/forward_1/fastqjoin.un1.fastq Sat Aug 05 07:28:39 2017 -0400
+++ b/test-data/multiple_join_paired_ends/output_with_barcode/forward_1/fastqjoin.un1.fastq Tue Oct 30 19:59:19 2018 -0400
b
@@ -5,4 +5,4 @@
 @HWI-ST753:99:C038WACXX:4:1101:1357:1989 1:N:0:
 NACGGGGGGGGCAAGCGTTGTTCGGAATTACTGGGCGTAAAGGGTTCGTAGGTGGCCTACTAAGTCAGACGAGAGCTCACTCAGCATATCTGGCGCACTG
 +
-#1=DDFFFDDD@6@BBB8?B?BCBDBBDDCDCDD?BB79?ACC?+8?:8??B@@B#############################################
\ No newline at end of file
+#1=DDFFFDDD@6@BBB8?B?BCBDBBDDCDCDD?BB79?ACC?+8?:8??B@@B#############################################
b
diff -r c7eeac78cb64 -r 88a13a51747b test-data/multiple_join_paired_ends/output_with_barcode/forward_1/fastqjoin.un2.fastq
--- a/test-data/multiple_join_paired_ends/output_with_barcode/forward_1/fastqjoin.un2.fastq Sat Aug 05 07:28:39 2017 -0400
+++ b/test-data/multiple_join_paired_ends/output_with_barcode/forward_1/fastqjoin.un2.fastq Tue Oct 30 19:59:19 2018 -0400
b
@@ -5,4 +5,4 @@
 @HWI-ST753:99:C038WACXX:4:1101:1357:1989 2:N:0:
 ACGTGTACCCAAA
 +
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b
diff -r c7eeac78cb64 -r 88a13a51747b test-data/multiple_join_paired_ends/output_with_barcode/forward_2/fastqjoin.un1.fastq
--- a/test-data/multiple_join_paired_ends/output_with_barcode/forward_2/fastqjoin.un1.fastq Sat Aug 05 07:28:39 2017 -0400
+++ b/test-data/multiple_join_paired_ends/output_with_barcode/forward_2/fastqjoin.un1.fastq Tue Oct 30 19:59:19 2018 -0400
b
@@ -1,4 +1,4 @@
 @HWI-ST753:99:C038WACXX:4:1101:1357:1989 1:N:0:
 NACGGGGGGGGCAAGCGTTGTTCGGAATTACTGGGCGTAAAGGGTTCGTAGGTGGCCTACTAAGTCAGACGAGAGCTCACTCAGCATATCTGGCGCACTG
 +
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\ No newline at end of file
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b
diff -r c7eeac78cb64 -r 88a13a51747b test-data/multiple_join_paired_ends/output_with_barcode/forward_2/fastqjoin.un2.fastq
--- a/test-data/multiple_join_paired_ends/output_with_barcode/forward_2/fastqjoin.un2.fastq Sat Aug 05 07:28:39 2017 -0400
+++ b/test-data/multiple_join_paired_ends/output_with_barcode/forward_2/fastqjoin.un2.fastq Tue Oct 30 19:59:19 2018 -0400
b
@@ -1,4 +1,4 @@
 @HWI-ST753:99:C038WACXX:4:1101:1357:1989 2:N:0:
 NACGGGGGGGGCAAGCGTTGTTCGGAATTACTGGGCGTAAAGGGTTCGTAGGTGGCCTACTAAGTCAGACGAGAGCTCACTCAGCATATCTGGCGCACTG
 +
-#1=DDFFFDDD@6@BBB8?B?BCBDBBDDCDCDD?BB79?ACC?+8?:8??B@@B#############################################
\ No newline at end of file
+#1=DDFFFDDD@6@BBB8?B?BCBDBBDDCDCDD?BB79?ACC?+8?:8??B@@B#############################################
b
diff -r c7eeac78cb64 -r 88a13a51747b test-data/multiple_join_paired_ends/output_without_barcode/forward_1/fastqjoin.un1.fastq
--- a/test-data/multiple_join_paired_ends/output_without_barcode/forward_1/fastqjoin.un1.fastq Sat Aug 05 07:28:39 2017 -0400
+++ b/test-data/multiple_join_paired_ends/output_without_barcode/forward_1/fastqjoin.un1.fastq Tue Oct 30 19:59:19 2018 -0400
b
@@ -5,4 +5,4 @@
 @HWI-ST753:99:C038WACXX:4:1101:1357:1989 1:N:0:
 NACGGGGGGGGCAAGCGTTGTTCGGAATTACTGGGCGTAAAGGGTTCGTAGGTGGCCTACTAAGTCAGACGAGAGCTCACTCAGCATATCTGGCGCACTG
 +
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\ No newline at end of file
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b
diff -r c7eeac78cb64 -r 88a13a51747b test-data/multiple_join_paired_ends/output_without_barcode/forward_1/fastqjoin.un2.fastq
--- a/test-data/multiple_join_paired_ends/output_without_barcode/forward_1/fastqjoin.un2.fastq Sat Aug 05 07:28:39 2017 -0400
+++ b/test-data/multiple_join_paired_ends/output_without_barcode/forward_1/fastqjoin.un2.fastq Tue Oct 30 19:59:19 2018 -0400
b
@@ -5,4 +5,4 @@
 @HWI-ST753:99:C038WACXX:4:1101:1357:1989 2:N:0:
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 +
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\ No newline at end of file
+@CCFFFDEHHHGF
b
diff -r c7eeac78cb64 -r 88a13a51747b test-data/multiple_join_paired_ends/output_without_barcode/forward_2/fastqjoin.un1.fastq
--- a/test-data/multiple_join_paired_ends/output_without_barcode/forward_2/fastqjoin.un1.fastq Sat Aug 05 07:28:39 2017 -0400
+++ b/test-data/multiple_join_paired_ends/output_without_barcode/forward_2/fastqjoin.un1.fastq Tue Oct 30 19:59:19 2018 -0400
b
@@ -5,4 +5,4 @@
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b
diff -r c7eeac78cb64 -r 88a13a51747b test-data/multiple_join_paired_ends/output_without_barcode/forward_2/fastqjoin.un2.fastq
--- a/test-data/multiple_join_paired_ends/output_without_barcode/forward_2/fastqjoin.un2.fastq Sat Aug 05 07:28:39 2017 -0400
+++ b/test-data/multiple_join_paired_ends/output_without_barcode/forward_2/fastqjoin.un2.fastq Tue Oct 30 19:59:19 2018 -0400
b
@@ -5,4 +5,4 @@
 @HWI-ST753:99:C038WACXX:4:1101:1357:1989 2:N:0:
 ACGTGTACCCAAA
 +
-@CCFFFDEHHHGF
\ No newline at end of file
+@CCFFFDEHHHGF