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modified:
tassel.sh tassel.xml |
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| diff -r 5cd3fed90e93 -r 88ea6f8f664e tassel.sh --- a/tassel.sh Mon Jan 15 13:31:55 2024 +0000 +++ b/tassel.sh Tue Jan 16 10:59:25 2024 +0000 |
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| @@ -8,10 +8,6 @@ galaxyOutDir=$6; version=$(java -version 2>&1 | grep version) -if [[ ! $version =~ 1.8 ]]; then - echo "Java found: $version. Tassel 5.0 requires java 1.8..." >&2 - exit 1 -fi mkdir $galaxyOutDir |
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| diff -r 5cd3fed90e93 -r 88ea6f8f664e tassel.xml --- a/tassel.xml Mon Jan 15 13:31:55 2024 +0000 +++ b/tassel.xml Tue Jan 16 10:59:25 2024 +0000 |
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| @@ -1,13 +1,13 @@ <tool id="Tassel" name="Tassel" version="2.0.0"> <description>Software to evaluate traits associations, evolutionary patterns, and linkage disequilibrium</description> <requirements> - <requirement type="package" version="5.2.40">tassel</requirement> + <requirement type="package" version="5.2.89">tassel</requirement> </requirements> <stdio> <!-- [HELP] If no exit code rule is defined, the tool will stop if anything is written to STDERR --> <exit_code range="1:" level="fatal" /> </stdio> - <command>tassel.sh $analysis_opts.fonction_selector $output1 $output2 $output3 $log tmpdir$$/ + <command>$__tool_directory__/tassel.sh $analysis_opts.fonction_selector $output1 $output2 $output3 $log tmpdir$$/ #if $analysis_opts.fonction_selector == "mlm": -fork1 -h $hapmap -filterAlign -filterAlignMinFreq $filterAlignMinFreq -fork2 -r $analysis_opts.trait |