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Commit message:
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/hcluster_sg commit 588282bf5cbb9909ad9cd8c316ec33158c858727 |
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modified:
hcluster_sg.xml |
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| diff -r 176639d514ee -r 891cc66ea91b hcluster_sg.xml --- a/hcluster_sg.xml Fri Mar 24 12:32:37 2017 -0400 +++ b/hcluster_sg.xml Thu May 18 14:10:32 2017 -0400 |
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| @@ -3,8 +3,7 @@ <requirements> <requirement type="package" version="0.5.1">hcluster_sg</requirement> </requirements> - <command detect_errors="exit_code"> -<![CDATA[ + <command detect_errors="exit_code"><![CDATA[ hcluster_sg -w $w -s $s @@ -21,30 +20,29 @@ -L $L '$inputFile' > '$outputFile' -]]> - </command> + ]]></command> <inputs> <param name="inputFile" type="data" format="tabular" label="Weight file" help="3-columns format: id-1 id-2 integer-weight" /> - <param name="w" type="integer" min="0" value="20" label="Minimum edge weight" help="(-w)" /> - <param name="s" type="float" value="0.5" label="Minimum edge density between a join" help="(-s)" /> - <param name="m" type="integer" value="500" label="Maximum size" help="(-m)" /> - <param name="c" type="boolean" truevalue="-c" falsevalue="" label="Only find single-linkage clusters" help="Bypass h-cluster (-c)" /> - <param name="b" type="float" value="0.1" label="Breaking edge density" help="(-b)" /> + <param argument="-w" type="integer" min="0" value="20" label="Minimum edge weight" /> + <param argument="-s" type="float" value="0.5" label="Minimum edge density between a join" /> + <param argument="-m" type="integer" value="500" label="Maximum size" /> + <param argument="-c" type="boolean" truevalue="-c" falsevalue="" label="Only find single-linkage clusters" help="Bypass h-cluster" /> + <param argument="-b" type="float" value="0.1" label="Breaking edge density" /> <conditional name="O"> - <param name="O_selector" type="select" label="Use once-fail-inactive-forever mode" help="(-O)"> + <param name="O_selector" argument="-O" type="select" label="Use once-fail-inactive-forever mode"> <option value="-O">Yes</option> <option value="" selected="true">No</option> </param> <when value="-O"> - <param name="r" type="integer" value="5" label="Weight resolution" help="(-r)" /> + <param argument="-r" type="integer" value="5" label="Weight resolution" /> </when> <when value="" /> </conditional> - <param name="C" type="data" format="tabular" optional="true" label="Category file" help="(-C)" /> - <param name="L" type="integer" value="2" label="Stringency level" help="(-L)" /> + <param argument="-C" type="data" format="tabular" optional="true" label="Category file" /> + <param argument="-L" type="integer" value="2" label="Stringency level" /> </inputs> <outputs> - <data format="tabular" name="outputFile" label="${tool.name} on ${on_string}" /> + <data name="outputFile" format="tabular" label="${tool.name} on ${on_string}" /> </outputs> <tests> <test> @@ -57,13 +55,11 @@ <output name="outputFile" file="hcluster_sg2.txt" /> </test> </tests> - <help> -<![CDATA[ + <help><![CDATA[ Simple wrapper for `hcluster_sg`_. .. _hcluster_sg: https://github.com/douglasgscofield/hcluster -]]> - </help> + ]]></help> <citations> </citations> </tool> |