| Previous changeset 0:63b2a10b1001 (2019-02-09) Next changeset 2:22e573b7dcb1 (2022-02-26) |
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Commit message:
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/overlay_segmentation_mask/ commit b2acc1845a25828181597fe5b6982fe116a7796d |
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modified:
overlay_segmentation_mask.py overlay_segmentation_mask.xml |
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| diff -r 63b2a10b1001 -r 8ad39f493587 overlay_segmentation_mask.py --- a/overlay_segmentation_mask.py Sat Feb 09 14:41:11 2019 -0500 +++ b/overlay_segmentation_mask.py Mon Jul 22 05:03:51 2019 -0400 |
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| @@ -9,7 +9,7 @@ #TODO make importable by python script import skimage.io -import skimage.measure +import skimage.measure parser = argparse.ArgumentParser() parser.add_argument('input_file', type=argparse.FileType('r'), help='input file') @@ -38,4 +38,4 @@ plt.imshow(img) plt.contour(label, linewidths=args.thickness, colors=args.stroke_color) -fig.canvas.print_png(args.out_file) \ No newline at end of file +fig.canvas.print_png(args.out_file) |
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| diff -r 63b2a10b1001 -r 8ad39f493587 overlay_segmentation_mask.xml --- a/overlay_segmentation_mask.xml Sat Feb 09 14:41:11 2019 -0500 +++ b/overlay_segmentation_mask.xml Mon Jul 22 05:03:51 2019 -0400 |
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| @@ -1,10 +1,11 @@ -<tool id="ip_overlay_segmentation" name="Overlay Segmentation Mask" version="0.0.6"> +<tool id="ip_overlay_segmentation" name="Overlay Segmentation Mask" version="0.0.6"> <description>Overlay Segmentation Mask</description> <requirements> - <requirement type="package" version="0.14.2">scikit-image</requirement> + <requirement type="package" version="0.14.2">scikit-image</requirement> <requirement type="package" version="3.0.2">matplotlib</requirement> <requirement type="package" version="5.3.0">pillow</requirement> - <requirement type="package" version="0.10.0">tifffile</requirement> + <requirement type="package" version="0.15.1">tifffile</requirement> + <requirement type="package" version="1.16.0">numpy</requirement> </requirements> <command detect_errors="aggressive"><![CDATA[ python '$__tool_directory__/overlay_segmentation_mask.py' |