| Previous changeset 29:2f1019071464 (2023-07-20) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pangolin commit d17dfb7bfc974b5369cc20d4c51ae30685c877ab |
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modified:
pangolin.xml |
| b |
| diff -r 2f1019071464 -r 8ad84c5753ea pangolin.xml --- a/pangolin.xml Thu Jul 20 05:39:41 2023 +0000 +++ b/pangolin.xml Wed Mar 27 16:16:37 2024 +0000 |
| [ |
| @@ -1,8 +1,8 @@ -<tool id="pangolin" name="Pangolin" version="@TOOL_VERSION@+galaxy1" profile="20.01"> +<tool id="pangolin" name="Pangolin" version="@TOOL_VERSION@+galaxy2" profile="21.09"> <description>Phylogenetic Assignment of Outbreak Lineages</description> <macros> <token name="@TOOL_VERSION@">4.3</token> - <token name="@PANGOLIN_DATA_VERSION@">1.21</token> + <token name="@PANGOLIN_DATA_VERSION@">1.26</token> <token name="@CONSTELLATIONS_VERSION@">0.1.12</token> <!-- a regex describing the pangolin-data versions that this wrapper version is backwards-compatible with; can be used with the min_pangolin_version @@ -31,6 +31,9 @@ </param> </xml> </macros> + <xrefs> + <xref type="bio.tools">pangolin_cov-lineages</xref> + </xrefs> <requirements> <requirement type="package" version="@TOOL_VERSION@">pangolin</requirement> <!-- Pin also the versions of all core dependencies - the ones @@ -45,17 +48,17 @@ Wrapper updates are **explicitly encouraged** when new dependency versions become available. Also, please check for updated dependencies when updating the wrapper for other reasons. --> - <requirement type="package" version="0.3.17">scorpio</requirement> + <requirement type="package" version="0.3.19">scorpio</requirement> <requirement type="package" version="@PANGOLIN_DATA_VERSION@">pangolin-data</requirement> <requirement type="package" version="@CONSTELLATIONS_VERSION@">constellations</requirement> - <requirement type="package" version="0.6.2">usher</requirement> - <requirement type="package" version="1.2.0">gofasta</requirement> + <requirement type="package" version="0.6.3">usher</requirement> + <requirement type="package" version="1.2.1">gofasta</requirement> <requirement type="package" version="448">ucsc-fatovcf</requirement> - <requirement type="package" version="2.26">minimap2</requirement> + <requirement type="package" version="2.27">minimap2</requirement> <!-- wrapper-specific requirements to turn pangolin's native comma-separated output into tab-separated one and to truncate pangolin's all-versions output. --> - <requirement type="package" version="0.26.0">csvtk</requirement> + <requirement type="package" version="0.30.0">csvtk</requirement> <requirement type="package" version="3.11">grep</requirement> </requirements> <version_command><![CDATA[pangolin --version]]></version_command> |