| Previous changeset 1:6eaefb5f755a (2014-11-17) Next changeset 3:2ad64c5bb5f4 (2015-10-09) |
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Commit message:
planemo upload commit 00a7926c285bc4a339bd7deebf40b28f39c7d947-dirty |
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modified:
tool_dependencies.xml tophat_wrapper.xml |
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| diff -r 6eaefb5f755a -r 8afd8a379d5f tool_dependencies.xml --- a/tool_dependencies.xml Mon Nov 17 11:23:25 2014 -0500 +++ b/tool_dependencies.xml Tue Jul 21 16:01:00 2015 -0400 |
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| @@ -1,12 +1,12 @@ <?xml version="1.0"?> <tool_dependency> <package name="bowtie" version="0.12.7"> - <repository changeset_revision="028d22e7b70f" name="package_bowtie_0_12_7" owner="devteam" prior_installation_required="False" toolshed="http://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="9f9f38617a98" name="package_bowtie_0_12_7" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="samtools" version="0.1.18"> - <repository changeset_revision="171cd8bc208d" name="package_samtools_0_1_18" owner="devteam" prior_installation_required="False" toolshed="http://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="171cd8bc208d" name="package_samtools_0_1_18" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="tophat" version="1.4.0"> - <repository changeset_revision="0fea0c8cc6cf" name="package_tophat_1_4_0" owner="devteam" prior_installation_required="False" toolshed="http://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="0fea0c8cc6cf" name="package_tophat_1_4_0" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> </tool_dependency> |
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| diff -r 6eaefb5f755a -r 8afd8a379d5f tophat_wrapper.xml --- a/tophat_wrapper.xml Mon Nov 17 11:23:25 2014 -0500 +++ b/tophat_wrapper.xml Tue Jul 21 16:01:00 2015 -0400 |
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| @@ -560,4 +560,7 @@ --min-segment-intron The minimum intron length that may be found during split-segment search. The default is 50. --max-segment-intron The maximum intron length that may be found during split-segment search. The default is 500000. </help> + <citations> + <citation type="doi">10.1093/bioinformatics/btp120</citation> + </citations> </tool> |