| Previous changeset 0:f4394bbdf433 (2022-08-22) Next changeset 2:06bcf65179fb (2023-02-23) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/getorganelle commit 2abcba81319a6f37dfd31270211bd2ab35104510 |
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modified:
get_organelle_from_reads.xml |
| b |
| diff -r f4394bbdf433 -r 8b330a577046 get_organelle_from_reads.xml --- a/get_organelle_from_reads.xml Mon Aug 22 09:59:03 2022 +0000 +++ b/get_organelle_from_reads.xml Wed Sep 28 22:05:41 2022 +0000 |
| [ |
| @@ -21,7 +21,7 @@ #set ext = '.fastq.gz' #end if #set $in1 = $fastq_input.fastq_input1 - #set $in1_name = re.sub('[^\w\-\s]', '_', str($fastq_input.fastq_input1.name)) + $ext + #set $in1_name = re.sub('[^\w\-\.]', '_', str($fastq_input.fastq_input1.name)) + $ext ln -s '$in1' '$in1_name' && #else if str($fastq_input.fastq_input_selector) == 'paired': #if $fastq_input.fastq_input1.ext.endswith('.gz'): @@ -29,8 +29,8 @@ #end if #set $in1 = $fastq_input.fastq_input1 #set $in2 = $fastq_input.fastq_input2 - #set $in1_name = re.sub('[^\w\-\s\._]', '_', str($fastq_input.fastq_input1.name)) + $ext - #set $in2_name = re.sub('[^\w\-\s\._]', '_', str($fastq_input.fastq_input2.name)) + $ext + #set $in1_name = re.sub('[^\w\-\.]', '_', str($fastq_input.fastq_input1.name)) + $ext + #set $in2_name = re.sub('[^\w\-\.]', '_', str($fastq_input.fastq_input2.name)) + $ext ln -s '$in1' '$in1_name' && ln -s '$in2' '$in2_name' && #else if str($fastq_input.fastq_input_selector) == 'paired_collection': @@ -39,8 +39,8 @@ #end if #set $in1 = $fastq_input.paired_input.forward #set $in2 = $fastq_input.paired_input.reverse - #set $in1_name = re.sub('[^\w\-\s\._]', '_', str($fastq_input.paired_input.name)) + $ext - #set $in2_name = re.sub('[^\w\-\s\._]', '_', str("%s_%s" % ($fastq_input.paired_input.name, "R2"))) + $ext + #set $in1_name = re.sub('[^\w\-\.]', '_', str($fastq_input.paired_input.name)) + $ext + #set $in2_name = re.sub('[^\w\-\.]', '_', str("%s_%s" % ($fastq_input.paired_input.name, "R2"))) + $ext ln -s '$in1' '$in1_name' && ln -s '$in2' '$in2_name' && #end if |