Repository 'trinity_samples_qccheck'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/trinity_samples_qccheck

Changeset 6:8bec0d476fa0 (2017-08-28)
Previous changeset 5:36681c1ad6d7 (2017-03-31) Next changeset 7:77983b40ffb4 (2017-12-15)
Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit bc4ea54f0deec4ddec8e6cf79fd547491e165686
modified:
samples_qccheck.xml
added:
test-data/count/kallisto/abundance.tsv
test-data/count/kallisto/abundance.tsv.genes
test-data/count/kallisto/abundance_B.tsv
test-data/count/kallisto/abundance_B.tsv.genes
b
diff -r 36681c1ad6d7 -r 8bec0d476fa0 samples_qccheck.xml
--- a/samples_qccheck.xml Fri Mar 31 11:35:49 2017 -0400
+++ b/samples_qccheck.xml Mon Aug 28 16:55:49 2017 -0400
[
@@ -6,6 +6,7 @@
     <expand macro="requirements">
         <requirement type="package" version="2.34.0">bioconductor-biobase</requirement>
         <requirement type="package" version="2.6.0">bioconductor-qvalue</requirement>
+        <requirement type="package" version="2.0.6">r-cluster</requirement>
     </expand>
     <command detect_errors="aggressive"><![CDATA[
 
b
diff -r 36681c1ad6d7 -r 8bec0d476fa0 test-data/count/kallisto/abundance.tsv
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/count/kallisto/abundance.tsv Mon Aug 28 16:55:49 2017 -0400
b
@@ -0,0 +1,8 @@
+target_id length eff_length est_counts tpm
+TRINITY_DN1_c0_g1_i1 380 133.091 13 114025
+TRINITY_DN0_c0_g1_i1 229 31.75 7 257370
+TRINITY_DN2_c0_g1_i1 279 55.7143 1 20952.6
+TRINITY_DN2_c1_g1_i1 541 279.667 15 62611.6
+TRINITY_DN2_c2_g1_i1 240 42.75 4 109227
+TRINITY_DN2_c3_g1_i1 202 19 0 0
+TRINITY_DN3_c0_g1_i1 216 18.75 7 435814
b
diff -r 36681c1ad6d7 -r 8bec0d476fa0 test-data/count/kallisto/abundance.tsv.genes
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/count/kallisto/abundance.tsv.genes Mon Aug 28 16:55:49 2017 -0400
b
@@ -0,0 +1,8 @@
+target_id length eff_length est_counts tpm
+TRINITY_DN3_c0_g1 216.00 18.75 7.00 435814.00
+TRINITY_DN2_c2_g1 240.00 42.75 4.00 109227.00
+TRINITY_DN2_c3_g1 202.00 19.00 0.00 0.00
+TRINITY_DN0_c0_g1 229.00 31.75 7.00 257370.00
+TRINITY_DN2_c0_g1 279.00 55.71 1.00 20952.60
+TRINITY_DN1_c0_g1 380.00 133.09 13.00 114025.00
+TRINITY_DN2_c1_g1 541.00 279.67 15.00 62611.60
b
diff -r 36681c1ad6d7 -r 8bec0d476fa0 test-data/count/kallisto/abundance_B.tsv
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/count/kallisto/abundance_B.tsv Mon Aug 28 16:55:49 2017 -0400
b
@@ -0,0 +1,8 @@
+target_id length eff_length est_counts tpm
+TRINITY_DN1_c0_g1_i1 229 31.75 7 257370
+TRINITY_DN0_c0_g1_i1 380 133.091 13 114025
+TRINITY_DN2_c0_g1_i1 279 55.7143 1 20952.6
+TRINITY_DN2_c2_g1_i1 541 279.667 15 62611.6
+TRINITY_DN2_c1_g1_i1 240 42.75 4 109227
+TRINITY_DN2_c3_g1_i1 202 19 0 0
+TRINITY_DN3_c0_g1_i1 216 18.75 7 435814
b
diff -r 36681c1ad6d7 -r 8bec0d476fa0 test-data/count/kallisto/abundance_B.tsv.genes
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/count/kallisto/abundance_B.tsv.genes Mon Aug 28 16:55:49 2017 -0400
b
@@ -0,0 +1,8 @@
+target_id length eff_length est_counts tpm
+TRINITY_DN3_c0_g1 216.00 18.75 7.00 435814.00
+TRINITY_DN2_c1_g1 240.00 42.75 4.00 109227.00
+TRINITY_DN2_c3_g1 202.00 19.00 0.00 0.00
+TRINITY_DN0_c0_g1 380.00 133.09 13.00 114025.00
+TRINITY_DN2_c0_g1 279.00 55.71 1.00 20952.60
+TRINITY_DN1_c0_g1 229.00 31.75 7.00 257370.00
+TRINITY_DN2_c2_g1 541.00 279.67 15.00 62611.60