| Next changeset 1:7b6d9412c7f8 (2019-07-22) |
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Commit message:
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/image_info/ commit 982cc5470b2032b5b85077500c17a020d0d25fd6 |
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added:
image_info.xml test-data/input.tiff test-data/res.txt |
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| diff -r 000000000000 -r 8c25d4ff0b51 image_info.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/image_info.xml Fri Jul 19 07:29:08 2019 -0400 |
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| @@ -0,0 +1,31 @@ +<tool id="ip_imageinfo" name="Image Info" version="0.1"> + <description>Show Image Info</description> + <requirements> + <requirement type="package" version="5.7.1">bftools</requirement> + </requirements> + <command> + <![CDATA[ + showinf '$input_file' -no-upgrade -minmax -nopix > '$output' + ]]> + </command> + <inputs> + <param label="Input Image" name="input_file" type="data" format="tiff,tif,png,jpeg,bmp"/> + </inputs> + <outputs> + <data format="txt" name="output"/> + </outputs> + <tests> + <test> + <param name="input_file" value="input.tiff" /> + <output name="output" value="res.txt" ftype="txt" compare="diff" lines_diff="6"/> + </test> + </tests> + <help> + **What it does** + + Extracts metadata from an image. + </help> + <citations> + <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> + </citations> +</tool> |
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| diff -r 000000000000 -r 8c25d4ff0b51 test-data/input.tiff |
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| Binary file test-data/input.tiff has changed |
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| diff -r 000000000000 -r 8c25d4ff0b51 test-data/res.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/res.txt Fri Jul 19 07:29:08 2019 -0400 |
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| @@ -0,0 +1,51 @@ +Checking file format [Tagged Image File Format] +Initializing reader +TiffDelegateReader initializing input.tiff +Reading IFDs +Populating metadata +Checking comment style +Populating OME metadata +Initialization took 0.068s + +Reading core metadata +filename = input.tiff +Series count = 1 +Series #0 : + Image count = 1 + RGB = true (4) + Interleaved = false + Indexed = false (false color) + Width = 265 + Height = 530 + SizeZ = 1 + SizeT = 1 + SizeC = 4 (effectively 1) + Thumbnail size = 64 x 128 + Endianness = intel (little) + Dimension order = XYCZT (certain) + Pixel type = uint16 + Valid bits per pixel = 16 + Metadata complete = true + Thumbnail series = false + ----- + Plane #0 <=> Z 0, C 0, T 0 + + +Reading global metadata +BitsPerSample: 16 +Compression: Uncompressed +DateTime: 2018:12:06 12:57:33 +ExtraSamples: 1 +ImageLength: 530 +ImageWidth: 265 +MetaDataPhotometricInterpretation: RGB +MetaMorph: no +NewSubfileType: 0 +NumberOfChannels: 4 +PhotometricInterpretation: RGB +PlanarConfiguration: Chunky +SampleFormat: unsigned integer +SamplesPerPixel: 4 +Software: tifffile.py + +Reading metadata |