| Previous changeset 2:d0e7cc22351f (2017-10-20) Next changeset 4:3cb69f2ecea2 (2019-09-11) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit 23fab16cd40acbd5b0e9d640ed3858040db7a622 |
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modified:
crossmap_wig.xml macros.xml |
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| diff -r d0e7cc22351f -r 8c26026e7ad9 crossmap_wig.xml --- a/crossmap_wig.xml Fri Oct 20 11:33:40 2017 -0400 +++ b/crossmap_wig.xml Thu May 24 19:10:34 2018 -0400 |
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| @@ -1,4 +1,4 @@ -<tool id="crossmap_wig" name="CrossMap Wig" version="@WRAPPER_VERSION@-0"> +<tool id="crossmap_wig" name="CrossMap Wig" version="@WRAPPER_VERSION@"> <description>Convert genome coordinates or annotation files between genome assemblies</description> <macros> <import>macros.xml</import> @@ -10,10 +10,7 @@ CrossMap.py wig '${chain_source.input_chain}' '${input}' -'${output}' - -&& mv '${output}.bw' '${output}' -&& mv '${output}.sorted.bgr' '${output2}' +output ]]></command> <inputs> @@ -23,8 +20,8 @@ </inputs> <outputs> - <data name="output" format="wig" label="${tool.name} on ${on_string}" /> - <data name="output2" format="bedgraph" label="${tool.name} (bedgraph) on ${on_string}" /> + <data name="output" format="bigwig" label="${tool.name} on ${on_string}" from_work_dir="output.bw" /> + <data name="output2" format="bedgraph" label="${tool.name} (bedgraph) on ${on_string}" from_work_dir="output.sorted.bgr" /> </outputs> <tests> @@ -59,7 +56,6 @@ wigToBigWig tool. We export files in bedGraph because it is usually much smaller than file in wiggle format, and more importantly, CrossMap internally transforms wiggle into bedGraph to increase running speed. - ]]></help> <citations> |
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| diff -r d0e7cc22351f -r 8c26026e7ad9 macros.xml --- a/macros.xml Fri Oct 20 11:33:40 2017 -0400 +++ b/macros.xml Thu May 24 19:10:34 2018 -0400 |
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| @@ -2,11 +2,11 @@ <macros> <xml name="requirements"> <requirements> - <requirement type="package" version="0.2.5">crossmap</requirement> + <requirement type="package" version="0.2.7">crossmap</requirement> <yield/> </requirements> </xml> - <token name="@WRAPPER_VERSION@">0.2.5</token> + <token name="@WRAPPER_VERSION@">0.2.7</token> <xml name="stdio"> <stdio> <regex match="Aborted (core dumped)" source="stdout" level="fatal"/> |