| Previous changeset 3:0b201de108b9 (2014-12-12) Next changeset 5:2d094334f61e (2015-07-21) |
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Commit message:
Uploaded |
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modified:
rgFastQC.py test-data/fastqc_data2.txt test-data/fastqc_report.html test-data/fastqc_report2.html |
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| diff -r 0b201de108b9 -r 8c650f7f76e9 rgFastQC.py --- a/rgFastQC.py Fri Dec 12 10:55:57 2014 -0500 +++ b/rgFastQC.py Mon Feb 09 09:56:10 2015 -0500 |
| [ |
| @@ -79,7 +79,14 @@ # Replace unwanted or problematic charaters in the input file name self.fastqinfilename = re.sub(ur'[^a-zA-Z0-9_\-\.]', '_', os.path.basename(infname)) - + # check that the symbolic link gets a proper ending, fastqc seems to ignore the given format otherwise + if 'fastq' in opts.informat: + # with fastq the .ext is ignored, but when a format is actually passed it must comply with fastqc's + # accepted formats.. + opts.informat = 'fastq' + elif not self.fastqinfilename.endswith(opts.informat): + self.fastqinfilename += '.%s' % opts.informat + # Build the Commandline from the given parameters command_line = [opts.executable, '--outdir %s' % opts.outputdir] if opts.contaminants != None: @@ -89,6 +96,7 @@ command_line.append('--quiet') command_line.append('--extract') # to access the output text file command_line.append(self.fastqinfilename) + command_line.append('-f %s' % opts.informat) self.command_line = ' '.join(command_line) def copy_output_file_to_dataset(self): |
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| diff -r 0b201de108b9 -r 8c650f7f76e9 test-data/fastqc_data2.txt --- a/test-data/fastqc_data2.txt Fri Dec 12 10:55:57 2014 -0500 +++ b/test-data/fastqc_data2.txt Mon Feb 09 09:56:10 2015 -0500 |
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| @@ -2770,8 +2770,8 @@ AAGATGGTACCACTGCACTCCAGCCTGAGCGATAGCACAAAAAAAAAAAACAAA 1 0.02 No Hit CCTCTAATATGAGCTTTGGGAGAAAAGTTTTAAAGTATTTGATAACCATGATTC 1 0.02 No Hit AAAGCACCAGGGACAAATCCTGGAAAAACAGAGATATGTGACCTTTCATACAGG 1 0.02 No Hit +TCCAGATCTCCTCATGGTAGAATGGCAGGATCAGCCAGGCATGGGGGGTGATAC 1 0.02 No Hit ATCTATATATGAAGGAATACAACTTGGCCACAAAAAAGGAACGAATTAATGGAA 1 0.02 No Hit -TCCAGATCTCCTCATGGTAGAATGGCAGGATCAGCCAGGCATGGGGGGTGATAC 1 0.02 No Hit GGGTGGCTTCCCGTGCGGCAGCCTGGCGACGCTCTGGGACCTAGGGGGTGGGGG 1 0.02 No Hit GGCGACACATGGAGCTGGCCCAGCAAGAGGTTCTAACATCAGTGACAGATAGGA 1 0.02 No Hit AGCACAACAACCCAAACCACCCCAGCCTACACAGAGAAATTCAAGAACCTAAGA 1 0.02 No Hit |
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| diff -r 0b201de108b9 -r 8c650f7f76e9 test-data/fastqc_report.html --- a/test-data/fastqc_report.html Fri Dec 12 10:55:57 2014 -0500 +++ b/test-data/fastqc_report.html Mon Feb 09 09:56:10 2015 -0500 |
| [ |
| b'@@ -1,2 +1,187 @@\n-<html><head>\n-<meta http-equiv="content-type" content="text/html; charset=windows-1252"></head><body>1000gsample.fastq FastQC Report<div class="header"><div id="header_title"><img alt="FastQC" src="data:image/png;base64,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">FastQC Report</div><div id="header_filename">Wed 22 Oct 2014<br>1000gsample.fastq</div></div><div class="summary"><h2>Summary</h2><ul><li><img alt="[PASS]" src="data:image/png;base64,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"><a href="#M0">Basic Statistics</a></li><li><img alt="[WARNING]" src="data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAACAAAAAgCAYAAABzenr0AAAEpklEQVR42s1XfUyUdRz/URrktNpaW/aHW1LLNdN0+U9WSzdfcq31/uLrWvZP+Y/2T+mc54GplSCOt4CBgqicpICGwokvSYkc3B3nQJxmBSo0K6fsiJe759Pn+zzccRx3xyGwvO07fvye5/f9fH7f90cBUP+nDP+QSd1XZ1LT6hPU/FqzWi4ia9mTZ2NGwL'..b'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" alt="Adapter graph" width="800" height="600"/></p></div><div class="module"><h2 id="M11"><img src="data:image/png;base64,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" alt="[OK]"/>Kmer Content</h2><p>No overrepresented Kmers</p></div></div><div class="footer">Produced by <a href="http://www.bioinformatics.babraham.ac.uk/projects/fastqc/">FastQC</a> (version 0.11.2)</div></body></html>\n\\ No newline at end of file\n' |
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| diff -r 0b201de108b9 -r 8c650f7f76e9 test-data/fastqc_report2.html --- a/test-data/fastqc_report2.html Fri Dec 12 10:55:57 2014 -0500 +++ b/test-data/fastqc_report2.html Mon Feb 09 09:56:10 2015 -0500 |
| [ |
| b'@@ -1,2 +1,187 @@\n-<html><head>\n-<meta http-equiv="content-type" content="text/html; charset=windows-1252"></head><body>1000gsample.fastq FastQC Report<div class="header"><div id="header_title"><img alt="FastQC" src="data:image/png;base64,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">FastQC Report</div><div id="header_filename">Thu 23 Oct 2014<br>1000gsample.fastq</div></div><div class="summary"><h2>Summary</h2><ul><li><img alt="[PASS]" src="data:image/png;base64,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"><a href="#M0">Basic Statistics</a></li><li><img alt="[WARNING]" src="data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAACAAAAAgCAYAAABzenr0AAAEpklEQVR42s1XfUyUdRz/URrktNpaW/aHW1LLNdN0+U9WSzdfcq31/uLrWvZP+Y/2T+mc54GplSCOt4CBgqicpICGwokvSYkc3B3nQJxmBSo0K6fsiJe759Pn+zzccRx3xyGwvO07fvye5/f9fH7f90cBUP+nDP+QSd1XZ1LT6hPU/FqzWi4ia9mTZ2NGwL'..b'99P3TvxtuYG1W7MM/POryridPnjx58uRpsE8ffOTzm3FbQGBV7SePPXjDT483fbrmwY+++6kPXfPQjV7La3mtYb3Wwx87fOKzhx++/cijXzjyqy+t/eZra0/cuf67u9d//53Sp/eduvU9fzg0+79VL+C1vJbX8loLfK23n372pz9m+Gm/ngPLzMzMbPQTWGZmZmadBdY0608RmpmZmQms/3dVrt+DZWZmZiawupdS0y0t+9rEYqPXmuxep7fJpLAh3IaBl8me7AOxEj5P2ljLexsG3uZYreyfG2HLefncGOXnRtVttVxW31eqEhIk4fOy5ePJmrZL+5si7Y10emvsvBFiXqXqS0nLWynSSvs8aXkjZ/+PPHwb5r0Zw7dhLitwLtk/N6qsLj43at9m3iCuvQ27Pq+uPzeqPpYubsOqt9/F50bVf2hdf1xdf24Ezij7l8RIN7uV5XNj6IGV5dWbXrZp9Co9vEst30JyYDV6rX6+YSe/M9mtpp8nWaKnT6sLup8vyjEH16nVxedGD99gBnJePjd8blTdVn1aeb7RC6yWn6DJ99lN213CFVgLDKyer8x1cUlcYHVkdf1Nbu7td/qoWYHlc2NR51V1lbE3a+UCq+tHOLX/D6DRnZg7rTb3nDatwISPJeYVhxNYfd5t10P0tPk8Sfi4uvui3M//Eh3IJYp+vlt39LlR9XF1FPqBu2ayf90IP9Kx04+r068bxduwu68bvT2ObTiBNdrHYPVZZlnutO7tUWLtvwE0+m9pWQKrh2/VHT0oauG3YdePpViUtZC66uFTcTTnNYQrWD3cF9/p58YCb8MeHrvZ6edh7bm0ao+lCKx+7lhM/hm9ngOrZY119HENIbB6+1rc/vNkpQLL54bzGnJgdfqIpbkrSf1cJB5BYJXeVn1aedpj+IHV/lU6RZN/1iD5Em4/gdX0f28t9q60Hv5HYQ/ftmtvw2X8JlpbPKOpq+7QmNuw0/Ma608RTnu/0Nj/x9X1T0f2fHd/b3fBZyEW8Huwhvybn5IvKfX2m7raPDgs+T1MPtnufjdV6WMO8nIxb7Drj6vP27AHq+rIOrV6+Nzo+pvowm/D6Uh/N1VHV5V6+7oxHe/vEgtET2+PE81wj9bUzMzMzPIWm5vAzMzMTGCZmZmZCSwzMzMzgWVmZmZmAsvMzMxMYJmZmZkJLDMzMzMTWGZmZmYCy8zMzExgmZmN5wti9b9tkvyPoHX0z3qYmcAys2E1RPt/z6vrf99+gIHV5t0TWGYCy8zGH1gZv/ePLB0ElpkJLDPLHFhVV7aKz3z7z8WXr31rc68Yfg/jX3jufQh/FIHnlyqRLx9+OxrLTGCZ2SoGVrFRSpup6g/xb632alDTFy5WTvijiHk/awOr0YcpsMwElpmNP7AC15YCLRXzt8nPb//C8a/SEZH2npiZwDKzkQRWzPNL7/xaisBqdBeewDIzgWVmiwmsQEwM/ApWyyoSWGYmsMysbWD18xisrgOr9kpb/AOnSpWEx2CpKzOBZWYrGljT5j9FWPyryJ8i7C6wIj+K+J/+C39ckW9HYJkJLDMzK0/PtHL1m9zNBJaZmaVHmBvBzASWmZnAMjOBZWZmZiawzMzMzFZz/wPSVmyA7bXKLgAAAABJRU5ErkJg" alt="Adapter graph" width="800" height="600"/></p></div><div class="module"><h2 id="M11"><img src="data:image/png;base64,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" alt="[OK]"/>Kmer Content</h2><p>No overrepresented Kmers</p></div></div><div class="footer">Produced by <a href="http://www.bioinformatics.babraham.ac.uk/projects/fastqc/">FastQC</a> (version 0.11.2)</div></body></html>\n\\ No newline at end of file\n' |