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Commit message:
Uploaded |
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modified:
DC_Genotyper.pl |
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| diff -r 845a87ad254a -r 8cc26598eeac DC_Genotyper.pl --- a/DC_Genotyper.pl Sat Sep 27 05:38:17 2014 -0400 +++ b/DC_Genotyper.pl Sat Sep 27 05:49:23 2014 -0400 |
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| @@ -25,7 +25,7 @@ #################### # t: target file # b: bam file -# R: 2bit version of reference fasta. +# R: reference genome files for twobit and IGV. # p: number of threads. # s: dbsnp file # m: minimal coverage (defaults 400x) @@ -40,7 +40,7 @@ if (!defined($opts{'R'})) { die("Reference Genomes not specified\n"); } -my @refgenomes = split(",",$opts{'r'}); +my @refgenomes = split(",",$opts{'R'}); if (!-e $refgenomes[0]) { die("'$refgenomes[0]' is not a valid file path."); } |