| Previous changeset 0:0d71d9467847 (2015-04-22) Next changeset 2:24c5d43cb545 (2017-05-09) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/samtools/samtools_stats commit a1517c9d22029095120643bbe2c8fa53754dd2b7 |
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modified:
tool_dependencies.xml |
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removed:
samtools_stats_tool_test_output.html |
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| diff -r 0d71d9467847 -r 8cfc17e27132 samtools_stats_tool_test_output.html --- a/samtools_stats_tool_test_output.html Wed Apr 22 10:29:35 2015 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
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| b'@@ -1,372 +0,0 @@\n-<!DOCTYPE html>\n-<html lang="en">\n- <head>\n- <meta charset="utf-8">\n- <meta http-equiv="X-UA-Compatible" content="IE=edge">\n- <meta name="viewport" content="width=device-width, initial-scale=1">\n- <title>Tool Test Results (powered by Planemo)</title>\n-\n- <!-- Bootstrap -->\n- <style>/*!\n- * Bootstrap v3.3.1 (http://getbootstrap.com)\n- * Copyright 2011-2014 Twitter, Inc.\n- * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)\n- *//*! normalize.css v3.0.2 | MIT License | git.io/normalize */html{font-family:sans-serif;-webkit-text-size-adjust:100%;-ms-text-size-adjust:100%}body{margin:0}article,aside,details,figcaption,figure,footer,header,hgroup,main,menu,nav,section,summary{display:block}audio,canvas,progress,video{display:inline-block;vertical-align:baseline}audio:not([controls]){display:none;height:0}[hidden],template{display:none}a{background-color:transparent}a:active,a:hover{outline:0}abbr[title]{border-bottom:1px dotted}b,strong{font-weight:700}dfn{font-style:italic}h1{margin:.67em 0;font-size:2em}mark{color:#000;background:#ff0}small{font-size:80%}sub,sup{position:relative;font-size:75%;line-height:0;vertical-align:baseline}sup{top:-.5em}sub{bottom:-.25em}img{border:0}svg:not(:root){overflow:hidden}figure{margin:1em 40px}hr{height:0;-webkit-box-sizing:content-box;-moz-box-sizing:content-box;box-sizing:content-box}pre{overflow:auto}code,kbd,pre,samp{font-family:monospace,monospace;font-size:1em}button,input,optgroup,select,textarea{margin:0;font:inherit;color:inherit}button{overflow:visible}button,select{text-transform:none}button,html input[type=button],input[type=reset],input[type=submit]{-webkit-appearance:button;cursor:pointer}button[disabled],html input[disabled]{cursor:default}button::-moz-focus-inner,input::-moz-focus-inner{padding:0;border:0}input{line-height:normal}input[type=checkbox],input[type=radio]{-webkit-box-sizing:border-box;-moz-box-sizing:border-box;box-sizing:border-box;padding:0}input[type=number]::-webkit-inner-spin-button,input[type=number]::-webkit-outer-spin-button{height:auto}input[type=search]{-webkit-box-sizing:content-box;-moz-box-sizing:content-box;box-sizing:content-box;-webkit-appearance:textfield}input[type=search]::-webkit-search-cancel-button,input[type=search]::-webkit-search-decoration{-webkit-appearance:none}fieldset{padding:.35em .625em .75em;margin:0 2px;border:1px solid silver}legend{padding:0;border:0}textarea{overflow:auto}optgroup{font-weight:700}table{border-spacing:0;border-collapse:collapse}td,th{padding:0}/*! Source: https://github.com/h5bp/html5-boilerplate/blob/master/src/css/main.css */@media print{*,:before,:after{color:#000!important;text-shadow:none!important;background:transparent!important;-webkit-box-shadow:none!important;box-shadow:none!important}a,a:visited{text-decoration:underline}a[href]:after{content:" (" attr(href) ")"}abbr[title]:after{content:" (" attr(title) ")"}a[href^="#"]:after,a[href^="javascript:"]:after{content:""}pre,blockquote{border:1px solid #999;page-break-inside:avoid}thead{display:table-header-group}tr,img{page-break-inside:avoid}img{max-width:100%!important}p,h2,h3{orphans:3;widows:3}h2,h3{page-break-after:avoid}select{background:#fff!important}.navbar{display:none}.btn>.caret,.dropup>.btn>.caret{border-top-color:#000!important}.label{border:1px solid #000}.table{border-collapse:collapse!important}.table td,.table th{background-color:#fff!important}.table-bordered th,.table-bordered td{border:1px solid #ddd!important}}@font-face{font-family:\'Glyphicons Halflings\';src:url(../fonts/glyphicons-halflings-regular.eot);src:url(../fonts/glyphicons-halflings-regular.eot?#iefix) format(\'embedded-opentype\'),url(../fonts/glyphicons-halflings-regular.woff) format(\'woff\'),url(../fonts/glyphicons-halflings-regular.ttf) format(\'truetype\'),url(../fonts/glyphicons-halflings-regular.svg#glyphicons_halflingsregular) format(\'svg\')}.glyphicon{position:relative;top:1px;display:inline-block;font-family:\'G'..b'/2z/ntdb9g2n7tq6_bcq4dj9hj9r0000gn/T/tmp69oNhW/tmp/tmpcOV73W /var/folders/2z/ntdb9g2n7tq6_bcq4dj9hj9r0000gn/T/tmp69oNhW/job_working_directory/000/6/galaxy.json /var/folders/2z/ntdb9g2n7tq6_bcq4dj9hj9r0000gn/T/tmp69oNhW/job_working_directory/000/6/metadata_in_HistoryDatasetAssociation_6_uh9zmy,/var/folders/2z/ntdb9g2n7tq6_bcq4dj9hj9r0000gn/T/tmp69oNhW/job_working_directory/000/6/metadata_kwds_HistoryDatasetAssociation_6_6GLt0N,/var/folders/2z/ntdb9g2n7tq6_bcq4dj9hj9r0000gn/T/tmp69oNhW/job_working_directory/000/6/metadata_out_HistoryDatasetAssociation_6_OK7DHx,/var/folders/2z/ntdb9g2n7tq6_bcq4dj9hj9r0000gn/T/tmp69oNhW/job_working_directory/000/6/metadata_results_HistoryDatasetAssociation_6_GeXlkW,/var/folders/2z/ntdb9g2n7tq6_bcq4dj9hj9r0000gn/T/tmp69oNhW/files/000/dataset_6.dat,/var/folders/2z/ntdb9g2n7tq6_bcq4dj9hj9r0000gn/T/tmp69oNhW/job_working_directory/000/6/metadata_override_HistoryDatasetAssociation_6_ZyuaJN; sh -c \\"exit $return_code\\"\\ngalaxy.jobs.runners.local: DEBUG: (6) executing job script: /var/folders/2z/ntdb9g2n7tq6_bcq4dj9hj9r0000gn/T/tmp69oNhW/job_working_directory/000/6/galaxy_6.sh\\ngalaxy.jobs: DEBUG: (6) Persisting job destination (destination id: local:///)\\nrequests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\\nrequests.packages.urllib3.connectionpool: DEBUG: \\"GET /api/jobs/fa6d20d0fb68383f?key=73391df1185a0911acd55c3f7fae680e HTTP/1.1\\" 200 None\\ngalaxy.jobs.runners.local: DEBUG: execution finished: /var/folders/2z/ntdb9g2n7tq6_bcq4dj9hj9r0000gn/T/tmp69oNhW/job_working_directory/000/6/galaxy_6.sh\\nrequests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\\nrequests.packages.urllib3.connectionpool: DEBUG: \\"GET /api/jobs/fa6d20d0fb68383f?key=73391df1185a0911acd55c3f7fae680e HTTP/1.1\\" 200 None\\ngalaxy.jobs: DEBUG: job 6 ended (finish() executed in (6680.679 ms))\\nrequests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\\nrequests.packages.urllib3.connectionpool: DEBUG: \\"GET /api/jobs/fa6d20d0fb68383f?key=73391df1185a0911acd55c3f7fae680e HTTP/1.1\\" 200 None\\nrequests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\\nrequests.packages.urllib3.connectionpool: DEBUG: \\"GET /api/jobs/fa6d20d0fb68383f?full=true&key=73391df1185a0911acd55c3f7fae680e HTTP/1.1\\" 200 None\\nrequests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\\nrequests.packages.urllib3.connectionpool: DEBUG: \\"GET /api/jobs/fa6d20d0fb68383f?key=73391df1185a0911acd55c3f7fae680e HTTP/1.1\\" 200 None\\nrequests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\\nrequests.packages.urllib3.connectionpool: DEBUG: \\"GET /api/histories/5729865256bc2525/contents/fa6d20d0fb68383f/display?raw=true&key=73391df1185a0911acd55c3f7fae680e HTTP/1.1\\" 200 None\\nbase.twilltestcase: DEBUG: keepoutdir: /var/folders/2z/ntdb9g2n7tq6_bcq4dj9hj9r0000gn/T/tmp69oNhW/jobfiles, ofn: /var/folders/2z/ntdb9g2n7tq6_bcq4dj9hj9r0000gn/T/tmp69oNhW/jobfiles/samtools_stats_out2.tab\\nbase.twilltestcase: DEBUG: ## GALAXY_TEST_SAVE=/var/folders/2z/ntdb9g2n7tq6_bcq4dj9hj9r0000gn/T/tmp69oNhW/jobfiles. saved /var/folders/2z/ntdb9g2n7tq6_bcq4dj9hj9r0000gn/T/tmp69oNhW/jobfiles/samtools_stats_out2.tab\\nbase.twilltestcase: INFO: ## files diff on /Users/marten/devel/git/tools-devteam/tool_collections/samtools/samtools_stats/test-data/samtools_stats_out2.tab and /var/folders/2z/ntdb9g2n7tq6_bcq4dj9hj9r0000gn/T/tmp69oNhW/tmp/tmpYr1M8Csamtools_stats_out2.tab lines_diff=2, found diff = 4\\n--------------------- >> end captured logging << ---------------------\\n", "problem_type": "functional.test_toolbox.JobOutputsError"}, "id": "functional.test_toolbox.TestForTool_samtools_stats.test_tool_000001", "has_data": true}], "version": "0.1", "summary": {"num_skips": 0, "num_errors": 0, "num_failures": 2, "num_tests": 2}};\n- renderTestResults(test_data);\n- }\n- </script>\n- </body>\n-</html>\n' |
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| diff -r 0d71d9467847 -r 8cfc17e27132 tool_dependencies.xml --- a/tool_dependencies.xml Wed Apr 22 10:29:35 2015 -0400 +++ b/tool_dependencies.xml Wed Nov 11 12:55:15 2015 -0500 |
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| @@ -1,6 +1,6 @@ <?xml version="1.0"?> <tool_dependency> <package name="samtools" version="1.2"> - <repository changeset_revision="6eea04363026" name="package_samtools_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="f6ae3ba3f3c1" name="package_samtools_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> </tool_dependency> |