| Previous changeset 10:1ca4ce7241fd (2021-04-22) Next changeset 12:0e9e7fcdd543 (2021-09-17) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 69eb0054f76057436094943f262a74c982d8de42" |
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modified:
macros.xml medaka_consensus.xml |
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| diff -r 1ca4ce7241fd -r 8dfe8a52346f macros.xml --- a/macros.xml Thu Apr 22 20:25:13 2021 +0000 +++ b/macros.xml Sun Sep 12 20:35:45 2021 +0000 |
| [ |
| @@ -2,6 +2,11 @@ <macros> <token name="@TOOL_VERSION@">1.3.2</token> <token name="@PROFILE@">20.01</token> + <xml name="bio_tools"> + <xrefs> + <xref type="bio.tools">khmer</xref> + </xrefs> + </xml> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">medaka</requirement> @@ -109,4 +114,4 @@ <token name="@REFERENCES@"><![CDATA[ More information are available in the `manual <https://nanoporetech.github.io/medaka/index.html>`_ and `github <https://github.com/nanoporetech/medaka>`_. ]]></token> -</macros> \ No newline at end of file +</macros> |
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| diff -r 1ca4ce7241fd -r 8dfe8a52346f medaka_consensus.xml --- a/medaka_consensus.xml Thu Apr 22 20:25:13 2021 +0000 +++ b/medaka_consensus.xml Sun Sep 12 20:35:45 2021 +0000 |
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| @@ -6,6 +6,7 @@ <expand macro="requirements"/> <expand macro="version_command"/> <command detect_errors="exit_code"><![CDATA[ +ln -s '$d' 'input_assembly.fa' && medaka_consensus ## optional -m ${m} @@ -14,7 +15,7 @@ -t \${GALAXY_SLOTS:-4} ## required -i '$i' --d '$d' +-d 'input_assembly.fa' 2>&1 | tee '$out_log' ]]></command> |