| Previous changeset 3:d1912018a603 (2022-02-03) Next changeset 5:ee407fae3ccd (2023-05-30) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit aca07f4e7d683d1b7d06abb63e05d4ff1b28771f |
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modified:
callvariants.xml macros.xml |
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added:
test-data/SRX7529235_SRR10859038_1.fastq.gz test-data/SRX7529235_SRR10859038_2.fastq.gz test-data/bbmerge/input_R1.fastq test-data/bbmerge/input_R2.fastq test-data/bbmerge/input_interleaved.fastq test-data/bbmerge/insert_length_hist.tabular test-data/bbmerge/merged.fastq test-data/bbmerge/unmerged.fastq |
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| diff -r d1912018a603 -r 8eace8923202 callvariants.xml --- a/callvariants.xml Thu Feb 03 21:13:00 2022 +0000 +++ b/callvariants.xml Mon Feb 06 18:06:31 2023 +0000 |
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| @@ -1,4 +1,4 @@ -<tool id="bbtools_callvariants" name="BBTools: call variants" version="@WRAPPER_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> +<tool id="bbtools_callvariants" name="BBTools: call variants" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> <description>in aligned Bam files</description> <macros> <import>macros.xml</import> |
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| diff -r d1912018a603 -r 8eace8923202 macros.xml --- a/macros.xml Thu Feb 03 21:13:00 2022 +0000 +++ b/macros.xml Mon Feb 06 18:06:31 2023 +0000 |
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| @@ -1,10 +1,21 @@ <macros> - <token name="@WRAPPER_VERSION@">1.0.0</token> - <token name="@VERSION_SUFFIX@">3</token> - <token name="@PROFILE@">20.09</token> + <token name="@TOOL_VERSION@">39.01</token> + <token name="@VERSION_SUFFIX@">0</token> + <token name="@PROFILE@">22.01</token> + <xml name="edam_ontology"> + <edam_topics> + <edam_topic>topic_0622</edam_topic> <!-- Genomics --> + <edam_topic>topic_0091</edam_topic> <!-- Bioinformatics --> + </edam_topics> + <edam_operations> + <edam_operation>operation_0496</edam_operation> <!-- Global alignment --> + <edam_operation>operation_0491</edam_operation> <!-- Pairwise sequence alignment --> + </edam_operations> + </xml> <xml name="requirements"> <requirements> - <requirement type="package" version="38.93">bbmap</requirement> + <requirement type="package" version="@TOOL_VERSION@">bbmap</requirement> + <requirement type="package" version="1.16.1">samtools</requirement> <!-- automatic solving installs 1.6 in some cases, instead --> </requirements> </xml> <macro name="dbKeyActionsBBMap"> |
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| diff -r d1912018a603 -r 8eace8923202 test-data/SRX7529235_SRR10859038_1.fastq.gz |
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| Binary file test-data/SRX7529235_SRR10859038_1.fastq.gz has changed |
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| diff -r d1912018a603 -r 8eace8923202 test-data/SRX7529235_SRR10859038_2.fastq.gz |
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| Binary file test-data/SRX7529235_SRR10859038_2.fastq.gz has changed |
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| diff -r d1912018a603 -r 8eace8923202 test-data/bbmerge/input_R1.fastq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/bbmerge/input_R1.fastq Mon Feb 06 18:06:31 2023 +0000 |
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| @@ -0,0 +1,40 @@ +@A00604:500:HKMVNDSX3:2:1101:8196:1000 1:N:0:ATCGTCTC+NTAACCGA +NATCTCATTCCTTGAAAGTATTTCGATTTCTTGGCTTTATATATCTTGTGGAAAGGACGAAACACCGTGGAATCGCAGCCGAACCTGTTTAAGAGCTATGCTGGAAACAGCATAGCAAGTTTAAATAAGGCTAGTCCGTTATCAACTTGAA ++ +#FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFF:FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF +@A00604:500:HKMVNDSX3:2:1101:20419:1000 1:N:0:ATCGTCTC+NTAACCGA +GATCTCATTCCTTGAAAGTATTTCGATTTCTTGGCTTTATATATCTTGTGGAAAGGACGAAACACCGCCGGGCGACGATCATGAGCGTTTAAGAGCTATGCTGGAAACAGCATAGCAAGTTTAAATAAGGCTAGTCCGTTATCAACTTGAA ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFF,,,F:FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FF:FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFF:FFFFFFFFFFFFFFFFFFFFFFFFFF +@A00604:500:HKMVNDSX3:2:1101:20853:1000 1:N:0:ATCGTCTC+NTAACCGA +GATCTCATTCCTTGAAAGTATTTCGATTTCTTGGCTTTATATATCTTGTGGAAAGGACGAAACACCGGCCGCGGACATCTCGGTGGGTTTAAGAGCTATGCTGGAAACAGCATAGCAAGTTTAAATAAGGCTAGTCCGTTATCAACTTGAA ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFFFFFFF:FFF:FFFFFFFFFFFFFFFFFFFFF:FF,FFFFFFFFFFFFFFFFF:FFFFFF:FF:FFFFF +@A00604:500:HKMVNDSX3:2:1101:20943:1000 1:N:0:ATCGTCTC+NTAACCGA +GATCTCATTCCTTGAAAGTATTTCGATTTCTTGGTAAGTCATGGAGATTGTGTCTATATAAAAAGTGGTAGTGAAATCTGCATTATAAGATGACACTATCTCAAAGTGTATATCAATGAAGAGGATTGGTCATCCAGAAGTAGCACTGGAA ++ +FFFFFFFFFFFFFFFFFFFF:FFFFFF:FFF:FF:FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF +@A00604:500:HKMVNDSX3:2:1101:29460:1000 1:N:0:ATCGTCTC+NTAACCGA +GATCTCATTCCTTGAAAGTATTTCGATTTCTTGGCTTTATATATCTTGTGGAAAGGACGAAACACCGTCGATTCGGCCGCAGACGGGTTTAAGAGCTATGCTGGAAACAGCATAGCAAGTTTAAATAAGGCTAGTCCGTTATCAACTTGAA ++ +FFFFFFFFFFFFFFFFFFF:FFFFFFFFFFFFFFFF:FFFFFFFFFFFF:FF:FFFFFFFFFFFFFFFFFFFFFFFFFFF:FFF:FF,FFFFFFFFFFFFF:FFFFFFFFFF:FFFFFF:FFFFFFFF:FFFFFFFFF,FFFFFFFFFFFF +@A00604:500:HKMVNDSX3:2:1101:12979:1016 1:N:0:ATCGTCTC+NTAACCGA +ACTCGGTGCCACTTTTTCAAGTTGATAACGGACTAGCCTTATTTAAACTTGCTATGCTGTTTCCAGCATAGCTCTTAAACTGCGCACTGCAGGTGCCATCGGTGTTTCGTCCTTTCCACAAGATATATAAAGCCAAGAAATCGAAATACTT ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFFF:FFFFFFFFFFFFFFFF:FFFFFFFFFFFFFFFFFFFF +@A00604:500:HKMVNDSX3:2:1101:17517:1016 1:N:0:ATCGTCTC+NTAACCGA +ACTCGGTGCCACTTTTTCAAGTTGATAACGGACTAGCCTTATTTAAACTTGCTATGCTGTTTCCAGCATAGCTCTTAAACGATGAAACTATGGGACCCTCGGTGTTTCGTCCTTTCCACAAGATATATAAAGCCAAGAAATCGAAATACTT ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFF,FF:FFFFFFFFFFFF +@A00604:500:HKMVNDSX3:2:1101:25310:1016 1:N:0:ATCGTCTC+NTAACCGA +GATCTCATTCCTTGAAAGTATTTCGATTTCTTGGCTTTATATATCTTGTGGAAAGGACGAAACACCGCAAAGCCCCGGTAGGGCCGGTTTAAGAGCTATGCTGGAAACAGCATAGCAAGTTTAAATAAGGCTAGTCCGTTATCAACTTGAA ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFF:FFFFFFF:FFFFFF:FFFFFFF:FFFF:F:FF:FFFFF::FFFFFFFF::FFF:FFF:FFFFFFFFFFFFF +@A00604:500:HKMVNDSX3:2:1101:7346:1031 1:N:0:ATCGTCTC+GTAACCGA +ACTCGGTGCCACTTTTTCAAGTTGATAACGGACTAGCCTTATTTAAACTTGCTATGCTGTTTCCAGCATAGCTCTTAAACGGACTCGCCCACCTATGTCCGGTGTTTCGTCCTTTCCACAAGATATATAAAGCCAAGAAATCGAAATACTT ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FF:FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF,FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFFFFFF:FFFFFFFFFFFFFFF:FF +@A00604:500:HKMVNDSX3:2:1101:8919:1031 1:N:0:ATCGTCTC+GTAACCGA +GATCTCATTCTTGAAAGTATTTCGATTTCTTGGCTTTATATATCTTGTGGAAAGGACGAAACACCGCTCACCGGTTCTGCAGTAAGTTTAAGAGCTATGCTGGAAACAGCATAGCAAGTTTAAATAAGGCTAGTCCGTTATCAACTTGAAA ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF::FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFF:FFFFFFFFFFFFFFFFFFFFFFFFF:F |
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| diff -r d1912018a603 -r 8eace8923202 test-data/bbmerge/input_R2.fastq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/bbmerge/input_R2.fastq Mon Feb 06 18:06:31 2023 +0000 |
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| @@ -0,0 +1,40 @@ +@A00604:500:HKMVNDSX3:2:1101:8196:1000 2:N:0:ATCGTCTC+NTAACCGA +ACTCGGTGCCACTTTTTCAAGTTGATAACGGACTAGCCTTATTTAAACTTGCTATGCTGTTTCCAGCATAGCTCTTAAACAGGTTCGGCTGCGATTCCACGGTGTTTCGTCCTTTCCACAAGATATATAAAGCCAAGAAATCGAAATACTT ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFF +@A00604:500:HKMVNDSX3:2:1101:20419:1000 2:N:0:ATCGTCTC+NTAACCGA +ACTCGGTGCCACTTTTTCAAGTTGATAACGGACTAGCCTTATTTAAACTTGCTATGCTGTTTCCAGCATAGCTCTTAAACGCTCATGATCGTCGCCCGGCGGTGTTTCGTCCTTTCCACAAGATATATAAAGCCAAGAAATCGAAATACTT ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF +@A00604:500:HKMVNDSX3:2:1101:20853:1000 2:N:0:ATCGTCTC+NTAACCGA +ACTCGGTGCCACTTTTTCAAGTTGATAACGGACTAGCCTTATTTAAACTTGCTATGCTGTTTCCAGCATAGCTCTTAAACCCACCGAGATGTCCGCGGCCGGTGTTTCGTCCTTTCCACAAGATATATAAAGCCAAGAAATCGAAATACTT ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF,FFFFF,FFFFFFFFFFFFFFFFFFFFF +@A00604:500:HKMVNDSX3:2:1101:20943:1000 2:N:0:ATCGTCTC+NTAACCGA +ACTCGGTGCCACTTTTTCAACCAAGAGGGGCTAAAAATTTTCAAAGGTTACCTATATGATCAGATAAGTTCTGTTGGAAAGAAAATCAATTGATATGACATTGTCAGTCAACTGACATGGATTTTCTCATGACCTAACATGATATATTAAC ++ +FFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFFFFFFFF:FFFFFFFFFF:FFFFF:FFFFFFFFFFFFFFFFFFFFFFFFFF:FFFF:FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFFFFFF:FFFFFFFFFFFFFFFFFF +@A00604:500:HKMVNDSX3:2:1101:29460:1000 2:N:0:ATCGTCTC+NTAACCGA +ACTCGGTGCCACTTTTTCAAGTTGATAACGGACTAGCCTTATTTAAACTTGCTATGCTGTTTCCAGCATAGCTCTTAAACCCGTCTGCGGCCGAATCGACGGTGTTTCGTCCTTTCCACAAGATATATAAAGCCAAGAAATCGAAATACTT ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF,FFF:FFFFFFFFFFFFFFF:F:FFFFFFFF +@A00604:500:HKMVNDSX3:2:1101:12979:1016 2:N:0:ATCGTCTC+NTAACCGA +GATCTCATTCCTTGAAAGTATTTCGATTTCTTGGCTTTATATATCTTGTGGAAAGGACGAAACACCGATGGCACCTGCAGTGCGCAGTTTAAGAGCTATGCTGGAAACAGCATAGCAAGTTTAAATAAGGCTAGTCCGTTATCAACTTGAA ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF,FFFFFFFF:FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF +@A00604:500:HKMVNDSX3:2:1101:17517:1016 2:N:0:ATCGTCTC+NTAACCGA +GATCTCATTCCTTGAAAGTATTTCGATTTCTTGGCTTTATATATCTTGTGGAAAGGACGAAACACCGAGGGTCCCATAGTTTCATCGTTTAAGAGCTATGCTGGAAACAGCATAGCAAGTTTAAATAAGGCTAGTCCGTTATCAACTTGAA ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:,FFFF:FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF::FF:FF:FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFFFFFFFFFF:FFFFFFFFFFFFFFFFFFFFF +@A00604:500:HKMVNDSX3:2:1101:25310:1016 2:N:0:ATCGTCTC+NTAACCGA +ACTCGGTGCCACTTTTTCAAGTTGATAACGGACTAGCCTTATTTAAACTTGCTATGCTGTTTCCAGCATAGCTCTTAAACCGGCCCTACCGGGGCTTTGCGGTGTTTCGTCCTTTCCACAAGATATATAAAGCCAAGAAATCGAAATACTT ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFFF +@A00604:500:HKMVNDSX3:2:1101:7346:1031 2:N:0:ATCGTCTC+GTAACCGA +GATCTCATTCCTTGAAAGTATTTCGATTTCTTGGCTTTATATATCTTGTGGAAAGGACGAAACACCGGACATAGGTGGGCGAGTCCGTTTAAGAGCTATGCTGGAAACAGCATAGCAAGTTTAAATAAGGCTAGTCCGTTATCAACTTGAA ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF,FFFFFF:FFFFFFFF,FFFFFFFFFFFFFFFFFFFFFFF:FFFFFFFFFFF:FFFFFFFFFFFFFFFF:FFFFFF:FFF +@A00604:500:HKMVNDSX3:2:1101:8919:1031 2:N:0:ATCGTCTC+GTAACCGA +ACTCGGTGCCACTTTTTCAAGTTGATAACGGACTAGCCTTATTTAAACTTGCTATGCTGTTTCCAGCATAGCTCTTAAACTTACTGCAGAACCGGTGAGCGGTGTTTCGTCCTTTCCACAAGATATATAAAGCCAAGAAATCGAAATACTT ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFFF:FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FF,FFFFF |
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| diff -r d1912018a603 -r 8eace8923202 test-data/bbmerge/input_interleaved.fastq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/bbmerge/input_interleaved.fastq Mon Feb 06 18:06:31 2023 +0000 |
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| @@ -0,0 +1,80 @@ +@A00604:500:HKMVNDSX3:2:1101:8196:1000 1:N:0:ATCGTCTC+NTAACCGA +NATCTCATTCCTTGAAAGTATTTCGATTTCTTGGCTTTATATATCTTGTGGAAAGGACGAAACACCGTGGAATCGCAGCCGAACCTGTTTAAGAGCTATGCTGGAAACAGCATAGCAAGTTTAAATAAGGCTAGTCCGTTATCAACTTGAA ++ +#FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFF:FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF +@A00604:500:HKMVNDSX3:2:1101:8196:1000 2:N:0:ATCGTCTC+NTAACCGA +ACTCGGTGCCACTTTTTCAAGTTGATAACGGACTAGCCTTATTTAAACTTGCTATGCTGTTTCCAGCATAGCTCTTAAACAGGTTCGGCTGCGATTCCACGGTGTTTCGTCCTTTCCACAAGATATATAAAGCCAAGAAATCGAAATACTT ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFF +@A00604:500:HKMVNDSX3:2:1101:20419:1000 1:N:0:ATCGTCTC+NTAACCGA +GATCTCATTCCTTGAAAGTATTTCGATTTCTTGGCTTTATATATCTTGTGGAAAGGACGAAACACCGCCGGGCGACGATCATGAGCGTTTAAGAGCTATGCTGGAAACAGCATAGCAAGTTTAAATAAGGCTAGTCCGTTATCAACTTGAA ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFF,,,F:FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FF:FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFF:FFFFFFFFFFFFFFFFFFFFFFFFFF +@A00604:500:HKMVNDSX3:2:1101:20419:1000 2:N:0:ATCGTCTC+NTAACCGA +ACTCGGTGCCACTTTTTCAAGTTGATAACGGACTAGCCTTATTTAAACTTGCTATGCTGTTTCCAGCATAGCTCTTAAACGCTCATGATCGTCGCCCGGCGGTGTTTCGTCCTTTCCACAAGATATATAAAGCCAAGAAATCGAAATACTT ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF +@A00604:500:HKMVNDSX3:2:1101:20853:1000 1:N:0:ATCGTCTC+NTAACCGA +GATCTCATTCCTTGAAAGTATTTCGATTTCTTGGCTTTATATATCTTGTGGAAAGGACGAAACACCGGCCGCGGACATCTCGGTGGGTTTAAGAGCTATGCTGGAAACAGCATAGCAAGTTTAAATAAGGCTAGTCCGTTATCAACTTGAA ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFFFFFFF:FFF:FFFFFFFFFFFFFFFFFFFFF:FF,FFFFFFFFFFFFFFFFF:FFFFFF:FF:FFFFF +@A00604:500:HKMVNDSX3:2:1101:20853:1000 2:N:0:ATCGTCTC+NTAACCGA +ACTCGGTGCCACTTTTTCAAGTTGATAACGGACTAGCCTTATTTAAACTTGCTATGCTGTTTCCAGCATAGCTCTTAAACCCACCGAGATGTCCGCGGCCGGTGTTTCGTCCTTTCCACAAGATATATAAAGCCAAGAAATCGAAATACTT ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF,FFFFF,FFFFFFFFFFFFFFFFFFFFF +@A00604:500:HKMVNDSX3:2:1101:20943:1000 1:N:0:ATCGTCTC+NTAACCGA +GATCTCATTCCTTGAAAGTATTTCGATTTCTTGGTAAGTCATGGAGATTGTGTCTATATAAAAAGTGGTAGTGAAATCTGCATTATAAGATGACACTATCTCAAAGTGTATATCAATGAAGAGGATTGGTCATCCAGAAGTAGCACTGGAA ++ +FFFFFFFFFFFFFFFFFFFF:FFFFFF:FFF:FF:FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF +@A00604:500:HKMVNDSX3:2:1101:20943:1000 2:N:0:ATCGTCTC+NTAACCGA +ACTCGGTGCCACTTTTTCAACCAAGAGGGGCTAAAAATTTTCAAAGGTTACCTATATGATCAGATAAGTTCTGTTGGAAAGAAAATCAATTGATATGACATTGTCAGTCAACTGACATGGATTTTCTCATGACCTAACATGATATATTAAC ++ +FFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFFFFFFFF:FFFFFFFFFF:FFFFF:FFFFFFFFFFFFFFFFFFFFFFFFFF:FFFF:FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFFFFFF:FFFFFFFFFFFFFFFFFF +@A00604:500:HKMVNDSX3:2:1101:29460:1000 1:N:0:ATCGTCTC+NTAACCGA +GATCTCATTCCTTGAAAGTATTTCGATTTCTTGGCTTTATATATCTTGTGGAAAGGACGAAACACCGTCGATTCGGCCGCAGACGGGTTTAAGAGCTATGCTGGAAACAGCATAGCAAGTTTAAATAAGGCTAGTCCGTTATCAACTTGAA ++ +FFFFFFFFFFFFFFFFFFF:FFFFFFFFFFFFFFFF:FFFFFFFFFFFF:FF:FFFFFFFFFFFFFFFFFFFFFFFFFFF:FFF:FF,FFFFFFFFFFFFF:FFFFFFFFFF:FFFFFF:FFFFFFFF:FFFFFFFFF,FFFFFFFFFFFF +@A00604:500:HKMVNDSX3:2:1101:29460:1000 2:N:0:ATCGTCTC+NTAACCGA +ACTCGGTGCCACTTTTTCAAGTTGATAACGGACTAGCCTTATTTAAACTTGCTATGCTGTTTCCAGCATAGCTCTTAAACCCGTCTGCGGCCGAATCGACGGTGTTTCGTCCTTTCCACAAGATATATAAAGCCAAGAAATCGAAATACTT ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF,FFF:FFFFFFFFFFFFFFF:F:FFFFFFFF +@A00604:500:HKMVNDSX3:2:1101:12979:1016 1:N:0:ATCGTCTC+NTAACCGA +ACTCGGTGCCACTTTTTCAAGTTGATAACGGACTAGCCTTATTTAAACTTGCTATGCTGTTTCCAGCATAGCTCTTAAACTGCGCACTGCAGGTGCCATCGGTGTTTCGTCCTTTCCACAAGATATATAAAGCCAAGAAATCGAAATACTT ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFFF:FFFFFFFFFFFFFFFF:FFFFFFFFFFFFFFFFFFFF +@A00604:500:HKMVNDSX3:2:1101:12979:1016 2:N:0:ATCGTCTC+NTAACCGA +GATCTCATTCCTTGAAAGTATTTCGATTTCTTGGCTTTATATATCTTGTGGAAAGGACGAAACACCGATGGCACCTGCAGTGCGCAGTTTAAGAGCTATGCTGGAAACAGCATAGCAAGTTTAAATAAGGCTAGTCCGTTATCAACTTGAA ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF,FFFFFFFF:FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF +@A00604:500:HKMVNDSX3:2:1101:17517:1016 1:N:0:ATCGTCTC+NTAACCGA +ACTCGGTGCCACTTTTTCAAGTTGATAACGGACTAGCCTTATTTAAACTTGCTATGCTGTTTCCAGCATAGCTCTTAAACGATGAAACTATGGGACCCTCGGTGTTTCGTCCTTTCCACAAGATATATAAAGCCAAGAAATCGAAATACTT ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFF,FF:FFFFFFFFFFFF +@A00604:500:HKMVNDSX3:2:1101:17517:1016 2:N:0:ATCGTCTC+NTAACCGA +GATCTCATTCCTTGAAAGTATTTCGATTTCTTGGCTTTATATATCTTGTGGAAAGGACGAAACACCGAGGGTCCCATAGTTTCATCGTTTAAGAGCTATGCTGGAAACAGCATAGCAAGTTTAAATAAGGCTAGTCCGTTATCAACTTGAA ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:,FFFF:FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF::FF:FF:FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFFFFFFFFFF:FFFFFFFFFFFFFFFFFFFFF +@A00604:500:HKMVNDSX3:2:1101:25310:1016 1:N:0:ATCGTCTC+NTAACCGA +GATCTCATTCCTTGAAAGTATTTCGATTTCTTGGCTTTATATATCTTGTGGAAAGGACGAAACACCGCAAAGCCCCGGTAGGGCCGGTTTAAGAGCTATGCTGGAAACAGCATAGCAAGTTTAAATAAGGCTAGTCCGTTATCAACTTGAA ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFF:FFFFFFF:FFFFFF:FFFFFFF:FFFF:F:FF:FFFFF::FFFFFFFF::FFF:FFF:FFFFFFFFFFFFF +@A00604:500:HKMVNDSX3:2:1101:25310:1016 2:N:0:ATCGTCTC+NTAACCGA +ACTCGGTGCCACTTTTTCAAGTTGATAACGGACTAGCCTTATTTAAACTTGCTATGCTGTTTCCAGCATAGCTCTTAAACCGGCCCTACCGGGGCTTTGCGGTGTTTCGTCCTTTCCACAAGATATATAAAGCCAAGAAATCGAAATACTT ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFFF +@A00604:500:HKMVNDSX3:2:1101:7346:1031 1:N:0:ATCGTCTC+GTAACCGA +ACTCGGTGCCACTTTTTCAAGTTGATAACGGACTAGCCTTATTTAAACTTGCTATGCTGTTTCCAGCATAGCTCTTAAACGGACTCGCCCACCTATGTCCGGTGTTTCGTCCTTTCCACAAGATATATAAAGCCAAGAAATCGAAATACTT ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FF:FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF,FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFFFFFF:FFFFFFFFFFFFFFF:FF +@A00604:500:HKMVNDSX3:2:1101:7346:1031 2:N:0:ATCGTCTC+GTAACCGA +GATCTCATTCCTTGAAAGTATTTCGATTTCTTGGCTTTATATATCTTGTGGAAAGGACGAAACACCGGACATAGGTGGGCGAGTCCGTTTAAGAGCTATGCTGGAAACAGCATAGCAAGTTTAAATAAGGCTAGTCCGTTATCAACTTGAA ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF,FFFFFF:FFFFFFFF,FFFFFFFFFFFFFFFFFFFFFFF:FFFFFFFFFFF:FFFFFFFFFFFFFFFF:FFFFFF:FFF +@A00604:500:HKMVNDSX3:2:1101:8919:1031 1:N:0:ATCGTCTC+GTAACCGA +GATCTCATTCTTGAAAGTATTTCGATTTCTTGGCTTTATATATCTTGTGGAAAGGACGAAACACCGCTCACCGGTTCTGCAGTAAGTTTAAGAGCTATGCTGGAAACAGCATAGCAAGTTTAAATAAGGCTAGTCCGTTATCAACTTGAAA ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF::FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFF:FFFFFFFFFFFFFFFFFFFFFFFFF:F +@A00604:500:HKMVNDSX3:2:1101:8919:1031 2:N:0:ATCGTCTC+GTAACCGA +ACTCGGTGCCACTTTTTCAAGTTGATAACGGACTAGCCTTATTTAAACTTGCTATGCTGTTTCCAGCATAGCTCTTAAACTTACTGCAGAACCGGTGAGCGGTGTTTCGTCCTTTCCACAAGATATATAAAGCCAAGAAATCGAAATACTT ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFFF:FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FF,FFFFF |
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| diff -r d1912018a603 -r 8eace8923202 test-data/bbmerge/insert_length_hist.tabular --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/bbmerge/insert_length_hist.tabular Mon Feb 06 18:06:31 2023 +0000 |
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| @@ -0,0 +1,8 @@ +#Mean 165.889 +#Median 166 +#Mode 166 +#STDev 0.314 +#PercentOfPairs 90.000 +#InsertSize Count +165 1 +166 8 |
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| diff -r d1912018a603 -r 8eace8923202 test-data/bbmerge/merged.fastq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/bbmerge/merged.fastq Mon Feb 06 18:06:31 2023 +0000 |
| b |
| @@ -0,0 +1,36 @@ +@A00604:500:HKMVNDSX3:2:1101:8196:1000 1:N:0:ATCGTCTC+NTAACCGA +NATCTCATTCCTTGAAAGTATTTCGATTTCTTGGCTTTATATATCTTGTGGAAAGGACGAAACACCGTGGAATCGCAGCCGAACCTGTTTAAGAGCTATGCTGGAAACAGCATAGCAAGTTTAAATAAGGCTAGTCCGTTATCAACTTGAAAAAGTGGCACCGAGT ++ +!FFFFFFFFFFFFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFFFFFFFFFFFFF +@A00604:500:HKMVNDSX3:2:1101:20419:1000 1:N:0:ATCGTCTC+NTAACCGA +GATCTCATTCCTTGAAAGTATTTCGATTTCTTGGCTTTATATATCTTGTGGAAAGGACGAAACACCGCCGGGCGACGATCATGAGCGTTTAAGAGCTATGCTGGAAACAGCATAGCAAGTTTAAATAAGGCTAGTCCGTTATCAACTTGAAAAAGTGGCACCGAGT ++ +FFFFFFFFFFFFFFFJJJJJJJJJJJJJJJJJJJJHHHJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFFFFFFFFFFFFF +@A00604:500:HKMVNDSX3:2:1101:20853:1000 1:N:0:ATCGTCTC+NTAACCGA +GATCTCATTCCTTGAAAGTATTTCGATTTCTTGGCTTTATATATCTTGTGGAAAGGACGAAACACCGGCCGCGGACATCTCGGTGGGTTTAAGAGCTATGCTGGAAACAGCATAGCAAGTTTAAATAAGGCTAGTCCGTTATCAACTTGAAAAAGTGGCACCGAGT ++ +FFFFFFFFFFFFFFFJJJJJJJJJJJJJJJJJJJJJHJJJJJHJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJHJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFFFFFFFFFFFFF +@A00604:500:HKMVNDSX3:2:1101:29460:1000 1:N:0:ATCGTCTC+NTAACCGA +GATCTCATTCCTTGAAAGTATTTCGATTTCTTGGCTTTATATATCTTGTGGAAAGGACGAAACACCGTCGATTCGGCCGCAGACGGGTTTAAGAGCTATGCTGGAAACAGCATAGCAAGTTTAAATAAGGCTAGTCCGTTATCAACTTGAAAAAGTGGCACCGAGT ++ +FFFFFFFFFFFFFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJHJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJHJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJHJJJJJJJJJJJJFFFFFFFFFFFFFFF +@A00604:500:HKMVNDSX3:2:1101:12979:1016 1:N:0:ATCGTCTC+NTAACCGA +ACTCGGTGCCACTTTTTCAAGTTGATAACGGACTAGCCTTATTTAAACTTGCTATGCTGTTTCCAGCATAGCTCTTAAACTGCGCACTGCAGGTGCCATCGGTGTTTCGTCCTTTCCACAAGATATATAAAGCCAAGAAATCGAAATACTTTCAAGGAATGAGATC ++ +FFFFFFFFFFFFFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJHJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFFFFFFFFFFFFF +@A00604:500:HKMVNDSX3:2:1101:17517:1016 1:N:0:ATCGTCTC+NTAACCGA +ACTCGGTGCCACTTTTTCAAGTTGATAACGGACTAGCCTTATTTAAACTTGCTATGCTGTTTCCAGCATAGCTCTTAAACGATGAAACTATGGGACCCTCGGTGTTTCGTCCTTTCCACAAGATATATAAAGCCAAGAAATCGAAATACTTTCAAGGAATGAGATC ++ +FFFFFFFFFFFFFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJH<JJJJJJJJJJJJJJJFFFFFFFFFFFFFFF +@A00604:500:HKMVNDSX3:2:1101:25310:1016 1:N:0:ATCGTCTC+NTAACCGA +GATCTCATTCCTTGAAAGTATTTCGATTTCTTGGCTTTATATATCTTGTGGAAAGGACGAAACACCGCAAAGCCCCGGTAGGGCCGGTTTAAGAGCTATGCTGGAAACAGCATAGCAAGTTTAAATAAGGCTAGTCCGTTATCAACTTGAAAAAGTGGCACCGAGT ++ +FFFFFFFFFFFFFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFFFFFFFFFFFFF +@A00604:500:HKMVNDSX3:2:1101:7346:1031 1:N:0:ATCGTCTC+GTAACCGA +ACTCGGTGCCACTTTTTCAAGTTGATAACGGACTAGCCTTATTTAAACTTGCTATGCTGTTTCCAGCATAGCTCTTAAACGGACTCGCCCACCTATGTCCGGTGTTTCGTCCTTTCCACAAGATATATAAAGCCAAGAAATCGAAATACTTTCAAGGAATGAGATC ++ +FFFFFFFFFFFFFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJHJJJJJJJHJJJJJJJHJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFFFFFFFFFFFFF +@A00604:500:HKMVNDSX3:2:1101:8919:1031 1:N:0:ATCGTCTC+GTAACCGA +GATCTCATTCTTGAAAGTATTTCGATTTCTTGGCTTTATATATCTTGTGGAAAGGACGAAACACCGCTCACCGGTTCTGCAGTAAGTTTAAGAGCTATGCTGGAAACAGCATAGCAAGTTTAAATAAGGCTAGTCCGTTATCAACTTGAAAAAGTGGCACCGAGT ++ +FFFFFFFFFFFFFFJJJJJHJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFFFFFFFFFFFF |
| b |
| diff -r d1912018a603 -r 8eace8923202 test-data/bbmerge/unmerged.fastq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/bbmerge/unmerged.fastq Mon Feb 06 18:06:31 2023 +0000 |
| b |
| @@ -0,0 +1,8 @@ +@A00604:500:HKMVNDSX3:2:1101:20943:1000 1:N:0:ATCGTCTC+NTAACCGA +GATCTCATTCCTTGAAAGTATTTCGATTTCTTGGTAAGTCATGGAGATTGTGTCTATATAAAAAGTGGTAGTGAAATCTGCATTATAAGATGACACTATCTCAAAGTGTATATCAATGAAGAGGATTGGTCATCCAGAAGTAGCACTGGAA ++ +FFFFFFFFFFFFFFFFFFFF:FFFFFF:FFF:FF:FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF +@A00604:500:HKMVNDSX3:2:1101:20943:1000 2:N:0:ATCGTCTC+NTAACCGA +ACTCGGTGCCACTTTTTCAACCAAGAGGGGCTAAAAATTTTCAAAGGTTACCTATATGATCAGATAAGTTCTGTTGGAAAGAAAATCAATTGATATGACATTGTCAGTCAACTGACATGGATTTTCTCATGACCTAACATGATATATTAAC ++ +FFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFFFFFFFF:FFFFFFFFFF:FFFFF:FFFFFFFFFFFFFFFFFFFFFFFFFF:FFFF:FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFFFFFF:FFFFFFFFFFFFFFFFFF |