| Previous changeset 5:9b2072ee4bdd (2019-11-20) Next changeset 7:9c65f1de489b (2019-11-25) |
|
Commit message:
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 0a162684a5859a53eefb14af11ba8ec64d42b213-dirty |
|
modified:
scanpy-filter-cells.xml |
| b |
| diff -r 9b2072ee4bdd -r 9024cf7a9a13 scanpy-filter-cells.xml --- a/scanpy-filter-cells.xml Wed Nov 20 05:50:53 2019 -0500 +++ b/scanpy-filter-cells.xml Wed Nov 20 06:36:04 2019 -0500 |
| [ |
| @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="utf-8"?> -<tool id="scanpy_filter_cells" name="Scanpy FilterCells" version="@TOOL_VERSION@+galaxy2"> +<tool id="scanpy_filter_cells" name="Scanpy FilterCells" version="@TOOL_VERSION@+galaxy3"> <description>based on counts and numbers of genes expressed</description> <macros> <import>scanpy_macros2.xml</import> @@ -12,15 +12,15 @@ --gene-name '${gene_name}' #end if #if $parameters - #set pars = ' '.join(['--param c:{name} {min} {max}'.format(**$p) for $p in $parameters]) + #set pars = ' '.join(["--param 'c:{name}' {min} {max}".format(**$p) for $p in $parameters]) ${pars} #end if #if $categories - #set cats = ' '.join(["--category c:{name} '{negate}{values}'".format(**$c) for $c in $categories]) + #set cats = ' '.join(["--category 'c:{name}' '{negate}{values}'".format(**$c) for $c in $categories]) ${cats} #end if #if $subsets - #set subs = ' '.join(['--subset c:{name} {subset}'.format(**$s) for $s in $subsets]) + #set subs = ' '.join(["--subset 'c:{name}' '{subset}'".format(**$s) for $s in $subsets]) ${subs} #end if @INPUT_OPTS@ |