Repository 'rgreat'
hg clone https://toolshed.g2.bx.psu.edu/repos/jobucher/rgreat

Changeset 12:903be3cf2a29 (2024-11-26)
Previous changeset 11:c3284ce6eae1 (2024-11-20) Next changeset 13:29cae736023c (2024-11-26)
Commit message:
planemo upload for repository https://github.com/jonasbucherETH/galaxy/blob/dev/tools/my_tools/rgreat/.shed.yml commit e342d1bd88b0a44be55354ce6e3cdec825769d10
modified:
rgreat.xml
b
diff -r c3284ce6eae1 -r 903be3cf2a29 rgreat.xml
--- a/rgreat.xml Wed Nov 20 09:32:32 2024 +0000
+++ b/rgreat.xml Tue Nov 26 08:53:58 2024 +0000
b
@@ -9,6 +9,7 @@
         <requirement type="package" version="1.15.4">r-data.table</requirement>
         <requirement type="package" version="2.4.0">bioconductor-rgreat</requirement>
         <requirement type="package" version="1.42.0">bioconductor-keggrest</requirement>
+        <requirement type="package" version="2.58.0">bioconductor-biomart</requirement>
         <requirement type="package" version="1.0.7">r-biomartr</requirement>
         <requirement type="package" version="0.99.11">bioconductor-biomartgogenesets</requirement>
         <requirement type="package" version="1.54.1">bioconductor-genomicranges</requirement>
@@ -111,8 +112,8 @@
         </conditional>
     </inputs>
     <outputs>
-        <data name="output_hypo" format="rds" label="Output hypo-methyla: ${cytosine_context} context" />
-        <data name="output_hyper" format="rds" label="Output hyper: ${cytosine_context} context" />
+        <data name="output_hypo" format="rds, rdata" label="Output hypo-methyla: ${cytosine_context} context" />
+        <data name="output_hyper" format="rds, rdata" label="Output hyper: ${cytosine_context} context" />
     </outputs>
     <tests>
         <test>