| Previous changeset 4:fdc58a0cc1d4 (2018-11-20) Next changeset 6:ff313de5f7f4 (2019-10-17) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_view commit ca0d1d44099fd21e0f8214102f4d8a2fd2d054d6 |
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removed:
test-data/cached_locally/chr_m.fasta test-data/cached_locally/chr_m.fasta.fai test-data/cached_locally/fasta_indexes.loc |
| b |
| diff -r fdc58a0cc1d4 -r 90944a49ad05 test-data/cached_locally/chr_m.fasta --- a/test-data/cached_locally/chr_m.fasta Tue Nov 20 06:21:33 2018 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b'@@ -1,335 +0,0 @@\n->chrM\n-GTTAATGTAGCTTAATAATATAAAGCAAGGCACTGAAAATGCCTAGATGA\n-GTATTCTTACTCCATAAACACATAGGCTTGGTCCTAGCCTTTTTATTAGT\n-TATTAATAGAATTACACATGCAAGTATCCGCACCCCAGTGAGAATGCCCT\n-CTAAATCACGTCTCTACGATTAAAAGGAGCAGGTATCAAGCACACTAGAA\n-AGTAGCTCATAACACCTTGCTCAGCCACACCCCCACGGGACACAGCAGTG\n-ATAAAAATTAAGCTATGAACGAAAGTTCGACTAAGTCATATTAAATAAGG\n-GTTGGTAAATTTCGTGCCAGCCACCGCGGTCATACGATTAACCCAAATTA\n-ATAAATCTCCGGCGTAAAGCGTGTCAAAGACTAATACCAAAATAAAGTTA\n-AAACCCAGTTAAGCCGTAAAAAGCTACAACCAAAGTAAAATAGACTACGA\n-AAGTGACTTTAATACCTCTGACTACACGATAGCTAAGACCCAAACTGGGA\n-TTAGATACCCCACTATGCTTAGCCCTAAACTAAAATAGCTTACCACAACA\n-AAGCTATTCGCCAGAGTACTACTAGCAACAGCCTAAAACTCAAAGGACTT\n-GGCGGTGCTTTACATCCCTCTAGAGGAGCCTGTTCCATAATCGATAAACC\n-CCGATAAACCCCACCATCCCTTGCTAATTCAGCCTATATACCGCCATCTT\n-CAGCAAACCCTAAACAAGGTACCGAAGTAAGCACAAATATCCAACATAAA\n-AACGTTAGGTCAAGGTGTAGCCCATGGGATGGAGAGAAATGGGCTACATT\n-TTCTACCCTAAGAACAAGAACTTTAACCCGGACGAAAGTCTCCATGAAAC\n-TGGAGACTAAAGGAGGATTTAGCAGTAAATTAAGAATAGAGAGCTTAATT\n-GAATCAGGCCATGAAGCGCGCACACACCGCCCGTCACCCTCCTTAAATAT\n-CACAAATCATAACATAACATAAAACCGTGACCCAAACATATGAAAGGAGA\n-CAAGTCGTAACAAGGTAAGTATACCGGAAGGTGTACTTGGATAACCAAAG\n-TGTAGCTTAAACAAAGCATCCAGCTTACACCTAGAAGATTTCACTCAAAA\n-TGAACACTTTGAACTAAAGCTAGCCCAAACAATACCTAATTCAATTACCC\n-TTAGTCACTTAACTAAAACATTCACCAAACCATTAAAGTATAGGAGATAG\n-AAATTTTAACTTGGCGCTATAGAGAAAGTACCGTAAGGGAACGATGAAAG\n-ATGCATTAAAAGTACTAAACAGCAAAGCTTACCCCTTTTACCTTTTGCAT\n-AATGATTTAACTAGAATAAACTTAGCAAAGAGAACTTAAGCTAAGCACCC\n-CGAAACCAGACGAGCTACCTATGAACAGTTACAAATGAACCAACTCATCT\n-ATGTCGCAAAATAGTGAGAAGATTCGTAGGTAGAGGTGAAAAGCCCAACG\n-AGCCTGGTGATAGCTGGTTGTCCAGAAACAGAATTTCAGTTCAAATTTAA\n-ATTTACCTAAAAACTACTCAATTCTAATGTAAATTTAAATTATAGTCTAA\n-AAAGGTACAGCTTTTTAGATACAGGTTACAACCTTCATTAGAGAGTAAGA\n-ACAAGATAAACCCATAGTTGGCTTAAAAGCAGCCATCAATTAAGAAAGCG\n-TTCAAGCTCAACGACACATCTATCTTAATCCCAACAATCAACCCAAACTA\n-ACTCCTAATCTCATACTGGACTATTCTATCAACACATAGAAGCAATAATG\n-TTAATATGAGTAACAAGAATTATTTCTCCTTGCATAAGCTTATATCAGAA\n-CGAATACTCACTGATAGTTAACAACAAGATAGGGATAATCCAAAAACTAA\n-TCATCTATTTAAACCATTGTTAACCCAACACAGGCATGCATCTATAAGGA\n-AAGATTAAAAGAAGTAAAAGGAACTCGGCAAACACAAACCCCGCCTGTTT\n-ACCAAAAACATCACCTCTAGCATTTCCAGTATTAGAGGCACTGCCTGCCC\n-AGTGACATCTGTTtaaacggccgcggtatcctaaccgtgcaaaggtagca\n-taatcacttgttccctaaatagggacttgtatgaatggccacacgagggt\n-tttactgtctcttacttccaatcagtgaaattgaccttcccgtgaagagg\n-cgggaatgactaaataagacgagaagaccctatggagcttTAATTAACTG\n-ATTCACAAAAAACAACACACAAACCTTAACCTTCAGGGACAACAAAACTT\n-TTGATTGAATCAGCAATTTCGGTTGGGGTGACCTCGGAGAACAAAACAAC\n-CTCCGAGTGATTTAAATCCAGACTAACCAGTCAAAATATATAATCACTTA\n-TTGATCCAAACCATTGATCAACGGAACAAGTTACCCTAGGGATAACAGCG\n-CAATCCTATTCCAGAGTCCATATCGACAATTAGGGTTTACGACCTCGATG\n-TTGGATCAAGACATCCTAATGGTGCAACCGCTATTAAGGGTTCGTTTGTT\n-CAACGATTAAAGTCTTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGT\n-CGGTTTCTATCTATTCTATACTTTTCCCAGTACGAAAGGACAAGAAAAGT\n-AGGGCCCACTTTACAAGAAGCGCCCTCAAACTAATAGATGACATAATCTA\n-AATCTAACTAATTTATAACTTCTACCGCCCTAGAACAGGGCTCgttaggg\n-tggcagagcccggaaattgcataaaacttaaacctttacactcagaggtt\n-caactcctctccctaacaacaTGTTCATAATTAACGTCCTCCTCCTAATT\n-GTCCCAATCTTGCTCGCCGTAGCATTCCTCACACTAGTTGAACGAAAAGT\n-CTTAGGCTATATGCAACTTCGCAAAGGACCCAACATCGTAGGCCCCTATG\n-GCCTACTACAACCTATTGCCGATGCCCTCAAACTATTTATCAAAGAGCCA\n-CTACAACCACTAACATCATCGACATCCATATTCATCATCGCACCAATCCT\n-AGCCCTAACCCTGGCCTTAACCATATGAATCCCTCTGCCCATACCATACC\n-CACTAATCAACATAAACCTAGGAATTCTATTCATACTAGCCATGTCCAGC\n-CTAGCTGTCTACTCAATCCTTTGATCAGGATGGGCCTCAAACTCAAAATA\n-CGCCCTAATTGGAGCTCTACGAGCAGTAGCACAAACCATCTCATACGAAG\n-TAACTCTAGCAATCATCCTACTCTCAGTCCTCCTAATAAGCGGATCATTC\n-ACATTATCAACACTTATTATTACCCAAGAATACCTCTGATTAATCTTCCC\n-ATCATGACCCTTAGCCATAATGTGATTCATCTCAACATTAGCCGAAACCA\n-ACCGAGCTCCATTTGACCTAACAGAAGGAGAATCAGAACTCGTCTCTGGA\n-TTCAACGTTGAATACGCAGCCGGCCCATTTGCTCTATTCTTCCTAGCAGA\n-ATACGCAAACATCATCATGATAAACATCTTCACAACAACCCTATTTCTAG\n-GAGCATTTCACAACCCCTACCTGCCAGAACTCTACTCAATTAATTTCACC\n-ATTAAAGCTCTCCTTCTAACATGTTCCTTCCTATGAATCCGAGCATCCTA\n-CCCACGATTCCGATATGACCAACTTATACACCTCCTATGAAAGAACTTCC\n-TACCACTCACACTAGCCCTCTGCATATGACACGTCTCACTTCCAATCATA\n-CTATCCAGCATCCCACCACAAACATAGGAAATATGTCTGACAAAAGAGTT\n-ACTTTGATAGAGTAAAACATAGAGGCTCAAACCCTCTTATTTctagaact\n-acaggaattgaacctgctcct'..b'CATTATCCACAGCCTAAATGACGAGCAAGATATC\n-CGAAAAATAGGCGGACTATTTAATGCAATACCCTTCACCACCACATCTCT\n-AATTATTGGCAGCCTTGCACTCACCGGAATTCCTTTCCTCACAGGCTTCT\n-ACTCCAAAGACCTCATCATCGAAACCGCCAACACATCGTACACCAACGCC\n-TGAGCCCTACTAATAACTCTCATTGCCACATCCCTCACAGCTGTCTACAG\n-TACCCGAATCATCTTCTTTGCACTCCTAGGGCAACCCCGCTTCCTCCCTC\n-TGACCTCAATCAACGAAAATAACCCCTTTCTAATTAACTCCATCAAACGC\n-CTCTTAATTGGCAGCATTTTTGCCGGATTCTTCATCTCCAACAATATCTA\n-CCCCACAACCGTCCCAGAAATAACCATACCTACTTACATAAAACTCACCG\n-CCCTCGCAGTAACCATCCTAGGATTTACACTAGCCCTAGAACTAAGCTTG\n-ATAACCCATAACTTAAAACTAGAACACTCCACCAACGTATTCAAATTCTC\n-CAACCTCCTAGGATACTACCCAACAATTATACACCGACTCCCACCGCTCG\n-CTAACCTATCAATAAGCCAAAAATCAGCATCACTTCTACTAGACTCAATC\n-TGACTAGAAAACATCCTGCCAAAATCTATCTCCCAGTTCCAAATAAAAAC\n-CTCGATCCTAATTTCCACCCAAAAAGGACAAATCAAATTATATTTCCTCT\n-CATTCCTCATCACCCTTACCCTAAGCATACTACTTTTTAATCTCCACGAG\n-TAACCTCTAAAATTACCAAGACCCCAACAAGCAACGATCAACCAGTCACA\n-ATCACAACCCAAGCCCCATAACTATACAATGCAGCAGCCCCTATAATTTC\n-CTCACTAAACGCCCCAGAATCTCCAGTATCATAAATAGCTCAAGCCCCCA\n-CACCACTAAACTTAAACACTACCCCCACTTCCTCACTCTTCAGAACATAT\n-AAAACCAACATAACCTCCATCAACAACCCTAAAAGAAATACCCCCATAAC\n-AGTCGTATTAGACACCCATACCTCAGGATACTGCTCAGTAGCCATAGCCG\n-TTGTATAACCAAAAACAACCAACATTCCTCCCAAATAAATCAAAAACACC\n-ATCAACCCCAAAAAGGACCCTCCAAAATTCATAATAATACCACAACCTAC\n-CCCTCCACTTACAATCAGCACTAAACCCCCATAAATAGGTGAAGGTTTTG\n-AAGAAAACCCCACAAAACTAACAACAAAAATAACACTCAAAATAAACACA\n-ATATATGTCATCATTATTCCCACGTGGAATCTAACCACGACCAATGACAT\n-GAAAAATCATCGTTGTATTTCAACTATAAGAACACCAATGACAAACATCC\n-GGAAATCTCACCCACTAATTAAAATCATCAATCACTCTTTTATTGACCTA\n-CCAGCCCCCTCAAACATTTCATCATGATGAAACTTCGGCTCCCTCCTAGG\n-AATCTGCCTAATCCTCCAAATCTTAACAGGCCTATTCCTAGCCATACACT\n-ACACATCAGACACGACAACTGCCTTCTCATCCGTCACTCACATCTGCCGA\n-GACGTTAACTACGGATGAATTATTCGCTACCTCCATGCCAACGGAGCATC\n-AATATTTTTTATCTGCCTCTTCATTCACGTAGGACGCGGCCTCTACTACG\n-GCTCTTACACATTCCTAGAGACATGAAACATTGGAATCATCCTACTTTTC\n-ACAGTTATAGCTACAGCATTCATGGGCTATGTCCTACCATGAGGCCAAAT\n-ATCCTTTTGAGGAGCAACAGTCATCACGAACCTCCTATCAGCAATTCCCT\n-ACATCGGTACTACCCTCGTCGAGTGAATCTGAGGTGGATTCTCAGTAGAC\n-AAAGCCACCCTTACCCGATTTTTTGCTTTCCACTTCATCCTACCCTTCAT\n-CATCACAGCCCTGGTAGTCGTACATTTACTATTTCTTCACGAAACAGGAT\n-CTAATAACCCCTCAGGAATCCCATCCGATATGGACAAAATCCCATTCCAC\n-CCATATTATACAATTAAAGACATCCTAGGACTCCTCCTCCTGATCTTGCT\n-CCTACTAACTCTAGTATTATTCTCCCCCGACCTCCTAGGAGACCCAGACA\n-ACTACACCCCAGCTAACCCTCTCAGCACTCCCCCTCATATTAAACCAGAA\n-TGGTACTTCCTGTTTGCCTACGCCATCCTACGCTCCATTCCCAACAAACT\n-AGGCGGCGTATTAGCCCTAATCCTCTCCATCCTGATCCTAGCACTCATCC\n-CCACCCTCCACATATCAAAACAACGAAGCATAATATTCCGGCCTCTCAGC\n-CAATGCGTATTCTGACTCTTAGTGGCAGACTTACTGACACTAACATGAAT\n-CGGCGGACAGCCAGTGGAACACCCATACGTAATTATCGGCCAACTGGCCT\n-CAATCCTCTACTTCTCCCTAATTCTCATTTTTATACCACTCGCAAGCACC\n-ATCGAAAACAATCTTCTAAAATGAAGAGTCCCTGTAGTATATCGCACATT\n-ACCCTGGTCTTGTAAACCAGAAAAGGGGGAAAACGTTTCCTCCCAAGGAC\n-TATCAAGGAAGAAGCTCTAGCTCCACCATCAACACCCAAAGCTGAAATTC\n-TACTTAAACTATTCCTTGATTTCTTCCCCTAAACGACAACAATTTACCCT\n-CATGTGCTATGTCAGTATCAGATTATACCCCCACATAACACCATACCCAC\n-CTGACATGCAATATCTTATGAATGGCCTATGTACGTCGTGCATTAAATTG\n-TCTGCCCCATGAATAATAAGCATGTACATAATATCATTTATCTTACATAA\n-GTACATTATATTATTGATCGTGCATACCCCATCCAAGTCAAATCATTTCC\n-AGTCAACACGCATATCACAGCCCATGTTCCACGAGCTTAATCACCAAGCC\n-GCGGGAAATCAGCAACCCTCCCAACTACGTGTCCCAATCCTCGCTCCGGG\n-CCCATCCAAACGTGGGGGTTTCTACAATGAAACTATACCTGGCATCTGGT\n-TCTTTCTTCAGGGCCATTCCCACCCAACCTCGCCCATTCTTTCCCCTTAA\n-ATAAGACATCTCGATGGACTAATGACTAATCAGCCCATGCTCACACATAA\n-CTGTGATTTCATGCATTTGGTATCTTTTTATATTTGGGGATGCTATGACT\n-CAGCTATGGCCGTCAAAGGCCTCGACGCAGTCAATTAAATTGAAGCTGGA\n-CTTAAATTGAACGTTATTCCTCCGCATCAGCAACCATAAGGTGTTATTCA\n-GTCCATGGTAGCGGGACATAGGAAACAAgtgcacctgtgcacctgtgcac\n-ctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacct\n-gtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgt\n-gcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgc\n-acctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcac\n-ctgtgcacctACCCGCGCAGTAAGCAAGTAATATAGCTTTCTTAATCAAA\n-CCCCCCCTACCCCCCATTAAACTCCACATATGTACATTCAACACAATCTT\n-GCCAAACCCCAAAAACAAGACTAAACAATGCACAATACTTCATGAAGCTT\n-AACCCTCGCATGCCAACCATAATAACTCAACACACCTAACAATCTTAACA\n-GAACTTTCCCCCCGCCATTAATACCAACATGCTACTTTAATCAATAAAAT\n-TTCCATAGACAGGCATCCCCCTAGATCTAATTTTCTAAATCTGTCAACCC\n-TTCTTCCCCC\n' |
| b |
| diff -r fdc58a0cc1d4 -r 90944a49ad05 test-data/cached_locally/chr_m.fasta.fai --- a/test-data/cached_locally/chr_m.fasta.fai Tue Nov 20 06:21:33 2018 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,1 +0,0 @@ -chrM 16660 6 50 51 |
| b |
| diff -r fdc58a0cc1d4 -r 90944a49ad05 test-data/cached_locally/fasta_indexes.loc --- a/test-data/cached_locally/fasta_indexes.loc Tue Nov 20 06:21:33 2018 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,1 +0,0 @@ -equCab2chrM equCab2 Horse (Equus caballus): equCab2 chrM ${__HERE__}/chr_m.fasta |