| Previous changeset 0:bfb20dbe1309 (2017-10-24) Next changeset 2:649b98adce77 (2018-03-06) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 649c01600172bcd42e740a0159cc91894d8e89ca |
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modified:
orthofinder_only_groups.xml |
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added:
test-data/inputs/no_fa_ext/AcAcaud_trinity test-data/inputs/no_fa_ext/AmAmphi_trinity test-data/inputs/no_fa_ext/ApApomp_trinity test-data/inputs/no_fa_ext/AsAsp1_trinity |
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| diff -r bfb20dbe1309 -r 918d141a166b orthofinder_only_groups.xml --- a/orthofinder_only_groups.xml Tue Oct 24 06:40:40 2017 -0400 +++ b/orthofinder_only_groups.xml Sun Dec 03 04:30:59 2017 -0500 |
| [ |
| @@ -1,5 +1,5 @@ <tool name="OrthoFinder OnlyGroups" id="orthofinder_onlygroups" version="1.1.4"> - <description>finds orthogroups in a set of proteomes</description> + <description>finds orthogroups in a set of proteomes</description> <requirements> <requirement type="package" version="1.1.4">orthofinder</requirement> </requirements> @@ -9,7 +9,7 @@ #if $init.start=="fasta": #set $infiles = "" #for $input in $init.input_fasta - ln -s '$input' '$input.element_identifier' && + ln -s '$input' '${input.element_identifier}.fasta' && #set $infiles = $infiles + str($input.element_identifier) + "," #end for #set $infiles = $infiles[:-1] @@ -106,6 +106,59 @@ </data> </outputs> <tests> + <!-- test orthofinder -f . -og when input files has no extension fasta/faa/fa ... --> + <test> + <conditional name="init"> + <param name="start" value="fasta" /> + <param name="input_fasta" ftype="fasta" value="inputs/no_fa_ext/AcAcaud_trinity,inputs/no_fa_ext/AmAmphi_trinity,inputs/no_fa_ext/ApApomp_trinity,inputs/no_fa_ext/AsAsp1_trinity" /> + <param name="keepblastout" value="no" /> + </conditional> + <param name="inflation" value="1.5" /> + <output name="specs_overlap"> + <assert_contents> + <has_text text="AcAcaud_trinity"/> + <has_text text="AmAmphi_trinity"/> + <has_text text="ApApomp_trinity"/> + <has_text text="AsAsp1_trinity"/> + <has_n_columns n="5"/> + </assert_contents> + </output> + <output name="unassigned_genes"> + <assert_contents> + <has_text text="AcAcaud_trinity"/> + <has_text text="AmAmphi_trinity"/> + <has_text text="ApApomp_trinity"/> + <has_text text="AsAsp1_trinity"/> + <has_n_columns n="5"/> + </assert_contents> + </output> + <output name="stat_overall"> + <assert_contents> + <has_text text="Number of genes in orthogroups"/> + <has_text text="Number of unassigned genes"/> + <has_text text="Percentage of orthogroups"/> + <has_text text="Number of orthogroups"/> + <has_text text="Number of genes"/> + <has_text text="G50 (assigned genes)"/> + <has_text text="G50 (all genes)"/> + <has_text text="O50 (assigned genes)"/> + <has_text text="O50 (all genes)"/> + </assert_contents> + </output> + <output name="stat_specs"> + <assert_contents> + <has_text text="AcAcaud_trinity"/> + <has_text text="AmAmphi_trinity"/> + <has_text text="ApApomp_trinity"/> + <has_text text="AsAsp1_trinity"/> + <has_text text="Number of genes per-species in orthogroup"/> + <has_text text="Percentage of orthogroups"/> + <has_text text="Number of orthogroups"/> + <has_text text="Number of genes"/> + <has_n_columns n="5"/> + </assert_contents> + </output> + </test> <!-- test orthofinder -f -og --> <test> <conditional name="init"> @@ -211,7 +264,6 @@ <has_n_columns n="5"/> </assert_contents> </output> - <output name="SpeciesIDs" value="inputs/blastids/SpeciesIDs.txt" /> <output name="SequenceIDs" value="inputs/blastids/SequenceIDs.txt" /> <output_collection name="wdfasta" type="list" count="4"/> <output_collection name="wdblast" type="list" count="16"/> @@ -260,7 +312,7 @@ <output name="stat_overall" value="results_fromblast/Statistics_Overall.csv" lines_diff="2"/> <output name="stat_specs" value="results_fromblast/Statistics_PerSpecies.csv"/> </test> - </tests> + </tests> <help> ====================== OrthoFinder OnlyGroups |
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| diff -r bfb20dbe1309 -r 918d141a166b test-data/inputs/no_fa_ext/AcAcaud_trinity --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/inputs/no_fa_ext/AcAcaud_trinity Sun Dec 03 04:30:59 2017 -0500 |
| b |
| b'@@ -0,0 +1,565 @@\n+>Gene.47::Ac102_1/1_1.000_654::g.47::m.47 Gene.47::Ac102_1/1_1.000_654::g.47 ORF type:internal len:219 (+) Ac102_1/1_1.000_654:1-654(+)\n+DKGLLSSVKDSIVQGFQWGTREGPLCDEPIRNTKFKILDAVIASEPIHRGGGQVIPTARR\n+VAYSAFLMATPRLMEPYFFVEVQAPADCVSAVYTVLARRRGHVTADAPIPGSPMYIIKAF\n+MPAIDSFGFETDLRIHTQGQAFCLSVFHHWQIVPGDPLDKSIVIRPLEPQPATHLAREFM\n+IKTRRRKGLSEDVSINKFFDDPMLLELAKQDVMLSYGM\n+>Gene.48::Ac103_1/1_1.000_315::g.48::m.48 Gene.48::Ac103_1/1_1.000_315::g.48 ORF type:internal len:106 (+) Ac103_1/1_1.000_315:1-315(+)\n+CSCHQKRIVHRDLKAENLLLDNDMNIKIADFGFSNSFTPGNKLDTFCGSPPYAAPELFQG\n+KKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYR\n+>Gene.50::Ac109_1/1_1.000_333::g.50::m.50 Gene.50::Ac109_1/1_1.000_333::g.50 ORF type:internal len:112 (-) Ac109_1/1_1.000_333:1-333(-)\n+DHHLEAADVFDFIDKKFEEFDGRIDSNDDRLLRVEVRVLNASLGQCERANLNMQHDKDIG\n+ELKEASLDLTKAVGEHSNLIDRIDRGMSRMFEDFGKHAKKVENIANKVQEV\n+>Gene.52::Ac113_1/1_1.000_323::g.52::m.52 Gene.52::Ac113_1/1_1.000_323::g.52 ORF type:internal len:108 (+) Ac113_1/1_1.000_323:1-321(+)\n+SILKSSNGKRLIPIPADEGSLDPDYESLNKIKPWSPVDDEHIRMDDVSREMQRIHDNLER\n+MRKQTMLNFRPPPPPPPPFDPMMPQLLPVPQFTMPSFPALPDPMAPM\n+>Gene.53::Ac115_1/1_1.000_367::g.53::m.53 Gene.53::Ac115_1/1_1.000_367::g.53 ORF type:internal len:123 (+) Ac115_1/1_1.000_367:1-366(+)\n+AMSKLHEMGAKVVVISSTSLGSDDILVGVGSSINNGSKTSLKIDMPKLPAHFTGTGDLFA\n+ALLLAWLHYHSDNLKLACEKTVSTMQCVLRRTLAKARETTSSTKPTPARIELQLIQSKKD\n+IE\n+>Gene.54::Ac116_1/1_1.000_351::g.54::m.54 Gene.54::Ac116_1/1_1.000_351::g.54 ORF type:internal len:118 (+) Ac116_1/1_1.000_351:1-351(+)\n+NCLPHKYLLSMISYASCQLRMKFSLFCLFLLNKSKPYGNITINNSKYRIHNVICSLSLLL\n+CSILLESMYVMRHFQPVLFVNIFLSGIESTFHCVQTGCSELNTPGVHCVLTFLIILL\n+>Gene.55::Ac117_1/1_1.000_375::g.55::m.55 Gene.55::Ac117_1/1_1.000_375::g.55 ORF type:internal len:126 (+) Ac117_1/1_1.000_375:1-375(+)\n+VCVSWCRDISLVMYRNLDLFQIAGGVGFGVILGWVLRNGVRPRNIGRALGAAQMETSSMG\n+ENGETKLVLVVRTDLKMGKGKIAAQCAHAAVMAYEKLAKHNPELLNDWRYHGQPKVVVKI\n+DSEEA\n+>Gene.56::Ac119_1/1_1.000_465::g.56::m.56 Gene.56::Ac119_1/1_1.000_465::g.56 ORF type:internal len:156 (+) Ac119_1/1_1.000_465:1-465(+)\n+GESKKTAFFCKTCPVVVWSKCAQSAHARIHKNSLPYVCPECGQVIHGSHNVFWKHLHVKC\n+AHHIRQVLFVCKFCKKEYVDPKKLVTHTINHHSTKFHKCQLCPMAFKVQSGVVQHAKSNH\n+NGNVSQKVIFRCPFCVAVYKEDTYTSHLEQHVNET\n+>Gene.58::Ac121_1/1_1.000_398::g.58::m.58 Gene.58::Ac121_1/1_1.000_398::g.58 ORF type:3prime_partial len:133 (+) Ac121_1/1_1.000_398:1-396(+)\n+MIADSVSQLIGDTPLIKLNRLSEEAGATIFAKCEFMNPTSSIKDRVALNMIERALDSGEI\n+NKDTTIIEPTSGNTGVALASICASKGLNLILTMPESMSIERQNLVKFLGAKVVLTPESEA\n+MQGSIDRAYELA\n+>Gene.59::Ac125_1/1_1.000_321::g.59::m.59 Gene.59::Ac125_1/1_1.000_321::g.59 ORF type:internal len:108 (+) Ac125_1/1_1.000_321:1-321(+)\n+CSNLTMKIMSVITSYKLFIHQPKFVLGGCHYNWNTASICWSTLPRDDRFLWLECARLKAN\n+SGSEVKSKLSLSTLRQELDRRPYLDVFLGSRLNGLLSSSGNCELWSK\n+>Gene.60::Ac128_1/1_1.000_465::g.60::m.60 Gene.60::Ac128_1/1_1.000_465::g.60 ORF type:internal len:156 (+) Ac128_1/1_1.000_465:1-465(+)\n+GILSPDLLYTDTFRNLIVAGSNCQNKLLVYKVLDNELHLIQTMMLSADERPKGVCGVPIH\n+LHTSHDGVLVMIGKVQPSDSAFLPLTLDMEYTLKMRFKAIVLDEDETESSASPGSCVQEG\n+SHREGSADRSCALSVNSSMPSPQLFDGGLSCSKGT\n+>Gene.62::Ac135_1/1_1.000_341::g.62::m.62 Gene.62::Ac135_1/1_1.000_341::g.62 ORF type:internal len:114 (+) Ac135_1/1_1.000_341:1-339(+)\n+PPPPPAPQTPLLPPTPPAPSKTPEVPVSAPSTPSRPAPLVKKSTRRCGECVACHRKEDCG\n+RCDFCKDMKKFGGPNKIRQKCRLRQCLNFGTKMKVHKMKDVGFIRDRGESDDN\n+>Gene.63::Ac139_1/1_1.000_420::g.63::m.63 Gene.63::Ac139_1/1_1.000_420::g.63 ORF type:internal len:141 (+) Ac139_1/1_1.000_420:1-420(+)\n+EKNANDLSRTNAAMEADPRTWQGGMEADDRASYGVGGQANWVGPAATAGDLNKQGYYQHQ\n+QHQAYGIEAPESRPGYYAEHGPPLGGAEMATSCDPAVYGSGAQVVPIGPASGGVYEALPP\n+PPHHHHHHQHHQHFPSADMA\n+>Gene.8::Ac13_1/1_1.000_607::g.8::m.8 Gene.8::Ac13_1/1_1.000_607::g.8 ORF type:internal len:203 (+) Ac13_1/1_1.000_607:1-606(+)\n+GTKAPLHSMLNSYQNIKPKTPVNEVRQSPSQSSQIGRNIAEDYIKKCNMAATKIQRWYRR\n+HQPRLKAGEAAMKRLLQAKLQEKEDEMKNEQDQITQKEEQRKRTREERAHRARQQAIEEL\n+QRKREEKRLEIQRKAEQEIAFLQASGKIKRSNIKKKGITKNKGRGQGSHQGSNSDSDDNE\n+RRNKSSTNRSVGRKNDDIFQSK\n+>Gene.64::Ac140_1/1_1.000_860::g.64::m.64 Gene.64::Ac140_1/1_1.00'..b'+KWNRRNTTTIKVVVMLIICIVSLLVLYMLFLLCLDPLMGRRPKTYFEQHNEEDTQSIQPG\n+GMLEDATRPRGAIMMRVKHEVSRVRGEQQKWKGTVQEQRKHIYDRHTMLN\n+>Gene.36::Ac76_1/1_1.000_857::g.36::m.36 Gene.36::Ac76_1/1_1.000_857::g.36 ORF type:internal len:286 (+) Ac76_1/1_1.000_857:1-855(+)\n+RVVHQQKGERNFHSFYQLLYGCSDPMLSEFHLSRKPAIYHYLNQGGENKDGVRNVPEIVS\n+RRSTFRMEKDEMQFTVASINDKGDYKGVVQAMKAIGFGEDQIDTLWKMVAAILHLGNMNF\n+SEANDEAHIEDMSALRTLAKLLEVDAEAAEKALSSRVVATKMEVMEKGHTVEQALYGRDA\n+FAKAIYDRMFTWIVGRINQAIAVKKHEGRSRKDTVIGVLDIYGFEIFDNNSFEQFCINYC\n+NEKLQQLFIELVLKQEQEEYMREGIEWQHVDYFNNKIICDLVEAP\n+>Gene.37::Ac78_1/1_1.000_308::g.37::m.37 Gene.37::Ac78_1/1_1.000_308::g.37 ORF type:internal len:103 (+) Ac78_1/1_1.000_308:1-306(+)\n+LLHQLTNIMNPNVLMAYGVPIVRTNQCAGEFVVTFPRSYHAGFNQGYNFAEAVNFCPADW\n+ISIGRKSVENYRLSHRQCVFSHDELICKMAANPERMELNMAA\n+>Gene.5::Ac7_1/1_1.000_614::g.5::m.5 Gene.5::Ac7_1/1_1.000_614::g.5 ORF type:internal len:205 (+) Ac7_1/1_1.000_614:1-612(+)\n+APRITRSCLAIATPNGRHDICRKKACGTIGNRQAFPQPCGSCPSAPVFDLEHQVTTSVSV\n+WVCARARAARLGSDTLRHLRSGGVGMDALVRHWDTTVNQTGRNPVWHAPTHAHTPIAADT\n+PWSLAPDYNTRHGILGTASRRNGETIQVKSSSTDLSTATMYNGWLGYVYRCQTGRRRRGR\n+AQDTNRDTLQSHLSGPTTQTVPSS\n+>Gene.38::Ac80_1/1_1.000_403::g.38::m.38 Gene.38::Ac80_1/1_1.000_403::g.38 ORF type:internal len:135 (+) Ac80_1/1_1.000_403:1-402(+)\n+LQKFNVSLALHRFSTDSLIEGALESAFFDMDGVIARERRIYKVPGGCTAVAALFFMGKLY\n+VANAGDSRAIVSYKDTVIPMSYDFTPETDRQRIQMMAWHHPELLGNIFCPTQFAYRVNQK\n+DIGQRVLHRDFLIK\n+>Gene.39::Ac84_1/1_1.000_476::g.39::m.39 Gene.39::Ac84_1/1_1.000_476::g.39 ORF type:internal len:159 (+) Ac84_1/1_1.000_476:1-474(+)\n+EMKRKYRYSILAVAVLSSTAFAEEAKNLNMTDYKITDTFFDEAYLNGQFSLTSPSDSTKD\n+TSYDGKLNGFYRLRNMTLDYAQDFKVNGNYDVSKSDNKDEDSKDSYNIRMNGHIDKYLIE\n+VDKNLLLYGSGTFGYRKQLGADDADDPYFQAGAGVGYG\n+>Gene.40::Ac87_1/1_1.000_600::g.40::m.40 Gene.40::Ac87_1/1_1.000_600::g.40 ORF type:internal len:201 (+) Ac87_1/1_1.000_600:1-600(+)\n+HKMDTNKKTTIFGSYGSGDPTMNVPVTSSAGSVMSPYLNFDPAILTTGGDSDFIFPEGAS\n+QQRGRFELAFSQIGGSVFLGGAAGGLTGFYNGLQETKKLTGPVKRTQMLNFITKRGASMA\n+QAVGVVALMYSIFGVVISKIRGADDELNTLAAGTATGLLYKSSAGWRSCVKAGGVGFGLA\n+AVYCLITSRDRIKQMLRMED\n+>Gene.6::Ac8_1/1_1.000_332::g.6::m.6 Gene.6::Ac8_1/1_1.000_332::g.6 ORF type:internal len:111 (+) Ac8_1/1_1.000_332:1-330(+)\n+IKEEQHRATGTGNGILIIAETSTGCLLSGSAIGSRGVPAEEVGVKAGQMLLDNLGHGGCV\n+DDYLQDQLIVLMALAKGTSRVRCGPVTLHTQTAIEVVKMLAEVNFTITQV\n+>Gene.41::Ac92_1/1_1.000_677::g.41::m.41 Gene.41::Ac92_1/1_1.000_677::g.41 ORF type:internal len:226 (+) Ac92_1/1_1.000_677:1-675(+)\n+EFFQLVLEEIFNPDIGMFIYDEETRNFWFNSTSFENDNQFTLIGIVLGLAIYNSVILDIH\n+FPMVVYRKLMGKLGTFEDLKLSHPTLAKGLTELLQFEGDVEETFMQTFCISYTDVFGSTI\n+TDLLKPDGDKIPVTNENREEFVNLYADYLLNQSVNKQFRAFQRGFLMVTDESPLKVLFHP\n+EEIELLVCGSKNFDFHALEKATEYDGGYTASSPVIRYFWEVVHAF\n+>Gene.42::Ac94_1/1_1.000_391::g.42::m.42 Gene.42::Ac94_1/1_1.000_391::g.42 ORF type:internal len:131 (+) Ac94_1/1_1.000_391:1-390(+)\n+CSDRNWHTNTSSSTNNYTPTVIITRLLMASQNMDPASAEMSTKDVINPSVGAKESHSATK\n+RLQKELMTLMMAGDKGISAFPEGDNLFKWRATIQGPKGTVYEGLSYKLVMEFPASYPYTA\n+PTVRFETPCY\n+>Gene.43::Ac95_1/1_1.000_580::g.43::m.43 Gene.43::Ac95_1/1_1.000_580::g.43 ORF type:internal len:194 (+) Ac95_1/1_1.000_580:1-579(+)\n+CTLWFALCVFSIWLYRKKHAKKKMAKNGNSTSMLPSFASHKSDEGRRQENLFNSLNVPNY\n+LQKDANNHVDNLQPDVTNVGSDMSKPDSGSENLYNLPNITQAPMKTFYHKNSSVAQPYAT\n+TTLIANNLSSPPGGESAFRPIQQGYVQQPHNGSGSSDSCQKPDISTDSNPDNVRHKTGGC\n+ISGNVHGNKLYPD\n+>Gene.45::Ac98_1/1_1.000_326::g.45::m.45 Gene.45::Ac98_1/1_1.000_326::g.45 ORF type:internal len:109 (+) Ac98_1/1_1.000_326:1-324(+)\n+EFCPATHQRSLPLTLQDGGDKSSDQRSLGGRNISPLSRCSGLTSSSQHIFKDKQCSGPAV\n+AGNRSGLEFDRRVDRTDRDQPENDATERKAVHSADVSDTKVGQNAVRP\n+>Gene.46::Ac99_1/1_1.000_368::g.46::m.46 Gene.46::Ac99_1/1_1.000_368::g.46 ORF type:internal len:123 (+) Ac99_1/1_1.000_368:1-366(+)\n+DYFPDEHALEHEYIFRNYALLPDDVNTDHRSKRSKPLTTVEVYREMTAQRLAQGFQIVML\n+PKQTSYSANASLSSSPYQTSSLMRRHQPEPTEEVILSIGRIFHRLTLNGPHINATMYWPR\n+HP\n+>Gene.7::Ac9_1/1_1.000_303::g.7::m.7 Gene.7::Ac9_1/1_1.000_303::g.7 ORF type:internal len:102 (+) Ac9_1/1_1.000_303:1-303(+)\n+AIRLRRSLSSGKIHEAWILSDTDSTMSLPCPPGTNPSSTSADPYLVITRKTNTRIGRIIV\n+FEVMMSRCVICSLSSLLGHIYVFIGTIQIKTSLTTSFIIDN\n' |
| b |
| diff -r bfb20dbe1309 -r 918d141a166b test-data/inputs/no_fa_ext/AmAmphi_trinity --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/inputs/no_fa_ext/AmAmphi_trinity Sun Dec 03 04:30:59 2017 -0500 |
| b |
| @@ -0,0 +1,48 @@ +>Gene.14::Am100_1/1_1.000_597::g.14::m.14 Gene.14::Am100_1/1_1.000_597::g.14 ORF type:internal len:200 (+) Am100_1/1_1.000_597:1-597(+) +PQYMHEIRTVLITTSTMTTMGQFVLGGLCLFLQRVQIGNMQGIDQMINSALETVPDDTSE +PIDDEHTARVELDLPIIQDTWAQIERLNNQNDMIDSQTNHQLPQIENMQSIDEMISSAMD +TDNTSETLHGENIVRVELDMLFAQDTWTEIQRLNNQNGHGETHRQKRKTIRDFKRHWSDR +VIPYAIAENHFSAADLQQI +>Gene.5::Am10_1/1_1.000_318::g.5::m.5 Gene.5::Am10_1/1_1.000_318::g.5 ORF type:internal len:107 (+) Am10_1/1_1.000_318:1-318(+) +SNFATTTTTNNNNNSCNTATNNNNNTGNTNHVTTRNNIFTTITNTTINSTYNNNNTSSVA +TYITQNNYNNIRIAFDTYTSNNFNNFCATNICHNSPFSSPYLTTHY +>Gene.15::Am113_1/1_1.000_362::g.15::m.15 Gene.15::Am113_1/1_1.000_362::g.15 ORF type:internal len:121 (+) Am113_1/1_1.000_362:1-360(+) +NVFTSPGALIPSTCLSPFGTMGDSFCALPPSESRWNGMSQMSQMATGNSLFGKQGFGQGF +PAHMNMNMNGLGGAGNMGLGNGLCSTPPGNTSMYSHPYGVTSTCDTSLTNGSVTSSVATG +>Gene.16::Am117_1/1_1.000_300::g.16::m.16 Gene.16::Am117_1/1_1.000_300::g.16 ORF type:internal len:101 (+) Am117_1/1_1.000_300:1-300(+) +IEFIGTMMNDVCNAPANQCTICSRMFSTQTDLVQHISIHTTNSRWRCDLCGRGYTKRDAL +EGHINARHTNTLQFACTKCDLAYAYKSALQRHMKYKHPDP +>Gene.7::Am16_1/1_1.000_298::g.7::m.7 Gene.7::Am16_1/1_1.000_298::g.7 ORF type:internal len:100 (+) Am16_1/1_1.000_298:1-297(+) +HFFYFSTGTHYPGTVLLKYQNIKETQCPRLCRQYFECHGFLMKLNGGIIPTDLGTCYLLS +SKSDVPLTDVWGTEAASSFIGAEEAASSFYHYCPEGMAY +>Gene.8::Am37_1/1_1.000_360::g.8::m.8 Gene.8::Am37_1/1_1.000_360::g.8 ORF type:internal len:121 (+) Am37_1/1_1.000_360:1-360(+) +TKFDKDGKKGFQQINKNLHLNEAISFCAGESCGGTLDTVEAIYNYCKTQQFKRCIFNSGD +SFSNKEIFNFLAEANKFKNEDDPFGFKLVLTWTNKLKSSMEDYMNNDNDYTDGQIIGIYS +>Gene.9::Am41_1/1_1.000_327::g.9::m.9 Gene.9::Am41_1/1_1.000_327::g.9 ORF type:internal len:110 (+) Am41_1/1_1.000_327:1-327(+) +QRFGWEDEDEVDALVMDDESDGGVNVSNRDSEESSESDSNSESDNDSSDLESSDNDQSID +ENDENELENWVAVDQDPIAPPFTGVPGVHLPPDTNPLNMEACDYFSLFL +>Gene.10::Am45_1/1_1.000_579::g.10::m.10 Gene.10::Am45_1/1_1.000_579::g.10 ORF type:internal len:194 (+) Am45_1/1_1.000_579:1-579(+) +DTRMSLAGFKKQLNKANQYMSEKIGGAKGTELDYEFHDMEKKKIDVMGKLVDELMARTHE +LLQPNPASRAKLSATKSISKLRGQATHALYPQPEGQLGECMIKYGKEMGDTLFGESLVQT +GESYKQLAEIKYALEDNVKQNFIEPLHHLQSKDLKEVSHHRKKLQGRRLDYDCKKRKQTK +GDHDHAAGGGAAH +>Gene.11::Am67_1/1_1.000_319::g.11::m.11 Gene.11::Am67_1/1_1.000_319::g.11 ORF type:internal len:107 (+) Am67_1/1_1.000_319:1-318(+) +DKNMAPIKQLLCDINLAHIILLFSIGYLYLHIGDATGSCKSKKRQFKLVKSSTVGPGPLF +FSDDILMKKVECERLCRQYFECGAYAMEWMDGVTSAEYGNCHLYYG +>Gene.1::Am6_1/1_1.000_361::g.1::m.1 Gene.1::Am6_1/1_1.000_361::g.1 ORF type:internal len:121 (+) Am6_1/1_1.000_361:1-360(+) +TTQSSSETFTKTPSETVRSEEDSAKKQKTFIKSPQAVAVSEESTKTNLTFVAKSSDVNSN +SPLSTVHQASGSGETFTKTPVETDHTEQPSGQPEHKQASTDLVPPESTKEPLIHSGNVLG +>Gene.2::Am7_1/1_1.000_325::g.2::m.2 Gene.2::Am7_1/1_1.000_325::g.2 ORF type:internal len:109 (+) Am7_1/1_1.000_325:1-324(+) +GARDVEDVVLVVAVVDVVLLFLAVAPLPLDVAVVVLVEKRLVVVSATNSSPLIRINGLSA +IRIPRRLLSNLADFSLLVILGSVLVKSSLSLITPYANLHTLPSSRSEE +>Gene.12::Am92_1/1_1.000_509::g.12::m.12 Gene.12::Am92_1/1_1.000_509::g.12 ORF type:internal len:170 (+) Am92_1/1_1.000_509:1-507(+) +LAGVLDGVLGGYPVFLMASFSYISDITLHSNRSLRIVILEVCISLGGTISYMASGLLITH +LNFLGTCIVLHIIVVLDLALVAFYLPETVQKQEDITFWTLDHFKQSFRVYLEDEGTGRRG +LLLTSMLVLLILCPAAIGEDDVLALFVLNSPICFTPDLLGYYKGTFFLV +>Gene.13::Am99_1/1_1.000_399::g.13::m.13 Gene.13::Am99_1/1_1.000_399::g.13 ORF type:internal len:134 (+) Am99_1/1_1.000_399:1-399(+) +SKPLSQCAPHGMECDENQEPIVVQTSHLTHHNNSPIHQPYPLPINKRSVGLYRILQGHAL +SKILTAAYMATLFVFIICILSLYAMFGEYGVLTKNQTAHAWPWYIFNTAARMCELGAAVC +TSRVCQGLLHHRM +>Gene.4::Am9_1/1_1.000_360::g.4::m.4 Gene.4::Am9_1/1_1.000_360::g.4 ORF type:internal len:121 (+) Am9_1/1_1.000_360:1-360(+) +SHQRLLIMLSCIVKHFYSRQPLIIEVISYIVNSMENQMDLIKEGRFCTCKSAFYYKMCNK +ITILKWIHIYANKGFMSYDLRVDLSSRSCMYLCKPLTTTTIKLLDIIQNYRHIFQIKLSS |
| b |
| diff -r bfb20dbe1309 -r 918d141a166b test-data/inputs/no_fa_ext/ApApomp_trinity --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/inputs/no_fa_ext/ApApomp_trinity Sun Dec 03 04:30:59 2017 -0500 |
| b |
| b'@@ -0,0 +1,135 @@\n+>Gene.41::Ap101_1/1_1.000_309::g.41::m.41 Gene.41::Ap101_1/1_1.000_309::g.41 ORF type:internal len:104 (+) Ap101_1/1_1.000_309:1-309(+)\n+VCVCVCARCVCVCATCKLCTWCVPKEKLLKHNGPPIDHNDPTTKQNLGHFISRTIWKLNS\n+SLSNCNHSPRTHNHSSPSSPGEFKFTVNNEDKGIFVCQIKVEQ\n+>Gene.42::Ap102_1/1_1.000_382::g.42::m.42 Gene.42::Ap102_1/1_1.000_382::g.42 ORF type:internal len:128 (+) Ap102_1/1_1.000_382:1-381(+)\n+TDEYDPQRPNDYESYIKMRKDQRQREREEERKRELEEREKRRRERHRDEYDSDEDDEFNR\n+KRRRSRRDDDDDHRRSSEHKARGAAIAPPQSLIESSKPDPKEVSLPQPENKLTLNTGEYG\n+GGFSVGK\n+>Gene.43::Ap108_1/1_1.000_314::g.43::m.43 Gene.43::Ap108_1/1_1.000_314::g.43 ORF type:internal len:105 (+) Ap108_1/1_1.000_314:1-312(+)\n+LDDMDIFNSPPLGIFSVIRKMPDAAELEKTMSLYDRIQRDLELAEMTYPPQNAFEEWSRW\n+TKEGKMWIYPVDNEQGMEEEANVGFHEHVFLDHMLEDFPKRGPV\n+>Gene.7::Ap10_1/1_1.000_338::g.7::m.7 Gene.7::Ap10_1/1_1.000_338::g.7 ORF type:internal len:113 (+) Ap10_1/1_1.000_338:1-336(+)\n+PYSAAKTTAQAATDDLKRRQEELERKAEELQRKEQELQRNMGHQARVNNFPPLPEKCCVQ\n+PCFYQDFELDIPLEFQRIVKTVYYVWIAYICLLILNVLGTLAYFIAASKAGH\n+>Gene.8::Ap11_1/1_1.000_406::g.8::m.8 Gene.8::Ap11_1/1_1.000_406::g.8 ORF type:internal len:136 (+) Ap11_1/1_1.000_406:1-405(+)\n+EVPSVAVPGVVSTVVQDSAHKIFIGGLPNYLNEDQVKELLTSFGPLKAFNLVKDSATGLS\n+KGYAFCEYLDPSITDQACAGLNGMQLGDKKLIVQRASVGAKNAQGGPNVLPVQLQIPGLN\n+MAQVQGPGPTTEVLC\n+>Gene.9::Ap12_1/1_1.000_582::g.9::m.9 Gene.9::Ap12_1/1_1.000_582::g.9 ORF type:internal len:195 (+) Ap12_1/1_1.000_582:1-582(+)\n+DGVALFCFLHAFYLVKTQPLLLSLFMFVVVLFCYFLSSRPDTMLSHKHEVIGRFPSMSTY\n+IYFSPLLVHPSIHSSTCLSSTPFWLLLASAVAVVIVGGGGDVSSVGVDGHSSQRHLSASG\n+GVGLFRCRSTSCAERHLATRMRYDVARPPLKSPVIGPHTHTHSCNNKTDKTLALLRIQSL\n+FNRLALVHVTIWGR\n+>Gene.11::Ap13_1/1_1.000_481::g.11::m.11 Gene.11::Ap13_1/1_1.000_481::g.11 ORF type:internal len:161 (+) Ap13_1/1_1.000_481:1-480(+)\n+VESRAVKKMSLVDAIRNGLYDQEHGTISDPNTATDMTVLEAINKGLIDTKNIRVNVPGTS\n+EIISIDSALAENILDPLSGVLSNPATGECVDLLEAEQAGLMFVGVSEEQLKQPDLKQIVT\n+EGLCDPDSGTIQDPDTGKNMTVIEAMQTGLVDSTAPLLTV\n+>Gene.13::Ap18_1/1_1.000_318::g.13::m.13 Gene.13::Ap18_1/1_1.000_318::g.13 ORF type:internal len:107 (+) Ap18_1/1_1.000_318:1-318(+)\n+PACKTPFYFVCQSRSKVTTVVSEKHTDAELVHTLCIRHRSTVAWDILAGERAKFSQPRAE\n+SVSSASDWRVFGSDRRSIGRVPSIDLCPFSASRRICLHSGRRPSQP\n+>Gene.14::Ap19_1/1_1.000_302::g.14::m.14 Gene.14::Ap19_1/1_1.000_302::g.14 ORF type:internal len:101 (+) Ap19_1/1_1.000_302:1-300(+)\n+PAIVQRASGLAMSEIYHLRFCDGDRLNVSCPDNWQIHISSSYFVYVSGVDGRGVRDCRQQ\n+FNGTSQCLRKIQFYDPTYFGQLIQSCQSKQRCDDGLLAKT\n+>Gene.15::Ap20_1/1_1.000_780::g.15::m.15 Gene.15::Ap20_1/1_1.000_780::g.15 ORF type:internal len:261 (+) Ap20_1/1_1.000_780:1-780(+)\n+HEGPVWQVAWAHPMFGNLIASCSYDRKVIIWKETGGTWAKLYEYNNHDSSVNSVCWAPYE\n+FGLMLACGSSDGSVSVISSTGDGTWDSKKINNAHRIGCNAVSWGPAVQHGALLDPSGSQK\n+PVKRFVTGGCDNLVKIWKEENDQWIEEQKLDGHCDWVRDVAWAPSIGLPRTVIASCSQDC\n+QVIIWTNDGSGNWTSKVLHKFNAAVWHVSWSVTGNILAVSGGDNKVSLWKETIEGQWVCV\n+SDVNKGHGQGQITENKSVVS\n+>Gene.16::Ap21_1/1_1.000_468::g.16::m.16 Gene.16::Ap21_1/1_1.000_468::g.16 ORF type:internal len:157 (+) Ap21_1/1_1.000_468:1-468(+)\n+AAIQNAKYIIAQVNPNMPRTFGDGVIHMSHCDAMVQVTDPLPEIHVSKCTEVETKIGKFI\n+ADNLVHDGATLQMGIGSIPDAVLAQLGEHRDIGIHTEMFSDGVIDLVMKGVITNSKKVIQ\n+TGKILSSFAFGTKKLYNFMNNNPFVVMCDVAFVNNT\n+>Gene.18::Ap23_1/1_1.000_307::g.18::m.18 Gene.18::Ap23_1/1_1.000_307::g.18 ORF type:internal len:103 (-) Ap23_1/1_1.000_307:1-306(-)\n+CVTTIPVITEAVYCVSIKWVPRIIVPGWLTVSMSLYCRKFLSDTCVVSQCHQTFPDVLLI\n+TSSFLDNLDAEIFSSSFASVRTRPPSLKTNVYFFSTTWLVTL\n+>Gene.19::Ap32_1/1_1.000_302::g.19::m.19 Gene.19::Ap32_1/1_1.000_302::g.19 ORF type:internal len:101 (+) Ap32_1/1_1.000_302:1-300(+)\n+FLEEIKIAACDKEKRLSDLGEKVRQLEAQLAQQIKECEMKDFSLQQEMAKCAELTAAIQG\n+KEATISELSTGLTEKTNQMMMMLNENQQKAEHIEALQTET\n+>Gene.20::Ap33_1/1_1.000_569::g.20::m.20 Gene.20::Ap33_1/1_1.000_569::g.20 ORF type:internal len:190 (+) Ap33_1/1_1.000_569:1-567(+)\n+CNSDAPGNIGNHCFHSNVIGTTSHDNITPHQVQNYQYQSPSMTSSMTSSSSLVSSMNNSS\n+MGSPQVYANQMDSANANSPMSRSYDGGLTYAQYKNQLRPKGGFYSQYSGDHPSSTSSSTE\n+SLNSKCSVSSNNTSQPSEVTRRPISTSKGHVAQAINRFSQPVTQASNTNNVNRVETGTSS\n+TGSVSIMPS\n+>Gene.21::Ap34_1/1_1.000_337::g.21::m.21 Gene.21::Ap34_1/1_1.000_337::'..b'SYDDTEAWPSLFDDFVEYENDRQNQNVKVDKVERDYY\n+D\n+>Gene.29::Ap59_1/1_1.000_402::g.29::m.29 Gene.29::Ap59_1/1_1.000_402::g.29 ORF type:internal len:135 (+) Ap59_1/1_1.000_402:1-402(+)\n+PRMINIQSTGWLLHRLHEGANINTAGVKDTPIALFCAGSSQHNLHRVLCLFSGCVCRTCS\n+DHICCVLLMNPEKELVGFGIQNSLALHLCRLTNASLCACVSMHMYFVCICITSVHMYLIY\n+KAFNLYMLNQQKQI\n+>Gene.30::Ap67_1/1_1.000_300::g.30::m.30 Gene.30::Ap67_1/1_1.000_300::g.30 ORF type:internal len:101 (+) Ap67_1/1_1.000_300:1-300(+)\n+RHWTVLGLRLQGDFFGLPRSGKMSEAVNPESTSSILPTITLSTDTDQAWPQLIWIPYVTL\n+TLILLLLTCLSFMHYHFKNRGKYLDAVYKQNNLTPCPKKY\n+>Gene.31::Ap68_1/1_1.000_323::g.31::m.31 Gene.31::Ap68_1/1_1.000_323::g.31 ORF type:internal len:108 (+) Ap68_1/1_1.000_323:1-321(+)\n+GRTRDHQQLLEASKCKPIQYPKPDGVVSFDLLSSVALTGTNHDHDQPPHLTLKDDEVPVA\n+RNLAIYDGPEERFCPAGVYEFIDTDQGKRLQINAQNCIHCKTCDIKC\n+>Gene.2::Ap6_1/1_1.000_390::g.2::m.2 Gene.2::Ap6_1/1_1.000_390::g.2 ORF type:internal len:131 (+) Ap6_1/1_1.000_390:1-390(+)\n+ENVLASHCPVGLSSTRYWQSEMADLPPGDAERGKKIFIQRCAHCHSVEAGGKHKQGPNLH\n+GFIGRKTGQAPGYTFTEANLKKGIIWDKETLDIYLENPKKYIPGTKMIFPGLKKKADRAD\n+LIAYLEESTK\n+>Gene.32::Ap75_1/1_1.000_532::g.32::m.32 Gene.32::Ap75_1/1_1.000_532::g.32 ORF type:internal len:178 (+) Ap75_1/1_1.000_532:1-531(+)\n+LEAAKKEITSQKERMSEMKGHLSAMAAITSGPEPDDVEVATSDEDFDDTHPELAAMKKSM\n+HQQEMRYSAALNQICDLQEQVKILQEKLAETQDKESEAQLREEVTKLRNKVMEYEETMKT\n+LEEDLKTMSQIAGESQGSLNTTQDELIKVTEDLAQLYHLICELNGETPNRVMLEHVQ\n+>Gene.33::Ap77_1/1_1.000_337::g.33::m.33 Gene.33::Ap77_1/1_1.000_337::g.33 ORF type:internal len:113 (+) Ap77_1/1_1.000_337:1-336(+)\n+CMAPPHSPMQYTWPFGHLYQCPLDRPIAVSICFLSSSLIPNPVRNTNRCSSFRASSTSFL\n+STSVSGVFLFNNCLAFSNFSSTTAFIFGFVSWILMSYSIVFARRRRRIFSIS\n+>Gene.35::Ap78_1/1_1.000_428::g.35::m.35 Gene.35::Ap78_1/1_1.000_428::g.35 ORF type:internal len:143 (+) Ap78_1/1_1.000_428:1-426(+)\n+VSRSEERRSTLGIITVKTIREPLRPYVIKRVLDPRTGEWISEQQASKEEILFVSRGIYHN\n+RKTGERMLIAEAIEKKLVEAEYLGDAPEPEVISNTYAVRSVVDLRLKKVITFGEAVRRGI\n+IDKESGTYRNTLTGETMYVGDA\n+>Gene.3::Ap7_1/1_1.000_421::g.3::m.3 Gene.3::Ap7_1/1_1.000_421::g.3 ORF type:internal len:141 (+) Ap7_1/1_1.000_421:1-420(+)\n+FVMNLFDWYSAGYSIIIVAFFEVIAISWIYGLQRFKKDIQMMVGKGRWINASFYYYWYPT\n+WFIISPALMLYILVTMSMQFAPITYGGSISYPSYADGIGFLMVGLALIYLPVLAMIEYCK\n+AHGFFSTMQKILRPKPDWGP\n+>Gene.36::Ap82_1/1_1.000_313::g.36::m.36 Gene.36::Ap82_1/1_1.000_313::g.36 ORF type:internal len:105 (+) Ap82_1/1_1.000_313:1-312(+)\n+SLLREPASVCASSSRELAETCLRLLLKLDTTYTTTDEAITDLLTVTVCQLRLADGRLSQP\n+TTTRPCSTDDVVYVPIPTEFFHSYSFEQLVAFYVQSAMTNQMPR\n+>Gene.37::Ap85_1/1_1.000_386::g.37::m.37 Gene.37::Ap85_1/1_1.000_386::g.37 ORF type:internal len:129 (+) Ap85_1/1_1.000_386:1-384(+)\n+SPAGRNVSWDRREAWYRDAERPRDYPPLPPPPPEVLRRSRSRSPIAPVAYSPRRSSPLRG\n+HSPYQRGRSSPPPLPRGRTPPRGRTPPPPRGRTPPPRGHTPLQRGRSPLPHGRSPPRARS\n+TPPLRATP\n+>Gene.38::Ap87_1/1_1.000_309::g.38::m.38 Gene.38::Ap87_1/1_1.000_309::g.38 ORF type:internal len:104 (+) Ap87_1/1_1.000_309:1-309(+)\n+EIPEILDMLPDYRGKRVLELGAGIGRFSGVLAKEAAHLTVVDFMESFVEKNKEINGHHTN\n+IEFIQADVSKLEVPQKSFDLIFSNWLLMYMSDEELKTFFVNCL\n+>Gene.39::Ap89_1/1_1.000_302::g.39::m.39 Gene.39::Ap89_1/1_1.000_302::g.39 ORF type:internal len:101 (+) Ap89_1/1_1.000_302:1-300(+)\n+VYHIKAEREEQGNRFIYHIKTEREDITDDSSDIYDPPPIYVPVKVNSTSHTSPSSSTKIS\n+IPFESPKGAKSPSAGTSWPKFTPDPERQPKLVLNPGKRRT\n+>Gene.5::Ap8_1/1_1.000_417::g.5::m.5 Gene.5::Ap8_1/1_1.000_417::g.5 ORF type:internal len:140 (+) Ap8_1/1_1.000_417:1-417(+)\n+AKTGFNTNNCYSTRFRNTFAYNQREWCSVLLCMTVLLLNMQRKRALPSSHLSINTAWYSG\n+QGEQEERLIVSTRACSPTHTHTSSHVCTRTRRPKHTNTHTGSRMFIRHSSSSSCHSTRTT\n+SRLSLGIIFLWANRGPIRQ\n+>Gene.40::Ap90_1/1_1.000_351::g.40::m.40 Gene.40::Ap90_1/1_1.000_351::g.40 ORF type:internal len:118 (+) Ap90_1/1_1.000_351:1-351(+)\n+DGALFGASGSSIRINGVDVVLASRLITRRVLPLSADLAVFASLFFYGMFSIFNHFVAVCF\n+HGNMALILSRRNAADCLSAFMTFNFFILYDSAAYLQYFFVLLFFYLLFFLFISQLIV\n+>Gene.6::Ap9_1/1_1.000_470::g.6::m.6 Gene.6::Ap9_1/1_1.000_470::g.6 ORF type:internal len:157 (+) Ap9_1/1_1.000_470:1-468(+)\n+LEEEIEELMHENDDEDGVEVEKSKDKHESVERAEKRGSNKNDVKHDEKDRSKDNKENELG\n+QIKEVEDMGPSVDRSENEREAVGKGIKSEQEGSGSKANKHQVSPTNQGCSHTTNESEKKE\n+PSHPRSQSQQDSDDDDGEGETLHEKSSSEGDDEGNQ\n' |
| b |
| diff -r bfb20dbe1309 -r 918d141a166b test-data/inputs/no_fa_ext/AsAsp1_trinity --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/inputs/no_fa_ext/AsAsp1_trinity Sun Dec 03 04:30:59 2017 -0500 |
| b |
| b'@@ -0,0 +1,1124 @@\n+>Gene.94::As103_1/1_1.000_719::g.94::m.94 Gene.94::As103_1/1_1.000_719::g.94 ORF type:internal len:240 (+) As103_1/1_1.000_719:1-717(+)\n+EGCEMLTKILPSLSNLAVLDLTSNNLTSTSLQNLANSATDGGQNLQHLHTLTLSHNPLGD\n+ACTSPLALLLSRLPGLVSLGLAACQLTLKFFQIHKASLADVLRGHNLQRLDVSYNSLGSI\n+GVELLLTCLNAASLSSLMLASVVKVYSGNTVTKHLCRYVTQPGCNLQHLNLDACYLMPDL\n+VPDICSFVQSSPSLASLSLSTNAKLTQDDLRQILEASVGSQTFQALTMSGGHFPGCLGT\n+>Gene.95::As104_1/1_1.000_525::g.95::m.95 Gene.95::As104_1/1_1.000_525::g.95 ORF type:internal len:176 (+) As104_1/1_1.000_525:1-525(+)\n+FRNISETLRKEFTFTLRYRKMAANVIQRTISKHNNSNSVRLVGIHVRRGDLNSSKAKSRG\n+FHMAPPQYFYNAMKYFRTKHRRVHFIVSSDNPHWCRQHIQGADVTIVEGNPGALDLAVLA\n+RCDDVIMSVGTFGWWAGWLAGGEVIYYRDWYNPGSSIDRVQNGVDHFPPTWIAMT\n+>Gene.97::As108_1/1_1.000_384::g.97::m.97 Gene.97::As108_1/1_1.000_384::g.97 ORF type:internal len:129 (+) As108_1/1_1.000_384:1-384(+)\n+FVHISSTMYLLVIGGLLVTVGLYFINRLLSPKPLDIKSRHVLITGGSSGIGRALAIEAVK\n+AGANVTILARKQTVLHEAKQEIAKFIQNPEKQKVLTVSVDITGDYDMLQEEIEKAQPPTQ\n+SSSPPSGS\n+>Gene.98::As109_1/1_1.000_747::g.98::m.98 Gene.98::As109_1/1_1.000_747::g.98 ORF type:internal len:250 (+) As109_1/1_1.000_747:1-747(+)\n+FGCDRGDNRLPGNDRDISKLLHQSSYHNTVEYVAPFHPLPNPWDSGRQVLTPTRNQGPYD\n+TPHGYQESSAESPSVTSHVNQSNIPLPQNVDRIRNYRPTTQITQYNVHERPEDTVLCLTG\n+LPPSVKHGDLWYTFRRYGDIVTISVRPGDAGVAKVQFRLRQDAESVLRLFTQRGYCLWEG\n+RAIGISRLEDYDRSVAVAAACPVQTQQVSVTSKTSEISYWKQVSNHHGYCVNEHTVEQRE\n+FVSYHVHSS\n+>Gene.100::As110_1/1_1.000_2367::g.100::m.100 Gene.100::As110_1/1_1.000_2367::g.100 ORF type:internal len:790 (+) As110_1/1_1.000_2367:1-2367(+)\n+WFKIVNSHCFFPSDLRSVFASFRECCEERKRNDLPDNLISSCIFLRFLCPAILSPSLFSL\n+TQEFPNERAARSLTLVAKTIQCLANFTQFGAKEEFMTFMNEFVDNEHSNAEMFLQEISRP\n+DPREQPVTFEAYVDLGKELSVVHSLLLESFEKVNDAASVKLSKLRGILDDITDAQSRPQT\n+LRRNPLNSSKGIYDNVNLIKTPHDLNANKPGEVVLTELSYRDAKVTKSSESPVAHKGFTE\n+TLYSSQGRMRTGIMETSGYHSTEDYVRYTRLEDPPSVTAFSMSPSTYSSKRPEEKQVNRC\n+WDKMVRAAEMVNGDKVDLITFVDDSEEVQNSSIDSADQVSVSQLSTVASSGYQSIGYSQS\n+NSPVELPQDNVNYQGAHGSQQPLSFSNPLFGHGNTGTSRSSGRGEEVFQSPPSSVVKDQV\n+FRSPSTSSLSSDDGLLSSTASSSRKTQPATLPSVGHNHNGFDTSSSQSSRSTHTGTPFDR\n+RLRNGSSSSMDSAQSSASQDSRHRLHRQHAAHRPYHSPHLAKSHPHVNTAPSRDNRESSR\n+VAPNLATAELSRSADFSASHLRTPEVSKRGGPESASHTAAGSGALGVYTPPESPHFGTLP\n+SAWRPVAAARTTTTAPRSPATYSRSKSMPYKDEQHKSAQDYQQELSVLRQQLAVTQNMLA\n+ETQERLDSEEVHRQRLVSEMSQALQAREASVQEQGTGKQHQIQDIMSRLHSVEQTRRSEQ\n+DKLQIVISRKQHLIDEQSRKIQSLDGANTKLLSALGQLKDRCQIQSRNGLASPLRQHVPL\n+DNDDFKQSC\n+>Gene.103::As111_1/1_1.000_987::g.103::m.103 Gene.103::As111_1/1_1.000_987::g.103 ORF type:internal len:330 (+) As111_1/1_1.000_987:1-987(+)\n+PILHVHVPSMIFDFSVDDSVDVCEERLIVPAAFCVMFHVVSGSSYQSEGYHFVHAPRKVV\n+AAVVLDQPALEDGHEEQPGQGVPVYDLQSLVCRQDEHHALDHSQLVGDAAVHDLMLVVGR\n+VHVLVEPDVLVQQRVHAVEQRVVNDEAEGELCQDLDHGRGVVGQGARVLDPGLSAPRPLV\n+RIHAVILLHRERVQEHQRHHVFRDLQNDCQHTCVLPAQLRVNLVAVKMAYSTNGERYGEQ\n+YDIADYGPPRFEVYTIESPRRSQSQPQRIHDGLKIVVVVDDTGCQSNVEGATNSPPSIDG\n+SQSLSDAQRRHDPDLWRPRSLRLTIDLLY\n+>Gene.105::As115_1/1_1.000_744::g.105::m.105 Gene.105::As115_1/1_1.000_744::g.105 ORF type:internal len:249 (+) As115_1/1_1.000_744:1-744(+)\n+RRIYVYTRQQKGAMSEPTAAPGVGESASSGNPIGGEAGTDDRPPRGVSATMWQKFQHLQK\n+RRLEVTRGSTVKRVRRIQSDVIDRVAKEMTSDEDKNIFHSCTGITLEGAPVSPLRSADRR\n+AEQSAQACLRADEERPDVEDKRESWCDVKPFLGVNDHLKGLDPGRHAPKTALDEEIDQAV\n+SEGEYGRAESLSDRLATRDFGKKVADAFDAKRFVEVKQKEDERKKMKRKKKLNWGFEHKQ\n+RWEMKGNM\n+>Gene.106::As116_1/1_1.000_1098::g.106::m.106 Gene.106::As116_1/1_1.000_1098::g.106 ORF type:internal len:367 (+) As116_1/1_1.000_1098:1-1098(+)\n+RRPKSPSRAPRPRSSHITTPVFDSSRRPKKGILKNSRLATDSRDSLVVSDQSTSDQDSQV\n+WMTAHSPHGDSSTAAGDNMHNNTSTTDSCYDLNDIEAVLESLLSETETTEVKFQREIVKS\n+VEQPSVDSGIVADKSREISAQELYPTELSPGRANGVPAQCHAHARVSSDLGQSVGFDLVS\n+EPKPLTSTPTSGPLTSGPRRGLRGRGRCADPTWRYSAGSQGSTSSGDLLDFSYDSGDGDP\n+ALAEYFSMPLAPPGDPVLSPGDFCHDVDLDLRVSDDPEEDEDLGPPPPLPQRPPPAYNGD\n+PTPLPALTPPYQISCHHDDDIIKQILWLEEQEAAKFSPPAAQSEHVSWTEVEEIYQQALQ\n+LQKEWS\n+>Gene.108::As117_1/1_1.000_3840::g.108::m.108 Gene.108::As117_1/1_1.000_3840::g.108 ORF type:internal len:1281 (+) As117_1/1_1.000_3840:1-3840(+)\n+KAATTEAQTGQDTEESRPRRNKSKGRRSDGKEEFPNAKDDCSVDATQKMSQKPQAAVPQY\n+ELPTLRKRESGPGPPPSTPV'..b'ISAAELRHIMTNMGEKLTEEDVDEMLNHAEMDERGEIKYTDFICKLMAE\n+>Gene.74::As83_1/1_1.000_313::g.74::m.74 Gene.74::As83_1/1_1.000_313::g.74 ORF type:internal len:105 (+) As83_1/1_1.000_313:1-312(+)\n+NFFFPAFCILFPRFPRFCLINFFSFLDNFFLPPFFILRPLFPRFCLLNVFPFLDNFRFPA\n+FCNLFPRFPSFRLLNFFPFLDNFLLPPFFILRPRFLSFCLLSVF\n+>Gene.76::As85_1/1_1.000_1071::g.76::m.76 Gene.76::As85_1/1_1.000_1071::g.76 ORF type:internal len:358 (+) As85_1/1_1.000_1071:1-1071(+)\n+TSSNEQCRCKMSDDGSNTPNTPVPNGPVPASAQDPASTETTPVPNGPVPPPAPGPVPSLL\n+PPRPQEPAAADCCGQGCTPCVYDLYDQEVALWAAECDRIRRGQSTVSGPAQEVLSVDRYR\n+QLQLTEVERLTPDASRYTFAIPGYQCLPMSLAQHLVMRWQTQEKTVTRQYTPTTLPTTRG\n+TVEFIIKLYPDGEISRYIRTWEVGQLVDWRGPFGNFSYKPNSYKRLVMLAAGTGLTPMAQ\n+VIQHVLDNEADETWLHLVYCCPDHSAILCRAALADWVCFWNFSLTLFLSRDSSDRSPACQ\n+FGEQSMYGRLTEAAVRERFGAEMDQTLFLVCGTKAFEKDVIAYLRALGVGEHNCFKF\n+>Gene.79::As88_1/1_1.000_375::g.79::m.79 Gene.79::As88_1/1_1.000_375::g.79 ORF type:internal len:126 (+) As88_1/1_1.000_375:1-375(+)\n+QYSIPRWLISSKMLLNYMLVGWLISSPGSGHEVGSGDRMSRSPLKVHKHGNGMQQIPRVS\n+IATSNCRVYTVECIQLLCESFDIHVSIGLPYYLTCLHICTSRLNWYSRRNSTDSRDRCCF\n+LPPGL\n+>Gene.80::As89_1/1_1.000_1617::g.80::m.80 Gene.80::As89_1/1_1.000_1617::g.80 ORF type:internal len:540 (+) As89_1/1_1.000_1617:1-1617(+)\n+SADRERASMDEDELLLPSSDEDDTDDSDDDVDDPVAPAEICNLLESKLAETGNNQVLFTG\n+FLDVFKRVQPRLLPLLDEVFCEAVTRTNHGLVCALLTNFHKEINVNHRSLSVPDGGTPLT\n+SAARVRHPHLVQTLLEHGARLGARTRSGETALDVSCSVGDVACVDVLLQRILTHWVEESG\n+ARNELLYNGQVTAAYNGHDEVLRRFVAEGVDVNLNLDDELGTPLHRCIEGGSIECTDIVL\n+NAGADVEALRTNVQQTPLMCAAEFGHVNILARLLGRGAKIDRMTDECSSALNMACHYGHT\n+ACVKYLLACGANPQVRNPWGFTPLFMGADTLEIVQVLINTAVDLDEKCGERGEAAIHLAS\n+VVGSVETVRLLLDKGSDLNVKTYHQETPLWLAAWKGHVDVCRLLVQRNCTLDDASNGCQV\n+YAYDYMPVEIAMGLGHMDIMRMLVLAGCSLCNGRYFKDDDPGVLEEISWVKLRPEPMHIK\n+LSHVTDYEWFHHFVTNPRSLKHACRLKLRGVLSSSLEHKVSELGLPTKLVDYLIFSDLF\n+>Gene.83::As90_1/1_1.000_729::g.83::m.83 Gene.83::As90_1/1_1.000_729::g.83 ORF type:internal len:244 (+) As90_1/1_1.000_729:1-729(+)\n+AFINEHIKLTIQFQVKADSYATALLLVQFDILPLRPTLINHTGEMDTTGTPLTEDEDTVA\n+CNCNPPSAGNILCSARPTSSDDDVLNNVEYDNDSDKDDNGNTDNEKISNHENLEEHIIHI\n+QVKGSSFDRFQPALKKARELLAKQENICLELICEPSNIKDKNAVKVQCIIDGECQQVGYV\n+GVENLPRVHAVLRSKSIKLVNFVWIRRKYVAVINGFILHACISVKKSGTWLPCKLSNTYN\n+SVI\n+>Gene.84::As91_1/1_1.000_366::g.84::m.84 Gene.84::As91_1/1_1.000_366::g.84 ORF type:internal len:123 (+) As91_1/1_1.000_366:1-366(+)\n+NKVRGNWSHQIEFTLSCIGYSVGLGNIWRFPYLCMRNGGGAFLIPYFTFLFVCGMPLFFM\n+ELVLGQFSGIGLTLVWKLCPIMKGIGWTSLIMSFIWLVNYNIILSWTVYYLGMSCASDVP\n+WR\n+>Gene.86::As92_1/1_1.000_609::g.86::m.86 Gene.86::As92_1/1_1.000_609::g.86 ORF type:internal len:204 (+) As92_1/1_1.000_609:1-609(+)\n+GTQQVIKNSISLKGSTELVSEFFLYGINSILYQRAIYPAETFQRVQKYGLTVLTTTDPEL\n+QKYLQDVVSQVEDWLMKKTIQKLVLVIKSLENSEVLERWQFDVECTKKTENSAPTTQTSM\n+SAINKEIQSVIRQITASVTFLPLIECACAFDILVYTDKELNVPEAWGESGPAVIANSQEV\n+RLRPFSTTIHKVDTMVSYKAVIE\n+>Gene.88::As93_1/1_1.000_510::g.88::m.88 Gene.88::As93_1/1_1.000_510::g.88 ORF type:internal len:171 (+) As93_1/1_1.000_510:1-510(+)\n+WHPSSYFALGFTLQRGSSRWKFFEMMDEPSSMIMTTAYEVMRRPTLPRWKSLDRQAADGA\n+TASMSARILTLETGRGKTIALADGRSTYSECEVPYRSYTGAVSTRRNSSPFPTWTHLDEK\n+EDMGLVVTTVCPPSASVVRDCYYSVGEDFNLYDRSHPPVIFYTGGPTASA\n+>Gene.90::As95_1/1_1.000_729::g.90::m.90 Gene.90::As95_1/1_1.000_729::g.90 ORF type:internal len:244 (+) As95_1/1_1.000_729:1-729(+)\n+VQYPKIAVGLQTIPQASLLSHLIGDPTLTLYIIAAHTHYKMPRGRGKRGSHKGGHRKFTN\n+AEELKQQQSKQEKEKEWRKMKGLPSDESGDEDEEGGAKAAAKKTEDAEEDVKFGDSSSEE\n+ESSEEEEDAKAKGVSHLIEIANPNHQVTKSSKKVTEISGDAKVNLSRREKEELAKQQAKV\n+QYQKMHLEGKTDEARSDLARLALIRKQREDAAKKKDEERKQREAAAAEAEQKLKDKRAAA\n+RGQ\n+>Gene.92::As97_1/1_1.000_378::g.92::m.92 Gene.92::As97_1/1_1.000_378::g.92 ORF type:internal len:127 (-) As97_1/1_1.000_378:1-378(-)\n+APPTTKPTTKAPTPPPMAPPTPCQSTPCQKGTCLDDGDNYKCMCLPGYTGRNCESEIPDT\n+TTTTTTTTTKPPTTTPFDDCKSTPCIHGTCVDIGDGYMCQCDAGYTGTNCDEKVNDCDPN\n+PCVHGS\n+>Gene.93::As99_1/1_1.000_396::g.93::m.93 Gene.93::As99_1/1_1.000_396::g.93 ORF type:internal len:133 (+) As99_1/1_1.000_396:1-396(+)\n+QIDETESQRKSERESEQMEKGKEIQDQLHGNLKNLNKEEAFERETLIQLINDIASAHVSA\n+ASHTIKGNIVGTLEDLDFMLQKTAVPRPAQLGPPPRYKSKTPLAGGKRPPSTKAPKSGKA\n+RAQSGAKSAKGK\n' |