| Previous changeset 32:117639df067a (2012-12-03) |
|
Commit message:
Uploaded |
|
added:
README.txt |
| b |
| diff -r 117639df067a -r 91a4092971bc README.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README.txt Mon Dec 03 03:10:42 2012 -0500 |
| b |
| @@ -0,0 +1,17 @@ +BSMAP 2.6 Wrapper +Written by Eugen Eirich @ Institute of Molecular Biology Mainz +Contact: e.eirich@imb-mainz.de + +1. Dependencies +To use the wrapper, please install BSMAP 2.6 and the Samtools package manually to your dependencies directory. + +2. Reference genomes +You can either use reference genomes from your history or built-in genomes. The built-in genomes are specified +in the file "bsmap_fasta.loc" in your tool-data directory. + +3. WIG parser +There is a WIG parser included in the repo, which converts the BSMAP Methylation Caller ouptut into WIG format. +To use this parser, please first path the file "methratio.py" in your BSMAP directory with the included file +"methratio.patch": + +/path/to/bsmap/methratio.py < methratio.patch \ No newline at end of file |