| Previous changeset 1:ca1320644fad (2018-04-18) Next changeset 3:ca86af119c27 (2019-12-25) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 513a54a013c5762aa6099fe044b2d3acf4a76881 |
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modified:
coords2clnt.xml |
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| diff -r ca1320644fad -r 91f27e8a2535 coords2clnt.xml --- a/coords2clnt.xml Wed Apr 18 04:05:16 2018 -0400 +++ b/coords2clnt.xml Tue Jul 10 13:50:10 2018 -0400 |
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| @@ -1,4 +1,4 @@ -<tool id="bctools_extract_crosslinked_nucleotides" name="Get crosslinked nucleotides" version="@VERSION@"> +<tool id="bctools_extract_crosslinked_nucleotides" name="Get crosslinked nucleotides" version="@VERSION+galaxy1"> <description>from full alignments</description> <macros> <import>macros.xml</import> @@ -6,11 +6,15 @@ <expand macro="requirements"/> <command detect_errors="exit_code"><![CDATA[ coords2clnt.py + $threeprime '$alignment_coordinates' > '$crosslinking_coordinates' ]]></command> <inputs> <param name="alignment_coordinates" type="data" format="bed" label="Alignments in BED format"/> + <param argument="--threeprime" type="boolean" truevalue="--threeprime" falsevalue="" checked="false" + label="Set position one nt downstream of 3'-end as crosslinked nucleotide" + help="Set position one nt downstream of 3'-end as crosslinked nucleotide. By default the crosslink site will be assumed to be one nt upstream of the 5'-end of the read."/> </inputs> <outputs> <data name="crosslinking_coordinates" format="bed"/> |