| Previous changeset 90:c82bc3b424c9 (2017-01-18) Next changeset 92:e5efc103119a (2017-01-18) |
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modified:
mda_heatmap_gen_toolshed.xml |
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| diff -r c82bc3b424c9 -r 92252b9aab46 mda_heatmap_gen_toolshed.xml --- a/mda_heatmap_gen_toolshed.xml Wed Jan 18 11:08:20 2017 -0500 +++ b/mda_heatmap_gen_toolshed.xml Wed Jan 18 11:31:14 2017 -0500 |
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| @@ -1,7 +1,7 @@ <?xml version="1.0" encoding="UTF-8" ?> <tool id="mda_heatmap_gen_toolshed" name="NG-CHM Generator" version="5.6.7"> <description>Create Clustered Heat Maps</description> -<command interpreter="bash" detect_errors="aggressive">$GALAXY_ROOT_DIR/../shed_tools/toolshed.g2.bx.psu.edu/repos/insilico-bob/ngchm/*/ngchm/MDAheatmap/ngchm-software/heatmap.sh '$hmname' '$hmdesc' '$inputmatrix' ${discrete_rows.rowOrderMethod} ${discrete_cols.rowDistanceMeasure} $rowAgglomerationMethod $columnOrderMethod $columnDistanceMeasure $columnAgglomerationMethod '$summarymethod' $rowDendroCut $colDendroCut '$__tool_directory__' +<command interpreter="bash" detect_errors="aggressive">$GALAXY_ROOT_DIR/../shed_tools/toolshed.g2.bx.psu.edu/repos/insilico-bob/ngchm/*/ngchm/MDAheatmap/ngchm-software/heatmap.sh '$hmname' '$hmdesc' '$inputmatrix' ${d_rows.rowOrderMethod} ${d_rows.rowDistanceMeasure} ${d_rows.rowAgglomerationMethod} ${d_cols.columnOrderMethod} ${d_cols.columnDistanceMeasure} ${d_cols.columnAgglomerationMethod} '$summarymethod' ${d_rows.rowDendroCut} ${d_cols.colDendroCut} '$__tool_directory__' #for $op in $operations ${op.class_name} ${op.repeatinput.file_name} @@ -21,7 +21,7 @@ <option value="sample">sample</option> <option value="mode">mode</option> </param> - <conditional name="discrete_rows"> + <conditional name="d_rows"> <param name="rowOrderMethod" type="select" label="Row ordering method" help="Choices -- Hierarchical Clustering, Original Order, Random"> <option value="Hierarchical">Hierarchical Clustering</option> <option value="Original">Original Order</option> @@ -60,7 +60,7 @@ </param> </when> </conditional> - <conditional name="discrete_cols"> + <conditional name="d_cols"> <param name="columnOrderMethod" type="select" label="Column ordering method" help="Choices -- Hierarchical Clustering, Original Order, Random"> <option value="Hierarchical">Hierarchical Clustering</option> <option value="Original">Original Order</option> |