| Previous changeset 6:153ed20b5aab (2019-04-27) Next changeset 8:ff1ff59af83c (2019-04-27) |
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scoring function/KinatestScoring.xml |
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| diff -r 153ed20b5aab -r 9243cdb86997 scoring function/KinatestScoring.xml --- a/scoring function/KinatestScoring.xml Sat Apr 27 16:09:28 2019 -0400 +++ b/scoring function/KinatestScoring.xml Sat Apr 27 16:14:55 2019 -0400 |
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| @@ -7,24 +7,24 @@ ln -s '$__tool_directory__/screener.csv' screener.csv && ln -s '$FisherTable' Fisher-Char.csv && ln -s '$CharacterizationTable' Fisher-Table.csv && - Rscript '$__tool_directory__/KinatestFisherScoring.R' outGroup M6 M5 M4 M3 M2 M1 D0 P1 P2 P3 P4 P5 P6 + Rscript '$__tool_directory__/KinatestFisherScoring.R' outGroup Ms Mfi Mfo Mth Mtw Mo Dz Po Ptw Pth Pfo Pfi Ps ]]></command> <inputs> <param format="csv" name="FisherTable" type="data" label="Fisher Odds Table output"/> <param format="csv" name="CharacterizationTable" type="data" label="Characterization Table Output"/> - <param name="M6" type="text" value="ACD" label="Amino Acid(s) in -6 Position"/> - <param name="M5" type="text" value="EFG" label="Amino Acid(s) in -5 Position"/> - <param name="M4" type="text" value="HIK" label="Amino Acid(s) in -4 Position"/> - <param name="M3" type="text" value="LMN" label="Amino Acid(s) in -3 Position"/> - <param name="M2" type="text" value="PQR" label="Amino Acid(s) in -2 Position"/> - <param name="M1" type="text" value="STV" label="Amino Acid(s) in -1 Position"/> - <param name="D0" type="text" value="Y" label="Amino Acid(s) in Central Position"/> - <param name="P1" type="text" value="VTS" label="Amino Acid(s) in +1 Position"/> - <param name="P2" type="text" value="RQP" label="Amino Acid(s) in +2 Position"/> - <param name="P3" type="text" value="NML" label="Amino Acid(s) in +3 Position"/> - <param name="P4" type="text" value="KIH" label="Amino Acid(s) in +4 Position"/> - <param name="P5" type="text" value="GFE" label="Amino Acid(s) in +5 Position"/> - <param name="P6" type="text" value="DCA" label="Amino Acid(s) in +6 Position"/> + <param name="Ms" type="text" value="ACD" label="Amino Acid(s) in -6 Position"/> + <param name="Mfi" type="text" value="EFG" label="Amino Acid(s) in -5 Position"/> + <param name="Mfo" type="text" value="HIK" label="Amino Acid(s) in -4 Position"/> + <param name="Mth" type="text" value="LMN" label="Amino Acid(s) in -3 Position"/> + <param name="Mtw" type="text" value="PQR" label="Amino Acid(s) in -2 Position"/> + <param name="Mo" type="text" value="STV" label="Amino Acid(s) in -1 Position"/> + <param name="Dz" type="text" value="Y" label="Amino Acid(s) in Central Position"/> + <param name="Po" type="text" value="VTS" label="Amino Acid(s) in +1 Position"/> + <param name="Ptw" type="text" value="RQP" label="Amino Acid(s) in +2 Position"/> + <param name="Pth" type="text" value="NML" label="Amino Acid(s) in +3 Position"/> + <param name="Pfo" type="text" value="KIH" label="Amino Acid(s) in +4 Position"/> + <param name="Pf" type="text" value="GFE" label="Amino Acid(s) in +5 Position"/> + <param name="Ps" type="text" value="DCA" label="Amino Acid(s) in +6 Position"/> <param name="outGroup" type="text" value="kinase" label="Kinase Name"/> </inputs> <outputs> |