| Previous changeset 9:878f6725c4f3 (2020-01-09) |
|
Commit message:
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/flashlfq commit a72ed1b1e61e0f948dc36b220d2746dc6f06bccf" |
|
modified:
flashlfq.xml |
| b |
| diff -r 878f6725c4f3 -r 92c059f90d0e flashlfq.xml --- a/flashlfq.xml Thu Jan 09 02:52:23 2020 -0500 +++ b/flashlfq.xml Tue Apr 07 05:32:03 2020 -0400 |
| [ |
| @@ -1,9 +1,12 @@ -<tool id="flashlfq" name="FlashLFQ" version="1.0.3.0"> +<tool id="flashlfq" name="FlashLFQ" version="1.0.3.1"> <description>ultrafast label-free quantification for mass-spectrometry proteomics</description> <requirements> <requirement type="package" version="1.0.3">flashlfq</requirement> </requirements> - <command><![CDATA[ + <stdio> + <regex match="Problem opening .mzML file" level="fatal" source="stdout" description="Proplem opening mzML file." /> + </stdio> + <command detect_errors="exit_code"><![CDATA[ #import re #set $idt_path = $re.sub('\s','_',$re.sub('[.][^.]*$','',$idt.display_name.split('/')[-1])) + ".psmtsv" ln -s '${idt}' '${idt_path}' && @@ -45,7 +48,7 @@ #end if #end if #end if - --out out > logfile.txt + --out out | tee logfile.txt ]]></command> <inputs> <param argument="--idt" type="data" format="tabular" label="identification file" |