Repository 'idr_download_by_ids'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/idr_download_by_ids

Changeset 1:9340cbc7796c (2020-03-24)
Previous changeset 0:57aa9597cd31 (2020-02-08) Next changeset 2:17b1cd0f4812 (2020-04-14)
Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idr_download commit c496b34c7f6265cccd9326fd239542d9e625c1a4"
modified:
idr_download_by_ids.py
idr_download_by_ids.xml
b
diff -r 57aa9597cd31 -r 9340cbc7796c idr_download_by_ids.py
--- a/idr_download_by_ids.py Sat Feb 08 13:24:39 2020 -0500
+++ b/idr_download_by_ids.py Tue Mar 24 13:48:46 2020 -0400
[
@@ -189,7 +189,7 @@
                     )
 
             # download and save the region as TIFF
-            fname = '_'.join(
+            fname = '__'.join(
                 [image_name, str(image_id)] + [str(x) for x in tile]
             )
             download_plane_as_tiff(image, tile, z_stack, channel_index, frame, fname)
b
diff -r 57aa9597cd31 -r 9340cbc7796c idr_download_by_ids.xml
--- a/idr_download_by_ids.xml Sat Feb 08 13:24:39 2020 -0500
+++ b/idr_download_by_ids.xml Tue Mar 24 13:48:46 2020 -0400
b
@@ -1,5 +1,5 @@
 <?xml version="1.0"?>
-<tool id="idr_download_by_ids" name="IDR Download" version="0.9" profile="18.09">
+<tool id="idr_download_by_ids" name="IDR Download" version="0.10" profile="18.09">
     <description>- download images from the Image Data Resource using image IDs</description>
     <macros>
         <xml name="region_spec" token_pos="upper-left corner">
@@ -107,7 +107,7 @@
             </conditional>
             <param name="frame" value="2" />
             <output_collection name="output_file" type="list">
-                <element name="Centrin_PCNT_Cep215_20110506_Fri-1545_0_SIR_PRJ_1884807_3_3_5_5" file="test1.tiff"/>
+                <element name="Centrin_PCNT_Cep215_20110506_Fri-1545_0_SIR_PRJ__1884807__3__3__5__5" file="test1.tiff"/>
             </output_collection>
         </test>
         <test>
@@ -123,7 +123,7 @@
             </conditional>
             <param name="frame" value="2" />
             <output_collection name="output_file" type="list">
-                <element name="Centrin_PCNT_Cep215_20110506_Fri-1545_0_SIR_PRJ_1884807_3_3_5_5" file="test1.tiff"/>
+                <element name="Centrin_PCNT_Cep215_20110506_Fri-1545_0_SIR_PRJ__1884807__3__3__5__5" file="test1.tiff"/>
             </output_collection>
         </test>
         <test>
@@ -139,7 +139,7 @@
             </conditional>
             <param name="frame" value="2" />
             <output_collection name="output_file" type="list">
-                <element name="Centrin_PCNT_Cep215_20110506_Fri-1545_0_SIR_PRJ_1884807_3_3_5_5" file="test1.tiff"/>
+                <element name="Centrin_PCNT_Cep215_20110506_Fri-1545_0_SIR_PRJ__1884807__3__3__5__5" file="test1.tiff"/>
             </output_collection>
         </test>
         <test>
@@ -152,7 +152,7 @@
             </conditional>
             <param name="frame" value="20" />
             <output_collection name="output_file" type="list" count="3">
-                <element name="171101_LeadingEdgeDeletionPSMMovies01_15_R3D_9036711_0_0_1024_1024">
+                <element name="171101_LeadingEdgeDeletionPSMMovies01_15_R3D__9036711__0__0__1024__1024">
                     <assert_contents>
                         <has_size value="4194510" />
                     </assert_contents>
@@ -189,7 +189,7 @@
             <param name="frame" value="20" />
             <param name="skip_failed" value="true" />
             <output_collection name="output_file" type="list" count="2">
-                <element name="171101_LeadingEdgeDeletionPSMMovies01_15_R3D_9036711_0_0_1024_1024">
+                <element name="171101_LeadingEdgeDeletionPSMMovies01_15_R3D__9036711__0__0__1024__1024">
                     <assert_contents>
                         <has_size value="4194510" />
                     </assert_contents>