| Previous changeset 11:fb9e030ffae4 (2022-06-22) Next changeset 13:d330b3082107 (2024-09-14) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/anndata/ commit 656ce7ff596a8870b77848469e85b406c7bd9344 |
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modified:
import.xml macros.xml test-data/addloomout1.loom test-data/addloomout2.loom test-data/addloomout3.loom test-data/converted.loom.test test-data/export.krumsiek11.X.tabular test-data/export.krumsiek11.loom test-data/export.krumsiek11.obs.tabular test-data/export.krumsiek11.obsm.tabular test-data/export.krumsiek11.var.tabular test-data/import.csv.h5ad test-data/import.loom.krumsiek11.h5ad test-data/import.mtx.legacy_10x.h5ad test-data/import.mtx.no_10x.h5ad test-data/import.mtx.v3_10x.h5ad test-data/import.tsv.h5ad test-data/import.umi_tools.h5ad test-data/inspect.X.tabular test-data/inspect.general.txt test-data/inspect.obs.tabular test-data/inspect.var.tabular test-data/krumsiek11.h5ad test-data/krumsiek11.loom test-data/manipulate.add_annotation_obs.h5ad test-data/manipulate.add_annotation_var.h5ad test-data/manipulate.concatenate.h5ad test-data/manipulate.filter_obs_key.h5ad test-data/manipulate.filter_var_index.h5ad test-data/manipulate.obs_names_make_unique.h5ad test-data/manipulate.rename_categories.h5ad test-data/manipulate.save_raw.h5ad test-data/manipulate.strings_to_categoricals.h5ad test-data/manipulate.transpose.h5ad test-data/manipulate.var_names_make_unique.h5ad test-data/obs_add_annotation.tabular test-data/pp.neighbors_umap_euclidean.recipe_weinreb17.paul15_subsample.h5ad test-data/pp.pca.krumsiek11.h5ad test-data/tl.paga.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsample.h5ad test-data/tl.rank_genes_groups.krumsiek11.h5ad |
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| diff -r fb9e030ffae4 -r 93dd15e13e6a import.xml --- a/import.xml Wed Jun 22 07:21:48 2022 +0000 +++ b/import.xml Sun Nov 12 16:42:57 2023 +0000 |
| [ |
| @@ -13,7 +13,7 @@ </xml> </macros> <expand macro="requirements"> - <requirement type="package" version="1.7.0">scanpy</requirement> + <requirement type="package" version="1.9.6">scanpy</requirement> </expand> <expand macro="version_command"/> <command detect_errors="exit_code"><![CDATA[ @@ -229,7 +229,7 @@ </conditional> <output name="anndata" value="import.mtx.no_10x.h5ad" ftype="h5ad" compare="sim_size"/> </test> - <!--<test> + <test expect_num_outputs="1"> <conditional name="in"> <param name="adata_format" value="mtx"/> <param name="matrix" value="matrix_10x_v1.2.0.mtx"/> @@ -244,7 +244,7 @@ </conditional> <output name="anndata" value="import.mtx.legacy_10x.h5ad" ftype="h5ad" compare="sim_size"/> </test> - <test> + <test expect_num_outputs="1"> <conditional name="in"> <param name="adata_format" value="mtx"/> <param name="matrix" value="matrix_10x_v3.0.0.mtx"/> @@ -258,7 +258,7 @@ </conditional> </conditional> <output name="anndata" value="import.mtx.v3_10x.h5ad" ftype="h5ad" compare="sim_size"/> - </test>!--> + </test> <test expect_num_outputs="1"> <param name="filetype" value="anndata"/> <conditional name="in"> |
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| diff -r fb9e030ffae4 -r 93dd15e13e6a macros.xml --- a/macros.xml Wed Jun 22 07:21:48 2022 +0000 +++ b/macros.xml Sun Nov 12 16:42:57 2023 +0000 |
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| @@ -1,10 +1,10 @@ <macros> - <token name="@TOOL_VERSION@">0.7.5</token> - <token name="@VERSION_SUFFIX@">1</token> + <token name="@TOOL_VERSION@">0.10.3</token> + <token name="@VERSION_SUFFIX@">0</token> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">anndata</requirement> - <requirement type="package" version="2.0.17">loompy</requirement> + <requirement type="package" version="3.0.6">loompy</requirement> <yield /> </requirements> </xml> |
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| diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/addloomout1.loom |
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| Binary file test-data/addloomout1.loom has changed |
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| diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/addloomout2.loom |
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| Binary file test-data/addloomout2.loom has changed |
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| diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/addloomout3.loom |
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| Binary file test-data/addloomout3.loom has changed |
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| diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/converted.loom.test |
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| Binary file test-data/converted.loom.test has changed |
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| diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/export.krumsiek11.X.tabular --- a/test-data/export.krumsiek11.X.tabular Wed Jun 22 07:21:48 2022 +0000 +++ b/test-data/export.krumsiek11.X.tabular Sun Nov 12 16:42:57 2023 +0000 |
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| b'@@ -498,143 +498,3 @@\n 0.1857\t0.0587\t-0.0003\t0.0087\t0.0084\t0.0221\t0.9613\t0.2272\t0.1058\t0.0298\t0.276\n 0.177\t0.0645\t0.0011\t0.009\t0.006\t0.0222\t0.9653\t0.2208\t0.1063\t0.0291\t0.2785\n 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t0.9401\n-0.0018\t-0.0049\t1e-04\t0.001\t0.0\t0.0044\t1.0066\t1.0055\t0.0204\t-0.0021\t0.9432\n--0.0\t-0.0055\t-0.0014\t-0.0013\t-0.0025\t0.002\t1.0021\t1.0051\t0.0189\t-0.0044\t0.9453\n--0.0035\t-0.004\t-0.0032\t-0.0007\t-0.0018\t-0.0\t1.0024\t1.0047\t0.0187\t-0.0066\t0.9389\n--0.0071\t-0.0056\t-0.0025\t0.0002\t-0.002\t-0.004\t1.0032\t1.0047\t0.0155\t-0.0102\t0.9278\n--0.0053\t-0.0073\t-0.0031\t0.0033\t0.0006\t-0.0011\t1.0012\t1.0025\t0.0137\t-0.0045\t0.9215\n--0.001\t-0.0068\t-0.0031\t0.0045\t-0.0015\t-0.0032\t0.9998\t1.0044\t0.0113\t-0.0052\t0.9236\n--0.0017\t-0.0023\t-0.0046\t0.0052\t0.0033\t-0.0023\t0.9987\t1.0078\t0.0105\t-0.007\t0.9217\n--0.0025\t0.0006\t-1e-04\t0.0069\t0.0048\t-0.0008\t0.9951\t1.005\t0.0144\t-0.0072\t0.9174\n--0.0014\t0.0029\t-0.0026\t0.0083\t0.003\t0.0\t0.9967\t1.0052\t0.013\t-0.0051\t0.9144\n-1e-04\t0.0038\t-0.0015\t0.0065\t0.0026\t0.0015\t0.9945\t1.0036\t0.0144\t-0.003\t0.9207\n-0.0019\t0.002\t0.0014\t0.0059\t0.0048\t0.0008\t0.9966\t1.007\t0.0151\t-0.0008\t0.9236\n-0.0013\t0.0018\t-0.0016\t0.0077\t0.0045\t-0.0\t0.9966\t1.0074\t0.0135\t-0.0022\t0.9318\n-0.0014\t-0.0\t-0.0017\t0.006\t0.0053\t0.0002\t0.989\t1.0061\t0.014\t-0.0034\t0.9351\n-0.0012\t0.0023\t0.0008\t0.0046\t0.0053\t0.0032\t0.9867\t1.0054\t0.0131\t-0.0067\t0.938\n-0.0045\t0.0011\t0.0021\t0.0024\t0.007\t0.0006\t0.9872\t1.004\t0.0125\t-0.0076\t0.9325\n-0.0077\t0.0017\t0.0034\t0.0055\t0.0049\t-0.001\t0.9914\t1.0053\t0.0113\t-0.0099\t0.92\n-0.0061\t-0.0006\t0.0036\t0.0096\t0.0063\t-0.0023\t0.9914\t1.0067\t0.0126\t-0.0062\t0.9187\n-0.0046\t-0.0029\t0.0047\t0.0083\t0.0047\t-0.0058\t0.9915\t1.0034\t0.0144\t-0.0047\t0.9198\n-0.0025\t-0.002\t0.0026\t0.0064\t0.0047\t-0.0078\t0.9926\t1.003\t0.0153\t-0.0054\t0.9198\n--0.0023\t-0.0027\t0.0013\t0.0059\t0.0014\t-0.0077\t0.9938\t1.0012\t0.0143\t-0.0046\t0.9246\n-0.0004\t-0.0045\t0.0011\t0.0046\t0.0035\t-0.0082\t0.9927\t1.0007\t0.0133\t-0.0049\t0.9222\n--0.0006\t-0.0044\t0.001\t0.0071\t0.0049\t-0.0112\t0.9953\t1.0034\t0.0123\t-0.0061\t0.9246\n--0.0025\t-0.0051\t-0.0003\t0.0076\t0.003\t-0.0067\t0.9932\t1.0029\t0.014\t-0.0055\t0.9267\n--0.0038\t-0.0068\t0.0007\t0.0066\t-0.0003\t-0.0066\t0.9921\t1.0051\t0.013\t-0.0046\t0.9243\n--0.0023\t-0.0119\t0.0046\t0.0063\t0.0037\t-0.0059\t0.9913\t1.004\t0.0146\t-0.0022\t0.9326\n--0.0034\t-0.0117\t0.002\t0.0028\t0.003\t-0.0026\t0.9923\t1.0021\t0.0158\t-0.0021\t0.9364\n--0.0047\t-0.0134\t0.0031\t0.0018\t0.0046\t-0.0006\t0.9908\t0.9996\t0.0136\t-0.0015\t0.9376\n--0.0035\t-0.0163\t0.0017\t0.0016\t0.0035\t-0.0008\t0.9938\t0.9976\t0.013\t0.0009\t0.9446\n--0.002\t-0.0149\t-0.0009\t0.0021\t0.0013\t-0.0018\t0.9938\t0.9941\t0.015\t-0.0055\t0.9497\n--0.0036\t-0.0151\t0.0024\t-0.0013\t0.0012\t0.0004\t0.9976\t0.9917\t0.0123\t-0.0032\t0.9441\n--0.0032\t-0.0116\t0.001\t0.0008\t-0.0024\t0.0006\t1.001\t0.9934\t0.0108\t-0.0065\t0.9492\n--0.0023\t-0.0083\t0.0027\t0.0005\t0.0006\t-0.0014\t1.0014\t0.9927\t0.0136\t-0.0067\t0.94\n--0.001\t-0.006\t0.0022\t0.0034\t-0.0011\t-0.0018\t0.9997\t0.9933\t0.0132\t-0.0049\t0.9404\n--0.0024\t-0.0073\t-0.0011\t0.0036\t-0.0024\t-0.0008\t0.9975\t0.9958\t0.0165\t-0.0064\t0.9398\n-0.0007\t-0.0051\t0.0008\t0.0036\t-0.003\t-0.0012\t1.0006\t0.9932\t0.0161\t-0.0076\t0.9372\n--0.0008\t-0.0076\t0.0025\t0.0028\t-0.0048\t-0.0003\t1.0016\t0.992\t0.015\t-0.0095\t0.9325\n--0.0029\t-0.0045\t0.0027\t0.0051\t-0.0046\t-0.0039\t0.9989\t0.9913\t0.0177\t-0.0087\t0.9232\n-0.0002\t-0.002\t0.0061\t0.0048\t-0.0043\t-0.0016\t0.9989\t0.9911\t0.0152\t-0.0072\t0.916\n--0.001\t-0.002\t0.0015\t0.0029\t-0.0055\t-0.0004\t0.999\t0.9915\t0.0107\t-0.0076\t0.9119\n-0.0028\t-0.003\t0.0009\t0.0049\t-0.0073\t0.002\t1.0\t0.9946\t0.0127\t-0.0082\t0.9095\n-0.003\t-0.0035\t0.0008\t0.0052\t-0.0066\t1e-04\t1.0014\t0.9977\t0.0125\t-0.0046\t0.9069\n-0.0063\t-0.0023\t-0.0005\t0.0081\t-0.0046\t-0.0006\t0.9983\t0.997\t0.0109\t-0.003\t0.9118\n-0.0049\t0.0002\t-0.0013\t0.0054\t-0.0036\t0.0009\t1.0011\t0.9967\t0.0066\t-0.0033\t0.9177\n' 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| diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/export.krumsiek11.obs.tabular --- a/test-data/export.krumsiek11.obs.tabular Wed Jun 22 07:21:48 2022 +0000 +++ b/test-data/export.krumsiek11.obs.tabular Sun Nov 12 16:42:57 2023 +0000 |
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| @@ -1,4 +1,4 @@ -index cell_type + cell_type 0 progenitor 1 progenitor 2 progenitor @@ -499,143 +499,3 @@ 17 progenitor 18 progenitor 19 progenitor -20 progenitor -21 progenitor -22 progenitor -23 progenitor -24 progenitor -25 progenitor -26 progenitor -27 progenitor -28 progenitor -29 progenitor -30 progenitor -31 progenitor -32 progenitor -33 progenitor -34 progenitor -35 progenitor -36 progenitor -37 progenitor -38 progenitor -39 progenitor -40 progenitor -41 progenitor -42 progenitor -43 progenitor -44 progenitor -45 progenitor -46 progenitor -47 progenitor -48 progenitor -49 progenitor -50 progenitor -51 progenitor -52 progenitor -53 progenitor -54 progenitor -55 progenitor -56 progenitor -57 progenitor -58 progenitor -59 progenitor -60 progenitor -61 progenitor -62 progenitor -63 progenitor -64 progenitor -65 progenitor -66 progenitor -67 progenitor -68 progenitor -69 progenitor -70 progenitor -71 progenitor -72 progenitor -73 progenitor -74 progenitor -75 progenitor -76 progenitor -77 progenitor -78 progenitor -79 progenitor -80 Neu -81 Neu -82 Neu -83 Neu -84 Neu -85 Neu -86 Neu -87 Neu -88 Neu -89 Neu -90 Neu -91 Neu -92 Neu -93 Neu -94 Neu -95 Neu -96 Neu -97 Neu -98 Neu -99 Neu -100 Neu -101 Neu -102 Neu -103 Neu -104 Neu -105 Neu -106 Neu -107 Neu -108 Neu -109 Neu -110 Neu -111 Neu -112 Neu -113 Neu -114 Neu -115 Neu -116 Neu -117 Neu -118 Neu -119 Neu -120 Neu -121 Neu -122 Neu -123 Neu -124 Neu -125 Neu -126 Neu -127 Neu -128 Neu -129 Neu -130 Neu -131 Neu -132 Neu -133 Neu -134 Neu -135 Neu -136 Neu -137 Neu -138 Neu -139 Neu -140 Neu -141 Neu -142 Neu -143 Neu -144 Neu -145 Neu -146 Neu -147 Neu -148 Neu -149 Neu -150 Neu -151 Neu -152 Neu -153 Neu -154 Neu -155 Neu -156 Neu -157 Neu -158 Neu -159 Neu |
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| diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/export.krumsiek11.obsm.tabular --- a/test-data/export.krumsiek11.obsm.tabular Wed Jun 22 07:21:48 2022 +0000 +++ b/test-data/export.krumsiek11.obsm.tabular Sun Nov 12 16:42:57 2023 +0000 |
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| @@ -499,143 +499,3 @@ - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - |
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| diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/export.krumsiek11.var.tabular --- a/test-data/export.krumsiek11.var.tabular Wed Jun 22 07:21:48 2022 +0000 +++ b/test-data/export.krumsiek11.var.tabular Sun Nov 12 16:42:57 2023 +0000 |
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| @@ -1,4 +1,4 @@ -index +"" Gata2 Gata1 Fog1 |
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| diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/inspect.X.tabular --- a/test-data/inspect.X.tabular Wed Jun 22 07:21:48 2022 +0000 +++ b/test-data/inspect.X.tabular Sun Nov 12 16:42:57 2023 +0000 |
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| b'@@ -1,4 +1,4 @@\n-index\tGata2\tGata1\tFog1\tEKLF\tFli1\tSCL\tCebpa\tPu.1\tcJun\tEgrNab\tGfi1\n+\tGata2\tGata1\tFog1\tEKLF\tFli1\tSCL\tCebpa\tPu.1\tcJun\tEgrNab\tGfi1\n 0\t0.8032\t-0.0005\t-1e-04\t0.0003\t0.0013\t0.0011\t0.7997\t0.8017\t0.0006\t0.0009\t0.0002\n 1\t0.7239\t0.0016\t-0.0003\t-0.001\t0.0011\t0.0022\t0.8195\t0.7256\t0.0784\t0.0077\t0.0941\n 2\t0.6578\t0.0013\t-0.001\t-0.0027\t0.0025\t0.0011\t0.8358\t0.6624\t0.1105\t0.0239\t0.1497\n@@ -499,143 +499,3 @@\n 17\t0.1857\t0.0587\t-0.0003\t0.0087\t0.0084\t0.0221\t0.9613\t0.2272\t0.1058\t0.0298\t0.276\n 18\t0.177\t0.0645\t0.0011\t0.009\t0.006\t0.0222\t0.9653\t0.2208\t0.1063\t0.0291\t0.2785\n 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46\t0.0052\t0.0033\t-0.0023\t0.9987\t1.0078\t0.0105\t-0.007\t0.9217\n-124\t-0.0025\t0.0006\t-1e-04\t0.0069\t0.0048\t-0.0008\t0.9951\t1.005\t0.0144\t-0.0072\t0.9174\n-125\t-0.0014\t0.0029\t-0.0026\t0.0083\t0.003\t0.0\t0.9967\t1.0052\t0.013\t-0.0051\t0.9144\n-126\t1e-04\t0.0038\t-0.0015\t0.0065\t0.0026\t0.0015\t0.9945\t1.0036\t0.0144\t-0.003\t0.9207\n-127\t0.0019\t0.002\t0.0014\t0.0059\t0.0048\t0.0008\t0.9966\t1.007\t0.0151\t-0.0008\t0.9236\n-128\t0.0013\t0.0018\t-0.0016\t0.0077\t0.0045\t-0.0\t0.9966\t1.0074\t0.0135\t-0.0022\t0.9318\n-129\t0.0014\t-0.0\t-0.0017\t0.006\t0.0053\t0.0002\t0.989\t1.0061\t0.014\t-0.0034\t0.9351\n-130\t0.0012\t0.0023\t0.0008\t0.0046\t0.0053\t0.0032\t0.9867\t1.0054\t0.0131\t-0.0067\t0.938\n-131\t0.0045\t0.0011\t0.0021\t0.0024\t0.007\t0.0006\t0.9872\t1.004\t0.0125\t-0.0076\t0.9325\n-132\t0.0077\t0.0017\t0.0034\t0.0055\t0.0049\t-0.001\t0.9914\t1.0053\t0.0113\t-0.0099\t0.92\n-133\t0.0061\t-0.0006\t0.0036\t0.0096\t0.0063\t-0.0023\t0.9914\t1.0067\t0.0126\t-0.0062\t0.9187\n-134\t0.0046\t-0.0029\t0.0047\t0.0083\t0.0047\t-0.0058\t0.9915\t1.0034\t0.0144\t-0.0047\t0.9198\n-135\t0.0025\t-0.002\t0.0026\t0.0064\t0.0047\t-0.0078\t0.9926\t1.003\t0.0153\t-0.0054\t0.9198\n-136\t-0.0023\t-0.0027\t0.0013\t0.0059\t0.0014\t-0.0077\t0.9938\t1.0012\t0.0143\t-0.0046\t0.9246\n-137\t0.0004\t-0.0045\t0.0011\t0.0046\t0.0035\t-0.0082\t0.9927\t1.0007\t0.0133\t-0.0049\t0.9222\n-138\t-0.0006\t-0.0044\t0.001\t0.0071\t0.0049\t-0.0112\t0.9953\t1.0034\t0.0123\t-0.0061\t0.9246\n-139\t-0.0025\t-0.0051\t-0.0003\t0.0076\t0.003\t-0.0067\t0.9932\t1.0029\t0.014\t-0.0055\t0.9267\n-140\t-0.0038\t-0.0068\t0.0007\t0.0066\t-0.0003\t-0.0066\t0.9921\t1.0051\t0.013\t-0.0046\t0.9243\n-141\t-0.0023\t-0.0119\t0.0046\t0.0063\t0.0037\t-0.0059\t0.9913\t1.004\t0.0146\t-0.0022\t0.9326\n-142\t-0.0034\t-0.0117\t0.002\t0.0028\t0.003\t-0.0026\t0.9923\t1.0021\t0.0158\t-0.0021\t0.9364\n-143\t-0.0047\t-0.0134\t0.0031\t0.0018\t0.0046\t-0.0006\t0.9908\t0.9996\t0.0136\t-0.0015\t0.9376\n-144\t-0.0035\t-0.0163\t0.0017\t0.0016\t0.0035\t-0.0008\t0.9938\t0.9976\t0.013\t0.0009\t0.9446\n-145\t-0.002\t-0.0149\t-0.0009\t0.0021\t0.0013\t-0.0018\t0.9938\t0.9941\t0.015\t-0.0055\t0.9497\n-146\t-0.0036\t-0.0151\t0.0024\t-0.0013\t0.0012\t0.0004\t0.9976\t0.9917\t0.0123\t-0.0032\t0.9441\n-147\t-0.0032\t-0.0116\t0.001\t0.0008\t-0.0024\t0.0006\t1.001\t0.9934\t0.0108\t-0.0065\t0.9492\n-148\t-0.0023\t-0.0083\t0.0027\t0.0005\t0.0006\t-0.0014\t1.0014\t0.9927\t0.0136\t-0.0067\t0.94\n-149\t-0.001\t-0.006\t0.0022\t0.0034\t-0.0011\t-0.0018\t0.9997\t0.9933\t0.0132\t-0.0049\t0.9404\n-150\t-0.0024\t-0.0073\t-0.0011\t0.0036\t-0.0024\t-0.0008\t0.9975\t0.9958\t0.0165\t-0.0064\t0.9398\n-151\t0.0007\t-0.0051\t0.0008\t0.0036\t-0.003\t-0.0012\t1.0006\t0.9932\t0.0161\t-0.0076\t0.9372\n-152\t-0.0008\t-0.0076\t0.0025\t0.0028\t-0.0048\t-0.0003\t1.0016\t0.992\t0.015\t-0.0095\t0.9325\n-153\t-0.0029\t-0.0045\t0.0027\t0.0051\t-0.0046\t-0.0039\t0.9989\t0.9913\t0.0177\t-0.0087\t0.9232\n-154\t0.0002\t-0.002\t0.0061\t0.0048\t-0.0043\t-0.0016\t0.9989\t0.9911\t0.0152\t-0.0072\t0.916\n-155\t-0.001\t-0.002\t0.0015\t0.0029\t-0.0055\t-0.0004\t0.999\t0.9915\t0.0107\t-0.0076\t0.9119\n-156\t0.0028\t-0.003\t0.0009\t0.0049\t-0.0073\t0.002\t1.0\t0.9946\t0.0127\t-0.0082\t0.9095\n-157\t0.003\t-0.0035\t0.0008\t0.0052\t-0.0066\t1e-04\t1.0014\t0.9977\t0.0125\t-0.0046\t0.9069\n-158\t0.0063\t-0.0023\t-0.0005\t0.0081\t-0.0046\t-0.0006\t0.9983\t0.997\t0.0109\t-0.003\t0.9118\n-159\t0.0049\t0.0002\t-0.0013\t0.0054\t-0.0036\t0.0009\t1.0011\t0.9967\t0.0066\t-0.0033\t0.9177\n' 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| diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/inspect.general.txt --- a/test-data/inspect.general.txt Wed Jun 22 07:21:48 2022 +0000 +++ b/test-data/inspect.general.txt Sun Nov 12 16:42:57 2023 +0000 |
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| @@ -1,3 +1,3 @@ -AnnData object with n_obs × n_vars = 640 × 11 +AnnData object with n_obs × n_vars = 500 × 11 obs: 'cell_type' - uns: 'cell_type_colors', 'highlights', 'iroot' + uns: 'highlights', 'iroot' |
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| diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/inspect.obs.tabular --- a/test-data/inspect.obs.tabular Wed Jun 22 07:21:48 2022 +0000 +++ b/test-data/inspect.obs.tabular Sun Nov 12 16:42:57 2023 +0000 |
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| @@ -1,4 +1,4 @@ -index cell_type + cell_type 0 progenitor 1 progenitor 2 progenitor @@ -499,143 +499,3 @@ 17 progenitor 18 progenitor 19 progenitor -20 progenitor -21 progenitor -22 progenitor -23 progenitor -24 progenitor -25 progenitor -26 progenitor -27 progenitor -28 progenitor -29 progenitor -30 progenitor -31 progenitor -32 progenitor -33 progenitor -34 progenitor -35 progenitor -36 progenitor -37 progenitor -38 progenitor -39 progenitor -40 progenitor -41 progenitor -42 progenitor -43 progenitor -44 progenitor -45 progenitor -46 progenitor -47 progenitor -48 progenitor -49 progenitor -50 progenitor -51 progenitor -52 progenitor -53 progenitor -54 progenitor -55 progenitor -56 progenitor -57 progenitor -58 progenitor -59 progenitor -60 progenitor -61 progenitor -62 progenitor -63 progenitor -64 progenitor -65 progenitor -66 progenitor -67 progenitor -68 progenitor -69 progenitor -70 progenitor -71 progenitor -72 progenitor -73 progenitor -74 progenitor -75 progenitor -76 progenitor -77 progenitor -78 progenitor -79 progenitor -80 Neu -81 Neu -82 Neu -83 Neu -84 Neu -85 Neu -86 Neu -87 Neu -88 Neu -89 Neu -90 Neu -91 Neu -92 Neu -93 Neu -94 Neu -95 Neu -96 Neu -97 Neu -98 Neu -99 Neu -100 Neu -101 Neu -102 Neu -103 Neu -104 Neu -105 Neu -106 Neu -107 Neu -108 Neu -109 Neu -110 Neu -111 Neu -112 Neu -113 Neu -114 Neu -115 Neu -116 Neu -117 Neu -118 Neu -119 Neu -120 Neu -121 Neu -122 Neu -123 Neu -124 Neu -125 Neu -126 Neu -127 Neu -128 Neu -129 Neu -130 Neu -131 Neu -132 Neu -133 Neu -134 Neu -135 Neu -136 Neu -137 Neu -138 Neu -139 Neu -140 Neu -141 Neu -142 Neu -143 Neu -144 Neu -145 Neu -146 Neu -147 Neu -148 Neu -149 Neu -150 Neu -151 Neu -152 Neu -153 Neu -154 Neu -155 Neu -156 Neu -157 Neu -158 Neu -159 Neu |
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| diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/inspect.var.tabular --- a/test-data/inspect.var.tabular Wed Jun 22 07:21:48 2022 +0000 +++ b/test-data/inspect.var.tabular Sun Nov 12 16:42:57 2023 +0000 |
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| @@ -1,4 +1,4 @@ -index +"" Gata2 Gata1 Fog1 |
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| @@ -499,143 +499,3 @@ 17 progenitor 18 progenitor 19 progenitor -20 progenitor -21 progenitor -22 progenitor -23 progenitor -24 progenitor -25 progenitor -26 progenitor -27 progenitor -28 progenitor -29 progenitor -30 progenitor -31 progenitor -32 progenitor -33 progenitor -34 progenitor -35 progenitor -36 progenitor -37 progenitor -38 progenitor -39 progenitor -40 progenitor -41 progenitor -42 progenitor -43 progenitor -44 progenitor -45 progenitor -46 progenitor -47 progenitor -48 progenitor -49 progenitor -50 progenitor -51 progenitor -52 progenitor -53 progenitor -54 progenitor -55 progenitor -56 progenitor -57 progenitor -58 progenitor -59 progenitor -60 progenitor -61 progenitor -62 progenitor -63 progenitor -64 progenitor -65 progenitor -66 progenitor -67 progenitor -68 progenitor -69 progenitor -70 progenitor -71 progenitor -72 progenitor -73 progenitor -74 progenitor -75 progenitor -76 progenitor -77 progenitor -78 progenitor -79 progenitor -80 Neu -81 Neu -82 Neu -83 Neu -84 Neu -85 Neu -86 Neu -87 Neu -88 Neu -89 Neu -90 Neu -91 Neu -92 Neu -93 Neu -94 Neu -95 Neu -96 Neu -97 Neu -98 Neu -99 Neu -100 Neu -101 Neu -102 Neu -103 Neu -104 Neu -105 Neu -106 Neu -107 Neu -108 Neu -109 Neu -110 Neu -111 Neu -112 Neu -113 Neu -114 Neu -115 Neu -116 Neu -117 Neu -118 Neu -119 Neu -120 Neu -121 Neu -122 Neu -123 Neu -124 Neu -125 Neu -126 Neu -127 Neu -128 Neu -129 Neu -130 Neu -131 Neu -132 Neu -133 Neu -134 Neu -135 Neu -136 Neu -137 Neu -138 Neu -139 Neu -140 Neu -141 Neu -142 Neu -143 Neu -144 Neu -145 Neu -146 Neu -147 Neu -148 Neu -149 Neu -150 Neu -151 Neu -152 Neu -153 Neu -154 Neu -155 Neu -156 Neu -157 Neu -158 Neu -159 Neu |
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