Repository 'pirna_pipeline'
hg clone https://toolshed.g2.bx.psu.edu/repos/romaingred/pirna_pipeline

Changeset 52:945d903dad5a (2017-12-01)
Previous changeset 51:6bd3e935d32b (2017-12-01) Next changeset 53:bd91551eb3e1 (2017-12-01)
Commit message:
Uploaded
modified:
bin/align.pm
b
diff -r 6bd3e935d32b -r 945d903dad5a bin/align.pm
--- a/bin/align.pm Fri Dec 01 09:33:22 2017 -0500
+++ b/bin/align.pm Fri Dec 01 09:33:36 2017 -0500
b
@@ -42,9 +42,9 @@
 {
  my ( $sam, $s_uni, $out_prefix, $col_prefix, $details, $report ) = @_;
 
- my $fout = $col_prefix.'all_mappers.fastq'; 
- my $funi = $col_prefix.'unique_mappers.fastq';
- my $frej = $col_prefix.'unmapped.fastq';
+ my $fout = $col_prefix.'_all_mappers.fastq'; 
+ my $funi = $col_prefix.'_unique_mappers.fastq';
+ my $frej = $col_prefix.'_unmapped.fastq';
 
   my $repartition = $out_prefix.'distribution.txt';
  my $png_rep = $out_prefix.'distribution.png';