Repository 'dram_distill'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/dram_distill

Changeset 1:9471e3d97837 (2023-07-11)
Previous changeset 0:f9a3ea1c618c (2022-12-10) Next changeset 2:9a0944d08a99 (2024-02-09)
Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dram commit e0934fc66bfd742731505cacd18cbf53b26d4f2a
modified:
dram_distill.xml
macros.xml
b
diff -r f9a3ea1c618c -r 9471e3d97837 dram_distill.xml
--- a/dram_distill.xml Sat Dec 10 21:15:05 2022 +0000
+++ b/dram_distill.xml Tue Jul 11 23:46:25 2023 +0000
b
@@ -1,4 +1,4 @@
-<tool id="dram_distill" name="DRAM distill" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
+<tool id="dram_distill" name="DRAM distill" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@">
     <description>metagenome-assembled-genomes (MAGs)</description>
     <macros>
         <import>macros.xml</import>
@@ -21,10 +21,10 @@
 #end if
 $distillate_gene_names
 --genomes_per_product $genomes_per_product
-&& test -f 'output_dir/genome_stats.tsv' && mv 'output_dir/genome_stats.tsv' '$output_genome_stats' || echo 'No genome_stats.tsv output produced'
-&& test -f 'output_dir/metabolism_summary.xlsx' && mv 'output_dir/metabolism_summary.xlsx' '$output_metabolism_summary' || echo 'No metabolism_summary.xlsx output produced'
-&& test -f 'output_dir/product.html' && mv 'output_dir/product.html' '$output_product_html' || echo 'No product.html output produced'
-&& test -f 'output_dir/product.tsv' && mv 'output_dir/product.tsv' '$output_product_tsv' || echo 'No product.tsv output produced'
+&& (test -f 'output_dir/genome_stats.tsv' && mv 'output_dir/genome_stats.tsv' '$output_genome_stats' || echo 'No genome_stats.tsv output produced')
+&& (test -f 'output_dir/metabolism_summary.xlsx' && mv 'output_dir/metabolism_summary.xlsx' '$output_metabolism_summary' || echo 'No metabolism_summary.xlsx output produced')
+&& (test -f 'output_dir/product.html' && mv 'output_dir/product.html' '$output_product_html' || echo 'No product.html output produced')
+&& (test -f 'output_dir/product.tsv' && mv 'output_dir/product.tsv' '$output_product_tsv' || echo 'No product.tsv output produced')
     ]]></command>
     <inputs>
         <expand macro="input_file_param"/>
b
diff -r f9a3ea1c618c -r 9471e3d97837 macros.xml
--- a/macros.xml Sat Dec 10 21:15:05 2022 +0000
+++ b/macros.xml Tue Jul 11 23:46:25 2023 +0000
b
@@ -1,6 +1,6 @@
 <macros>
     <token name="@TOOL_VERSION@">1.3.5</token>
-    <token name="@VERSION_SUFFIX@">0</token>
+    <!-- token name="@VERSION_SUFFIX@">0</token -->
     <token name="@PROFILE@">20.09</token>
     <xml name="requirements">
         <requirements>