| Previous changeset 13:b6c00b82f623 (2017-06-01) Next changeset 15:084bbd8ba7b8 (2019-07-30) |
|
Commit message:
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/trim_galore commit 6aa3014c2c6f9ef9ee71b20cfffec461b3a102a5 |
|
modified:
trim_galore.xml |
| b |
| diff -r b6c00b82f623 -r 949f01671246 trim_galore.xml --- a/trim_galore.xml Thu Jun 01 08:59:04 2017 -0400 +++ b/trim_galore.xml Thu Jun 01 12:15:10 2017 -0400 |
| b |
| @@ -338,7 +338,7 @@ <param name="sPaired" value="single" /> <param name="settingsType" value="custom" /> <param name="report" value="true" /> - <output name="trimmed_reads_single" file="sanger_full_range_results1.fastq.gz" ftype="fastqsanger.gz" compare="sim_size" delta="0"/> + <output name="trimmed_reads_single" file="sanger_full_range_results1.fastq.gz" ftype="fastqsanger.gz" decompress="true" /> <output name="report_file" file="sanger_full_range_report_results1gz.txt" ftype="txt" lines_diff="9" /> </test> @@ -352,7 +352,7 @@ <param name="input_singles" value="sanger_full_range_original_sanger.fastq.gz" ftype="fastqsanger.gz" /> <param name="sPaired" value="single" /> <param name="trimming_select" value="--illumina" /> - <output name="trimmed_reads_single" file="sanger_full_range_results2.fastq.gz" ftype="fastqsanger.gz" compare="sim_size" delta="0"/> + <output name="trimmed_reads_single" file="sanger_full_range_results2.fastq.gz" ftype="fastqsanger.gz" decompress="true" /> </test> <test> @@ -365,7 +365,7 @@ <param name="input_singles" value="sanger_full_range_original_sanger.fastq.gz" ftype="fastqsanger.gz" /> <param name="sPaired" value="single" /> <param name="adapter" value="AAAGAGC" /> - <output name="trimmed_reads_single" file="sanger_full_range_results3.fastq.gz" ftype="fastqsanger.gz" compare="sim_size" delta="0"/> + <output name="trimmed_reads_single" file="sanger_full_range_results3.fastq.gz" ftype="fastqsanger.gz" decompress="true" /> </test> <test> @@ -384,8 +384,8 @@ <param name="sPaired" value="paired" /> <param name="settingsType" value="custom" /> <param name="report" value="true" /> - <output name="trimmed_reads_pair1" file="paired_example_pair1_results2.fastq.gz" ftype="fastqsanger.gz" compare="sim_size" delta="30"/> - <output name="trimmed_reads_pair2" file="paired_example_pair2_results2.fastq.gz" ftype="fastqsanger.gz" compare="sim_size" delta="30"/> + <output name="trimmed_reads_pair1" file="paired_example_pair1_results2.fastq.gz" ftype="fastqsanger.gz" decompress="true" /> + <output name="trimmed_reads_pair2" file="paired_example_pair2_results2.fastq.gz" ftype="fastqsanger.gz" decompress="true" /> <output name="report_file" file="paired_example_results2gz.txt" ftype="txt" lines_diff="24" /> </test> @@ -430,13 +430,13 @@ <output name="report_file" file="paired_collection_example_results3gz.txt" ftype="txt" lines_diff="25" /> <output_collection name="trimmed_reads_paired_collection" type="paired"> - <element name="forward" file="paired_collection_example_pair1_results3.fastq.gz" ftype="fastqsanger.gz" compare="sim_size" delta="30"/> - <element name="reverse" file="paired_collection_example_pair2_results3.fastq.gz" ftype="fastqsanger.gz" compare="sim_size" delta="30"/> + <element name="forward" file="paired_collection_example_pair1_results3.fastq.gz" ftype="fastqsanger.gz" decompress="true" /> + <element name="reverse" file="paired_collection_example_pair2_results3.fastq.gz" ftype="fastqsanger.gz" decompress="true" /> </output_collection> <output_collection name="trimmed_reads_unpaired_collection" type="paired"> - <element name="forward" file="paired_collection_example_unpair1_results3.fastq.gz" ftype="fastqsanger.gz" compare="sim_size" delta="30"/> - <element name="reverse" file="paired_collection_example_unpair2_results3.fastq.gz" ftype="fastqsanger.gz" compare="sim_size" delta="30"/> + <element name="forward" file="paired_collection_example_unpair1_results3.fastq.gz" ftype="fastqsanger.gz" decompress="true" /> + <element name="reverse" file="paired_collection_example_unpair2_results3.fastq.gz" ftype="fastqsanger.gz" decompress="true" /> </output_collection> </test> </tests> |