| Next changeset 1:2f7278120be9 (2016-03-22) |
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Commit message:
planemo upload for repository https://bitbucket.org/drosofff/gedtools/ |
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added:
fasta_tabular_converter.py fasta_tabular_converter.xml test-data/input.fa test-data/output.faw test-data/output.tab |
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| diff -r 000000000000 -r 951cb6b3979b fasta_tabular_converter.py --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/fasta_tabular_converter.py Sun Jun 21 14:28:49 2015 -0400 |
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| @@ -0,0 +1,88 @@ +#!/usr/bin/python +# +import sys +from collections import defaultdict + +def readfasta_writetabular(fasta, tabular): + F = open(fasta, "r") + for line in F: + if line[0] == ">": continue + else: + seqdic[line[:-1]] += 1 + F.close() + F = open(tabular, "w") + for seq in sorted(seqdic, key=seqdic.get, reverse=True): + print >> F, "%s\t%s" % (seq, seqdic[seq]) + F.close() + + +def readtabular_writefasta(tabular, fasta): + F = open(tabular, "r") + Fw = open(fasta, "w") + counter = 0 + for line in F: + fields = line.split() + for i in range(int(fields[1])): + counter += 1 + print >> Fw, ">%s\n%s" % (counter, fields[0]) + F.close() + Fw.close() + +def readtabular_writefastaweighted (tabular, fasta): + F = open(tabular, "r") + Fw = open(fasta, "w") + counter = 0 + for line in F: + counter += 1 + fields = line[:-1].split() + print >> Fw, ">%s_%s\n%s" % (counter, fields[1], fields[0]) + F.close() + Fw.close() + +def readfastaeighted_writefastaweighted(fastaweigthed_input, fastaweigthed_reparsed): + F = open(fastaweigthed_input, "r") + number_reads = 0 + for line in F: + if line[0] == ">": + weigth = int(line[1:-1].split("_")[-1]) + number_reads += weigth + else: + seqdic[line[:-1]] += weigth + F.close() + F = open(fastaweigthed_reparsed, "w") + n=0 + for seq in sorted(seqdic, key=seqdic.get, reverse=True): + n += 1 + print >> F, ">%s_%s\n%s" % (n, seqdic[seq], seq) + F.close() + print "%s reads collapsed" % number_reads + +def readfastaeighted_writefasta(fastaweigthed, fasta): + F = open(fastaweigthed, "r") + Fw = open(fasta, "w") + counter = 0 + for line in F: + if line[0] == ">": + weigth = int(line[1:-1].split("_")[-1]) + else: + seq = line[:-1] + for i in range (weigth): + counter += 1 + print >> Fw, ">%s\n%s" % (counter, seq) + F.close() + Fw.close() + + +seqdic = defaultdict(int) +option = sys.argv[3] + +if option == "fasta2tabular": + readfasta_writetabular(sys.argv[1], sys.argv[2]) +elif option == "tabular2fasta": + readtabular_writefasta(sys.argv[1], sys.argv[2]) +elif option == "tabular2fastaweight": + readtabular_writefastaweighted (sys.argv[1], sys.argv[2]) +elif option == "fastaweight2fastaweight": + readfastaeighted_writefastaweighted(sys.argv[1], sys.argv[2]) +elif option == "fastaweight2fasta": + readfastaeighted_writefasta(sys.argv[1], sys.argv[2]) |
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| diff -r 000000000000 -r 951cb6b3979b fasta_tabular_converter.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/fasta_tabular_converter.xml Sun Jun 21 14:28:49 2015 -0400 |
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| @@ -0,0 +1,75 @@ +<tool id="fasta_tabular_converter" name="fasta - tabular" version="1.0.2"> + <description>conversions</description> + <command interpreter="python">fasta_tabular_converter.py $input $output $switch.conversionType</command> + <inputs> + <conditional name="switch"> + <param name="conversionType" type="select" label="conversion option"> + <option value="fasta2tabular" selected="true">fasta to tabular</option> + <option value="tabular2fasta">tabular to fasta</option> + <option value="tabular2fastaweight">tabular to weighted fasta</option> + <option value="fastaweight2fastaweight">recompile weighted fasta to catenated fasta weighted</option> + <option value="fastaweight2fasta">fasta weighted to fasta</option> + </param> + <when value="fasta2tabular"> + <param name="input" type="data" format="fasta" label="fasta file to convert to tabular"/> + </when> + <when value="tabular2fasta"> + <param name="input" type="data" format="tabular" label="tabular file to convert to fasta"/> + </when> + <when value="tabular2fastaweight"> + <param name="input" type="data" format="tabular" label="tabular file to convert to fasta weighted"/> + </when> + <when value="fastaweight2fastaweight"> + <param name="input" type="data" format="fasta" label="catenated fasta weighted to recompile" help="Use this option only if you known what you're doing"/> + </when> + <when value="fastaweight2fasta"> + <param name="input" type="data" format="fasta" label="fasta weighted file to convert to fasta"/> + </when> + </conditional> + + </inputs> + + <outputs> + <data format="fasta" name="output" label="${switch.conversionType} conversion"> + <change_format> + <when input="switch.conversionType" value="fasta2tabular" format="tabular"/> + <when input="switch.conversionType" value="fastaweight2fastaweight" format="fasta"/> + <when input="switch.conversionType" value="fastaweight2fasta" format="fasta"/> + </change_format> + </data> +</outputs> + + <tests> + <test> + <param name="conversionType" value="fasta2tabular" /> + <param ftype="fasta" name="input" value="input.fa" /> + <output file="output.tab" name="output" /> + </test> + <test> + <param name="conversionType" value="tabular2fastaweight" /> + <param ftype="tabular" name="input" value="output.tab" /> + <output file="output.faw" name="output" /> + </test> + </tests> + + +<help> + +**What it does** + +Converts fasta files to tabular files with sequence on first column and occurence of the sequence in the second column; and reciprocally. + +This format is suitable for storage of sequence datasets in the data library, and will be used in the future. + +Regeneration of the original fasta file from the tabular format is ensured by the same tool + +This tool also handle a fasta "weigthed" format with headers as: +>id_numberofreads +ATGCATGACCAGATAGGAC +etc... + +with generation of the "weigthed" format from a tabular format, and recompilation of catenated weighted fasta files + +</help> + +</tool> |
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| diff -r 000000000000 -r 951cb6b3979b test-data/input.fa --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/input.fa Sun Jun 21 14:28:49 2015 -0400 |
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| @@ -0,0 +1,500 @@ +>1 +TAGTTACCTTCATATCTCTCTTTA +>2 +TCTATTCATACAAAACACTAATACCC +>3 +ACAACCTCAACTCATATTT +>4 +TATAATTTTATTTTATATTTTCTCT +>5 +TCTTCTATATAATCCTTTATTATAA +>6 +TAAAATAAACCAAAACCCAAAAAT +>7 +AATCTACAATTTCCATTACGACTCC +>8 +TTTCCGACAAATACACCATCTTC +>9 +CAGATTCACTGATTTTCTTACGCC +>10 +CAAGAATACAAAAAATACTAATTA +>11 +AACTCTCTAATTTAACTTTGTGC +>12 +AAAAACACACAGACACAAGCAGCAAT +>13 +TTACTAGATCCACCCTCATTA +>14 +ATGTTATTTACTTTTTCCCCTTATA +>15 +CGATATTTTCTCCTCTTACC +>16 +TACAGAGAAATATACAACACTCACC +>17 +ATGAAATTCGAACAATACGTC +>18 +GAGAATAAATATTTCAATGGTCTATTG +>19 +TGCTTTTACTACATATTTTTTATTTTTTTA +>20 +CATACCTTAAATTATCTCTTTCTT +>21 +TTTGTTTTTCATTTTTTTATCTTT +>22 +TTATTATCTATTTTAATTTTTCTTAA +>23 +TATTATCATCTCGTTCTTCCTTCTC +>24 +TCAACTGGCAAGAATTTTTGAAAATT +>25 +TACAAATTTTTTTTTCTTTCTTAT +>26 +TTTTCTTTTTTTCATTTTCTCTTTTA +>27 +AAGATGGAGTAGTTTTTT +>28 +TCTCATCTTACAATTTTTTAAAACTT +>29 +CATACCTACAAAAAAGCTTCTCTTAC +>30 +TTTTATATTTCCTTATATCTTTACTA +>31 +GGAGATTGTAGAACGAAAGGAAAAT +>32 +TCTATTTCTTTATTTTTTTTATTAT +>33 +CGGACGGTATATTTTTTAATATAA +>34 +TTCTTGGACTACACATTTTTTATTGTTTTA +>35 +TACTATATACTTCTTCAAATCACA +>36 +ATTTTACTTCATCATTTTC +>37 +TATTTCCAACCTTCAACCTCAAATAA +>38 +CACGACTTTATTCTTTTTATCTCA +>39 +TTCTTTTACTACATATTTTTTATTTTTTTA +>40 +TTTATTACAACCCTATCTTACCTCAA +>41 +CGATATTTTCTCCTCGTACC +>42 +TAATTACCATTGCTAACTATCCA +>43 +CATTAATTCATCCATTTAAACTAA +>44 +GAAACAAACAACACATACCCTCTGGC +>45 +TACTTTTTTCTTAATTTTTTATTAAAC +>46 +TAACTTTAACTTTTTTACT +>47 +TTCTTTTACTACATATTGTTTATTTTTTTA +>48 +TCTAGTCTGAGCGTAGTACCAGATTG +>49 +TTTTTTATCAATTTTCACCATTCAT +>50 +AATGACACACTCTTCATCAAC +>51 +TAACATAAATTTTAATCATAAATTG +>52 +TCTATATTATTTTTATCAATTTTCACC +>53 +TCCCAACCCTCGAGCATCATTTTC +>54 +TAGTCATACATACCTAATTATACATA +>55 +TACAAAAAATGCGAAAATTGACCCT +>56 +GAGAACTTTTAATCATTTTAC +>57 +TCTTATTTTAATCTTCCAATTTC +>58 +CGGCACATGTTGAATTACACTCA +>59 +CAGTTTCACAAAAGATCTTTTAA +>60 +GCCAACGACCATACCACGA +>61 +CAAATAACAAACTGAATAAACGAAA +>62 +TAGTTTCACTACTTTATTCTTTTTA +>63 +TGAGGAAAACAGAAAAATGAGAGACA +>64 +TATATAAATCTTCAACATCAA +>65 +TGATTTACTTACATTCTTTTTTT +>66 +CTTCTTTTACTACATATTTTTTATTTTTTTA +>67 +TACTGAAAACGGGCGCATATCAGTGG +>68 +TATTCAATCACTCCATTATATATAACA +>69 +TATATTGCCTCCCCATAATCCTT +>70 +TCGCCGTAAAGCCAGTCGTTCTCC +>71 +TTTAAACACTTCCTACATCAAATTTC +>72 +TTTGTTTTTTACTATATTT +>73 +TCTTTTTTTTAATACTTATTTTCATT +>74 +TAAGTTTTTAATCATTTTTTTT +>75 +TGAGAATGACTTCTTCACGATCTCTT +>76 +AATTTATTTAATTTATATTCTAACTAA +>77 +AAAAAATATCTTTTTTAACTCGTGGCC +>78 +AAGACAACAATGACATATAAGACG +>79 +TGAGCTAGAACTGCACCCACTCCA +>80 +ACTAAACTTTTCTTACCATATTTCTA +>81 +TATTTCACTTTATACTTCCTTAA +>82 +TATCTATCTTTGATCTTCTTTTCA +>83 +TTTTTATCAATTTTCACCATTC +>84 +TAAAAATAATTGTCTTTAATTTCA +>85 +TTAAAGACGCAACAACTAACATT +>86 +TAACCTTGCAGAACTATACGATTCAAA +>87 +TACTATTTTATTATACATACATACATTA +>88 +TAGTGGACTTTAAAAAAAAAAAAAAAAAA +>89 +AATGTCACTTGAAGAATTCACGT +>90 +TAATAAGAAACTGTTCAAACAATCCAC +>91 +AAGCACGCCTTACCACAATTTATAA +>92 +CCATATATGACTGACTCATTTCAC +>93 +TTAATATGTAATTTCATACCTCAC +>94 +AGGATTTTTAAGCCCATATGTTTCC +>95 +ACAGCAGGACGGTGATCA +>96 +TGATGACGGGCAGCAGGGATTTTC +>97 +TTGTAAAACATTCTTTCTCCTGAC +>98 +TTCTTCCTTTTATCCTCTCTTAA +>99 +ATTATTAATAAATTATTATAA +>100 +CTGGAAACTATTGATCAAATT +>101 +TACAACTAACATCCTTTCTTCTTCC +>102 +TCAAATGCAAATTGGATTTATGA +>103 +TCCTGAGGACGAGGGGCGTTTAGC +>104 +TACACAGACTTACAAAACACATCCTTC +>105 +GAAAGGAAGGGAAGAAAGCGAAAGGA +>106 +TTAAACAATTTGGAATTAATT +>107 +TAGCCTTTACTAGGCTTTTTCTAA +>108 +CGATATTTTCTCCTCTTACCT +>109 +TGGAATGTAAAGAAGTATGGAG +>110 +TTTTTAACTCCCATCATTTTTCCTC +>111 +TTTTTTATCATTTTTCACCTAAAAAA +>112 +GAACAATTTTTCAATTTTTTACATTA +>113 +TATGGATTATTTCAAAATTTTTTTTT +>114 +TAACGGAGCACGAGAACGAAGTGG +>115 +CAATTTTTAATTCCTTTTTTCTTCTT +>116 +AGATGTTGATCTAAACTCTCCCA +>117 +TGAGCGGAGAACCAGAGTTGATGAGC +>118 +TAACAAATAGAACGTTCTAATTTAAA +>119 +CTAGACAAGATGCTATAAATTTTAAA +>120 +TTTTCTTTACCCATCTTTACTTTCCC +>121 +TACACACTCATCAACCAAAGGACG +>122 +TCTTATTATCATTTTTTTATCCCTT +>123 +TCAGAGTTCTACAGGTCCTACGATT +>124 +TTTATTACTTAGTCATAATTCCAA +>125 +GCCGGGGCGTGAGATGTCTGCATTA +>126 +GACGAAACGCAACAACAAAATGGACG +>127 +TAGACTTTCTACTCATTATTAC +>128 +AAATTGCAAAGATGGAAAATAAAACT +>129 +CCTTACTCAACATACTTAATCATACTTA +>130 +TGCTTGGACTACATATGGTTGAGTG +>131 +GAATGATCGCACCACCACCTCAACGTT +>132 +TCCACCTATTTATCTTTTCTT +>133 +TGGACAAGAACCACGCGACGGGTGT +>134 +CAAGATATGAACAAAGCAAAGACAC +>135 +CAAACGGAACAAGACATCACCATC +>136 +NATTCTTACTCCATTTCAATTTACT +>137 +TAGAACTCGAACCAGAGCTCC +>138 +CGGAAAAGAATGTAGACCATTTAA +>139 +TACAAACGGAACTTTCGTCATAA +>140 +GGTATCTTTATATTTTAATTTTCTT +>141 +TATTCCGACAATACCTTCTTTAC +>142 +AACTTTAAATTTTTAATAACCTT +>143 +CATAATATAAACTTATCTT +>144 +TATTTATAAATTTTTTCTTGAGAC +>145 +TTTTTTTTTTGTTTTTATTTTTATCAT +>146 +TATTATACATAGAATAACAAATCTTT +>147 +TGGAGTAGCACAGTCGTCTGAAATC +>148 +TATTTCTTTTTTAACTTCTTTTC +>149 +TTATAATCACGGCACCCTATACA +>150 +TTCTTTTACTACATATTTTTTATTTTT +>151 +TAGCGAGATGGACCAACGTGCTGT +>152 +CCAGAAAACAATACAACATCCTCA +>153 +TCCGAAAACAAGGCCCGTCGCT +>154 +TACTCAATAGAACTCTACTCACTCATA +>155 +AACGGGGAATAAGGGTTCG +>156 +TCAGTCTTTTTTTCTCTCCTA +>157 +AATATAAAAATACAATCAACCATTGCA +>158 +GGACGGAGAACTGATAAGGGCA +>159 +TAAAGAAGAAGAATTGATTTTAAT +>160 +TCATTACACTTCTTACAAAAC +>161 +CCGCGATCTGCTTATTTATAATCTT +>162 +TCTAAACACCCACGAAAATCTCTTAC +>163 +AACAGGAAAAACAGAAGGATTTCTA +>164 +TCTCTTTTATTTTTATCTTTCCTT +>165 +AACATTTTATCAATTATACATTA +>166 +GCAGATAGAAATCAATACAAAAATC +>167 +TTAATGACACACGGGAAAAACACCG +>168 +TACAGACAACACATACGGACTTAAGT +>169 +TCCACAACAACTCTATCTAAAGCATT +>170 +ATAAAGCTAGATTACCAAAGCAT +>171 +TACCTCTTTATTAACCTCCACCTCTA +>172 +TACACCTCTTTTTACTTTTTTATT +>173 +CACCGAACCGGGAAGGCGAACAAC +>174 +TAGGTACTTACCTTTTTTTTACACAA +>175 +AGGAATATGATGAAATAAAAAAAT +>176 +TATTATTTTTTTATTCCATTCATAT +>177 +TAAAATAAATAAGTCCGACGACAA +>178 +TCTGTATTTGACTTATTACTTTCTCC +>179 +AAGGAATTAAAGCAATAATTCTAA +>180 +TTCATTTTATTTTTAAATATCTTTTTT +>181 +TTAGTATTAATCTTCACTTAA +>182 +TATGGAGAAACAGCGATATAAGTCA +>183 +CCCGAAAAGCCGAGGACGACTTA +>184 +CACAGACTGAGGCAGAAAAAACAA +>185 +TCAAGCCTTTTGAAGAACTGACCTAAA +>186 +TAAGAAACTGAGCTAACGCAATGTACC +>187 +CGATATTTTCTCCTCTGACC +>188 +TAACTACTTTTACATTAATACTAA +>189 +ACCAGCACCTTCCGACTCAACGTCAAA +>190 +TCAAAGAACAATGTAAAGCCGCGAC +>191 +TTGATTCTTCTTTTTCACAAAA +>192 +TACAAAACAAACAAATTACAATCTAAA +>193 +GAAACCATTATCTTATCTTTATACA +>194 +CTATATTTTCTCTCTTACC +>195 +TCAGAAGAACAGAGAATTGATTTT +>196 +TAATAAATTATTAAATAAAAAAAAAA +>197 +CCGACCGAGCAAATAAACACAGGAACG +>198 +AAGTGAAGAAGTAGTTTTT +>199 +TGGACGGAGAACTGATAAGGGC +>200 +TGCTTGGACTACATATGGTTGAGGG +>201 +TACAAGACTAAAACAAACGTGAAGT +>202 +TGAAACTGAAACTAACATACAAAATATT +>203 +TATCTGATCAACAATCTTTTCCCAT +>204 +TTTAAGACTTATGAGCTTG +>205 +CAAGGCTCAGAAGAACATCACCAAGACC +>206 +TTCAAGTAGATTGCATTTTTTAATA +>207 +CGCAACCAGCAGCAACTCCTAGCAT +>208 +TACAAACGGAACTTTCTTCATAACTTC +>209 +ACAAATCATAAATTTTTTTTTACT +>210 +TCCGAAAAATCGTAGGACCCGGGCA +>211 +CGCCGCAAGATGAATACTCTAATGA +>212 +TGACCAAAGACAAACAAACAATAAATA +>213 +AAAAGGAAAAACAGAAAAATTGGG +>214 +TTCTTGATAACGCATCTTCTACAT +>215 +TACTGAAACAAGGAAACACAAGC +>216 +TCAAAAAGTAATAGGGATCGTTA +>217 +TGGAATGTAAAGAAGTATGGAG +>218 +TAAAATTGTAATATTTAAATAATAT +>219 +GAGGATTAAAAGAACGGTTTATAA +>220 +TTCTTTGACTACATATTTTTTATT +>221 +TACAAACGTAATTTTCGCATAACATC +>222 +AGAACAATTAAATAAAATAGCATA +>223 +TAATAATTTAAATAAATATAAATTT +>224 +AATTGCAACAGAGACTGGAA +>225 +TTAAGTTTTAGACATAATCTATTACAA +>226 +TGAAAGGAAAAACAGGACACGGGA +>227 +AACAGGGAGATCAACAGCGTTGACA +>228 +GGACGGAGAACTGATAATGGC +>229 +TGTGTAATCTTTCTACTTCTTCTAC +>230 +TTTACCAGAGGAGTCGAGTTTTT +>231 +AAAATCGACTGCCGAAAACATTTTAA +>232 +TGCTTGGACTACATATGGTTGAGTG +>233 +TACAGACAACACATACGGACTTAA +>234 +GAAGAGGAGGAGGAGTTTGTAAG +>235 +TTACAATCTACTATTCTTTTATTA +>236 +TTATTACATCGTCCACATATAACAAAA +>237 +TTTTTAACTCATTTTACAATTAAAC +>238 +AAAACCCGGACAAACCATCGGAGGA +>239 +CAACACATGACGCGACAATTCTTG +>240 +TACACACTCATCAACCAAAGTACGTA +>241 +TTTTCATTTCTTCTTCAAATCCTTT +>242 +AACAACTGCAAACATCTACCACA +>243 +TAGTTTTAAATATTTCTTTTTTTC +>244 +AAAGACAAAAGAAATACAGGCACT +>245 +TTTGATACCTTTATACCATACCTATT +>246 +ACAGCAGGACGGTGATCA +>247 +TTCTAGCACAACACGCACACATATA +>248 +TAATCAAAAAACTCTTCATTTTTA +>249 +TAGGAACTTCATACCGGTCTC +>250 +TATTTCAGCAACAGACTAAGACTAA |
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| diff -r 000000000000 -r 951cb6b3979b test-data/output.faw --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/output.faw Sun Jun 21 14:28:49 2015 -0400 |
| b |
| b'@@ -0,0 +1,494 @@\n+>1_2\n+ACAGCAGGACGGTGATCA\n+>2_2\n+TGCTTGGACTACATATGGTTGAGTG\n+>3_2\n+TGGAATGTAAAGAAGTATGGAG\n+>4_1\n+AATTTATTTAATTTATATTCTAACTAA\n+>5_1\n+TTATAATCACGGCACCCTATACA\n+>6_1\n+TCCGAAAAATCGTAGGACCCGGGCA\n+>7_1\n+TCCCAACCCTCGAGCATCATTTTC\n+>8_1\n+TTGATTCTTCTTTTTCACAAAA\n+>9_1\n+AGAACAATTAAATAAAATAGCATA\n+>10_1\n+CCAGAAAACAATACAACATCCTCA\n+>11_1\n+TCTAGTCTGAGCGTAGTACCAGATTG\n+>12_1\n+TTTTTAACTCCCATCATTTTTCCTC\n+>13_1\n+GCAGATAGAAATCAATACAAAAATC\n+>14_1\n+AAGTGAAGAAGTAGTTTTT\n+>15_1\n+AATGTCACTTGAAGAATTCACGT\n+>16_1\n+TTTACCAGAGGAGTCGAGTTTTT\n+>17_1\n+GGTATCTTTATATTTTAATTTTCTT\n+>18_1\n+TTACTAGATCCACCCTCATTA\n+>19_1\n+TATATAAATCTTCAACATCAA\n+>20_1\n+GAAACCATTATCTTATCTTTATACA\n+>21_1\n+GGAGATTGTAGAACGAAAGGAAAAT\n+>22_1\n+ACTAAACTTTTCTTACCATATTTCTA\n+>23_1\n+TCAAGCCTTTTGAAGAACTGACCTAAA\n+>24_1\n+TAACATAAATTTTAATCATAAATTG\n+>25_1\n+TAGCGAGATGGACCAACGTGCTGT\n+>26_1\n+TACAAACGTAATTTTCGCATAACATC\n+>27_1\n+CGGAAAAGAATGTAGACCATTTAA\n+>28_1\n+GAAAGGAAGGGAAGAAAGCGAAAGGA\n+>29_1\n+CAAGAATACAAAAAATACTAATTA\n+>30_1\n+CATACCTACAAAAAAGCTTCTCTTAC\n+>31_1\n+TAAAATAAATAAGTCCGACGACAA\n+>32_1\n+AGGAATATGATGAAATAAAAAAAT\n+>33_1\n+TTTTTTTTTTGTTTTTATTTTTATCAT\n+>34_1\n+TTTTTAACTCATTTTACAATTAAAC\n+>35_1\n+CCGCGATCTGCTTATTTATAATCTT\n+>36_1\n+TAGGTACTTACCTTTTTTTTACACAA\n+>37_1\n+TCATTACACTTCTTACAAAAC\n+>38_1\n+TATTATACATAGAATAACAAATCTTT\n+>39_1\n+ATGTTATTTACTTTTTCCCCTTATA\n+>40_1\n+TCCGAAAACAAGGCCCGTCGCT\n+>41_1\n+TGCTTTTACTACATATTTTTTATTTTTTTA\n+>42_1\n+GAACAATTTTTCAATTTTTTACATTA\n+>43_1\n+AACATTTTATCAATTATACATTA\n+>44_1\n+TATCTGATCAACAATCTTTTCCCAT\n+>45_1\n+AATTGCAACAGAGACTGGAA\n+>46_1\n+TATTCAATCACTCCATTATATATAACA\n+>47_1\n+CAAACGGAACAAGACATCACCATC\n+>48_1\n+TCTTCTATATAATCCTTTATTATAA\n+>49_1\n+TGATGACGGGCAGCAGGGATTTTC\n+>50_1\n+TTTATTACAACCCTATCTTACCTCAA\n+>51_1\n+AACAGGAAAAACAGAAGGATTTCTA\n+>52_1\n+CGATATTTTCTCCTCGTACC\n+>53_1\n+AAATTGCAAAGATGGAAAATAAAACT\n+>54_1\n+TACACACTCATCAACCAAAGGACG\n+>55_1\n+TATATTGCCTCCCCATAATCCTT\n+>56_1\n+TACAAACGGAACTTTCTTCATAACTTC\n+>57_1\n+GGACGGAGAACTGATAATGGC\n+>58_1\n+TTCTTTGACTACATATTTTTTATT\n+>59_1\n+TCTTTTTTTTAATACTTATTTTCATT\n+>60_1\n+TACTTTTTTCTTAATTTTTTATTAAAC\n+>61_1\n+AATATAAAAATACAATCAACCATTGCA\n+>62_1\n+CAGTTTCACAAAAGATCTTTTAA\n+>63_1\n+GAAACAAACAACACATACCCTCTGGC\n+>64_1\n+AATGACACACTCTTCATCAAC\n+>65_1\n+AAGATGGAGTAGTTTTTT\n+>66_1\n+ACAACCTCAACTCATATTT\n+>67_1\n+TTAAACAATTTGGAATTAATT\n+>68_1\n+TACAAAAAATGCGAAAATTGACCCT\n+>69_1\n+GGACGGAGAACTGATAAGGGCA\n+>70_1\n+TTAAGTTTTAGACATAATCTATTACAA\n+>71_1\n+TTATTATCTATTTTAATTTTTCTTAA\n+>72_1\n+CACCGAACCGGGAAGGCGAACAAC\n+>73_1\n+TCCACCTATTTATCTTTTCTT\n+>74_1\n+TCGCCGTAAAGCCAGTCGTTCTCC\n+>75_1\n+TCAAAGAACAATGTAAAGCCGCGAC\n+>76_1\n+TGGACAAGAACCACGCGACGGGTGT\n+>77_1\n+CCCGAAAAGCCGAGGACGACTTA\n+>78_1\n+TTTTTTATCATTTTTCACCTAAAAAA\n+>79_1\n+TAGAACTCGAACCAGAGCTCC\n+>80_1\n+TCTATATTATTTTTATCAATTTTCACC\n+>81_1\n+TCTATTTCTTTATTTTTTTTATTAT\n+>82_1\n+TTTGATACCTTTATACCATACCTATT\n+>83_1\n+ATAAAGCTAGATTACCAAAGCAT\n+>84_1\n+GCCAACGACCATACCACGA\n+>85_1\n+CGGCACATGTTGAATTACACTCA\n+>86_1\n+TACTATTTTATTATACATACATACATTA\n+>87_1\n+TTAATGACACACGGGAAAAACACCG\n+>88_1\n+TAGTTTCACTACTTTATTCTTTTTA\n+>89_1\n+AACAGGGAGATCAACAGCGTTGACA\n+>90_1\n+CGATATTTTCTCCTCTGACC\n+>91_1\n+ACCAGCACCTTCCGACTCAACGTCAAA\n+>92_1\n+AAGGAATTAAAGCAATAATTCTAA\n+>93_1\n+TACAAAACAAACAAATTACAATCTAAA\n+>94_1\n+CAATTTTTAATTCCTTTTTTCTTCTT\n+>95_1\n+TACAGACAACACATACGGACTTAA\n+>96_1\n+TCTGTATTTGACTTATTACTTTCTCC\n+>97_1\n+TGAGCTAGAACTGCACCCACTCCA\n+>98_1\n+CGCCGCAAGATGAATACTCTAATGA\n+>99_1\n+TATTTCTTTTTTAACTTCTTTTC\n+>100_1\n+TTACAATCTACTATTCTTTTATTA\n+>101_1\n+TTTAAACACTTCCTACATCAAATTTC\n+>102_1\n+TGTGTAATCTTTCTACTTCTTCTAC\n+>103_1\n+TCTATTCATACAAAACACTAATACCC\n+>104_1\n+TGGAGTAGCACAGTCGTCTGAAATC\n+>105_1\n+AAGCACGCCTTACCACAATTTATAA\n+>106_1\n+CTGGAAACTATTGATCAAATT\n+>107_1\n+TACACAGACTTACAAAACACATCCTTC\n+>108_1\n+TTCAAGTAGATTGCATTTTTTAATA\n+>109_1\n+TTATTACATCGTCCACATATAACAAAA\n+>110_1\n+CAAGGCTCAGAAGAACATCACCAAGACC\n+>111_1\n+TGAGGAAAACAGAAAAATGAGAGACA\n+>112_1\n+TCAAAAAGTAATAGGGATCGTTA\n+>113_1\n+TAACTTTAACTTTTTTACT\n+>114_1\n+TATTCCGACAATACCTTCTTTAC\n+>115_1\n+TTTGTTTTTTACTATATTT\n+>116_1\n+TTCATTTTATTTTTAAATATCTTTTTT\n+>117_1\n+TACTCAATAGAACTCTACTCACTCATA\n+>118_1\n+TGAAAGGAAAAACAGGACACGGGA\n+>119_1\n+AAAATCGACTGCCGAAAACATTTTAA\n+>120_1\n+TAC'..b'>132_1\n+CAAATAACAAACTGAATAAACGAAA\n+>133_1\n+TGAGAATGACTTCTTCACGATCTCTT\n+>134_1\n+TCTTATTATCATTTTTTTATCCCTT\n+>135_1\n+TCAAATGCAAATTGGATTTATGA\n+>136_1\n+CCTTACTCAACATACTTAATCATACTTA\n+>137_1\n+TAGACTTTCTACTCATTATTAC\n+>138_1\n+TGAAACTGAAACTAACATACAAAATATT\n+>139_1\n+AAAACCCGGACAAACCATCGGAGGA\n+>140_1\n+TACAGACAACACATACGGACTTAAGT\n+>141_1\n+TATTTCAGCAACAGACTAAGACTAA\n+>142_1\n+AACTTTAAATTTTTAATAACCTT\n+>143_1\n+TATTTATAAATTTTTTCTTGAGAC\n+>144_1\n+TTAATATGTAATTTCATACCTCAC\n+>145_1\n+CACAGACTGAGGCAGAAAAAACAA\n+>146_1\n+TAAAGAAGAAGAATTGATTTTAAT\n+>147_1\n+TACTGAAAACGGGCGCATATCAGTGG\n+>148_1\n+TCAGTCTTTTTTTCTCTCCTA\n+>149_1\n+TATAATTTTATTTTATATTTTCTCT\n+>150_1\n+NATTCTTACTCCATTTCAATTTACT\n+>151_1\n+TTGTAAAACATTCTTTCTCCTGAC\n+>152_1\n+TAATTACCATTGCTAACTATCCA\n+>153_1\n+TTCTTCCTTTTATCCTCTCTTAA\n+>154_1\n+TCTAAACACCCACGAAAATCTCTTAC\n+>155_1\n+AAAAACACACAGACACAAGCAGCAAT\n+>156_1\n+CGGACGGTATATTTTTTAATATAA\n+>157_1\n+TATGGAGAAACAGCGATATAAGTCA\n+>158_1\n+TACAACTAACATCCTTTCTTCTTCC\n+>159_1\n+AACTCTCTAATTTAACTTTGTGC\n+>160_1\n+TCCTGAGGACGAGGGGCGTTTAGC\n+>161_1\n+TATTTCCAACCTTCAACCTCAAATAA\n+>162_1\n+TGGACGGAGAACTGATAAGGGC\n+>163_1\n+TTTAAGACTTATGAGCTTG\n+>164_1\n+TTAAAGACGCAACAACTAACATT\n+>165_1\n+TAGGAACTTCATACCGGTCTC\n+>166_1\n+CGATATTTTCTCCTCTTACC\n+>167_1\n+GAGGATTAAAAGAACGGTTTATAA\n+>168_1\n+GAATGATCGCACCACCACCTCAACGTT\n+>169_1\n+TTTTCTTTACCCATCTTTACTTTCCC\n+>170_1\n+AAGACAACAATGACATATAAGACG\n+>171_1\n+TAATAATTTAAATAAATATAAATTT\n+>172_1\n+TACTGAAACAAGGAAACACAAGC\n+>173_1\n+TCAGAAGAACAGAGAATTGATTTT\n+>174_1\n+CATACCTTAAATTATCTCTTTCTT\n+>175_1\n+TTCTTTTACTACATATTTTTTATTTTT\n+>176_1\n+AAAAAATATCTTTTTTAACTCGTGGCC\n+>177_1\n+TAACAAATAGAACGTTCTAATTTAAA\n+>178_1\n+TAGTTACCTTCATATCTCTCTTTA\n+>179_1\n+TAAAATTGTAATATTTAAATAATAT\n+>180_1\n+AAAAGGAAAAACAGAAAAATTGGG\n+>181_1\n+AGATGTTGATCTAAACTCTCCCA\n+>182_1\n+TACCTCTTTATTAACCTCCACCTCTA\n+>183_1\n+TTTCCGACAAATACACCATCTTC\n+>184_1\n+ACAAATCATAAATTTTTTTTTACT\n+>185_1\n+GACGAAACGCAACAACAAAATGGACG\n+>186_1\n+TACAAATTTTTTTTTCTTTCTTAT\n+>187_1\n+TACACCTCTTTTTACTTTTTTATT\n+>188_1\n+TATGGATTATTTCAAAATTTTTTTTT\n+>189_1\n+TTCTAGCACAACACGCACACATATA\n+>190_1\n+TAACTACTTTTACATTAATACTAA\n+>191_1\n+TCTCATCTTACAATTTTTTAAAACTT\n+>192_1\n+TTCTTGGACTACACATTTTTTATTGTTTTA\n+>193_1\n+TACACACTCATCAACCAAAGTACGTA\n+>194_1\n+TACTATATACTTCTTCAAATCACA\n+>195_1\n+TCAGAGTTCTACAGGTCCTACGATT\n+>196_1\n+TGATTTACTTACATTCTTTTTTT\n+>197_1\n+CCATATATGACTGACTCATTTCAC\n+>198_1\n+GAAGAGGAGGAGGAGTTTGTAAG\n+>199_1\n+AAAGACAAAAGAAATACAGGCACT\n+>200_1\n+TACAAGACTAAAACAAACGTGAAGT\n+>201_1\n+TAACGGAGCACGAGAACGAAGTGG\n+>202_1\n+CTTCTTTTACTACATATTTTTTATTTTTTTA\n+>203_1\n+TAATAAGAAACTGTTCAAACAATCCAC\n+>204_1\n+TGAGCGGAGAACCAGAGTTGATGAGC\n+>205_1\n+TATTATTTTTTTATTCCATTCATAT\n+>206_1\n+TTTATTACTTAGTCATAATTCCAA\n+>207_1\n+TTTTATATTTCCTTATATCTTTACTA\n+>208_1\n+AACGGGGAATAAGGGTTCG\n+>209_1\n+AATCTACAATTTCCATTACGACTCC\n+>210_1\n+CCGACCGAGCAAATAAACACAGGAACG\n+>211_1\n+TCCACAACAACTCTATCTAAAGCATT\n+>212_1\n+TTCTTGATAACGCATCTTCTACAT\n+>213_1\n+TGCTTGGACTACATATGGTTGAGGG\n+>214_1\n+CAGATTCACTGATTTTCTTACGCC\n+>215_1\n+TTTGTTTTTCATTTTTTTATCTTT\n+>216_1\n+CTATATTTTCTCTCTTACC\n+>217_1\n+TAACCTTGCAGAACTATACGATTCAAA\n+>218_1\n+TAAGAAACTGAGCTAACGCAATGTACC\n+>219_1\n+TTCTTTTACTACATATTTTTTATTTTTTTA\n+>220_1\n+TATCTATCTTTGATCTTCTTTTCA\n+>221_1\n+TAATAAATTATTAAATAAAAAAAAAA\n+>222_1\n+TTTTTTATCAATTTTCACCATTCAT\n+>223_1\n+TATTTCACTTTATACTTCCTTAA\n+>224_1\n+TAGTTTTAAATATTTCTTTTTTTC\n+>225_1\n+TTCTTTTACTACATATTGTTTATTTTTTTA\n+>226_1\n+GAGAATAAATATTTCAATGGTCTATTG\n+>227_1\n+CGATATTTTCTCCTCTTACCT\n+>228_1\n+CACGACTTTATTCTTTTTATCTCA\n+>229_1\n+TAGTGGACTTTAAAAAAAAAAAAAAAAAA\n+>230_1\n+CATAATATAAACTTATCTT\n+>231_1\n+ATGAAATTCGAACAATACGTC\n+>232_1\n+AACAACTGCAAACATCTACCACA\n+>233_1\n+TAAAAATAATTGTCTTTAATTTCA\n+>234_1\n+CGCAACCAGCAGCAACTCCTAGCAT\n+>235_1\n+ATTATTAATAAATTATTATAA\n+>236_1\n+CATTAATTCATCCATTTAAACTAA\n+>237_1\n+TCTTATTTTAATCTTCCAATTTC\n+>238_1\n+CTAGACAAGATGCTATAAATTTTAAA\n+>239_1\n+TGACCAAAGACAAACAAACAATAAATA\n+>240_1\n+TTTTTATCAATTTTCACCATTC\n+>241_1\n+TAAGTTTTTAATCATTTTTTTT\n+>242_1\n+TAATCAAAAAACTCTTCATTTTTA\n+>243_1\n+TACAAACGGAACTTTCGTCATAA\n+>244_1\n+TTTTCTTTTTTTCATTTTCTCTTTTA\n+>245_1\n+TAGCCTTTACTAGGCTTTTTCTAA\n+>246_1\n+TTAGTATTAATCTTCACTTAA\n+>247_1\n+TAAAATAAACCAAAACCCAAAAAT\n' |
| b |
| diff -r 000000000000 -r 951cb6b3979b test-data/output.tab --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/output.tab Sun Jun 21 14:28:49 2015 -0400 |
| b |
| @@ -0,0 +1,247 @@ +ACAGCAGGACGGTGATCA 2 +TGCTTGGACTACATATGGTTGAGTG 2 +TGGAATGTAAAGAAGTATGGAG 2 +AATTTATTTAATTTATATTCTAACTAA 1 +TTATAATCACGGCACCCTATACA 1 +TCCGAAAAATCGTAGGACCCGGGCA 1 +TCCCAACCCTCGAGCATCATTTTC 1 +TTGATTCTTCTTTTTCACAAAA 1 +AGAACAATTAAATAAAATAGCATA 1 +CCAGAAAACAATACAACATCCTCA 1 +TCTAGTCTGAGCGTAGTACCAGATTG 1 +TTTTTAACTCCCATCATTTTTCCTC 1 +GCAGATAGAAATCAATACAAAAATC 1 +AAGTGAAGAAGTAGTTTTT 1 +AATGTCACTTGAAGAATTCACGT 1 +TTTACCAGAGGAGTCGAGTTTTT 1 +GGTATCTTTATATTTTAATTTTCTT 1 +TTACTAGATCCACCCTCATTA 1 +TATATAAATCTTCAACATCAA 1 +GAAACCATTATCTTATCTTTATACA 1 +GGAGATTGTAGAACGAAAGGAAAAT 1 +ACTAAACTTTTCTTACCATATTTCTA 1 +TCAAGCCTTTTGAAGAACTGACCTAAA 1 +TAACATAAATTTTAATCATAAATTG 1 +TAGCGAGATGGACCAACGTGCTGT 1 +TACAAACGTAATTTTCGCATAACATC 1 +CGGAAAAGAATGTAGACCATTTAA 1 +GAAAGGAAGGGAAGAAAGCGAAAGGA 1 +CAAGAATACAAAAAATACTAATTA 1 +CATACCTACAAAAAAGCTTCTCTTAC 1 +TAAAATAAATAAGTCCGACGACAA 1 +AGGAATATGATGAAATAAAAAAAT 1 +TTTTTTTTTTGTTTTTATTTTTATCAT 1 +TTTTTAACTCATTTTACAATTAAAC 1 +CCGCGATCTGCTTATTTATAATCTT 1 +TAGGTACTTACCTTTTTTTTACACAA 1 +TCATTACACTTCTTACAAAAC 1 +TATTATACATAGAATAACAAATCTTT 1 +ATGTTATTTACTTTTTCCCCTTATA 1 +TCCGAAAACAAGGCCCGTCGCT 1 +TGCTTTTACTACATATTTTTTATTTTTTTA 1 +GAACAATTTTTCAATTTTTTACATTA 1 +AACATTTTATCAATTATACATTA 1 +TATCTGATCAACAATCTTTTCCCAT 1 +AATTGCAACAGAGACTGGAA 1 +TATTCAATCACTCCATTATATATAACA 1 +CAAACGGAACAAGACATCACCATC 1 +TCTTCTATATAATCCTTTATTATAA 1 +TGATGACGGGCAGCAGGGATTTTC 1 +TTTATTACAACCCTATCTTACCTCAA 1 +AACAGGAAAAACAGAAGGATTTCTA 1 +CGATATTTTCTCCTCGTACC 1 +AAATTGCAAAGATGGAAAATAAAACT 1 +TACACACTCATCAACCAAAGGACG 1 +TATATTGCCTCCCCATAATCCTT 1 +TACAAACGGAACTTTCTTCATAACTTC 1 +GGACGGAGAACTGATAATGGC 1 +TTCTTTGACTACATATTTTTTATT 1 +TCTTTTTTTTAATACTTATTTTCATT 1 +TACTTTTTTCTTAATTTTTTATTAAAC 1 +AATATAAAAATACAATCAACCATTGCA 1 +CAGTTTCACAAAAGATCTTTTAA 1 +GAAACAAACAACACATACCCTCTGGC 1 +AATGACACACTCTTCATCAAC 1 +AAGATGGAGTAGTTTTTT 1 +ACAACCTCAACTCATATTT 1 +TTAAACAATTTGGAATTAATT 1 +TACAAAAAATGCGAAAATTGACCCT 1 +GGACGGAGAACTGATAAGGGCA 1 +TTAAGTTTTAGACATAATCTATTACAA 1 +TTATTATCTATTTTAATTTTTCTTAA 1 +CACCGAACCGGGAAGGCGAACAAC 1 +TCCACCTATTTATCTTTTCTT 1 +TCGCCGTAAAGCCAGTCGTTCTCC 1 +TCAAAGAACAATGTAAAGCCGCGAC 1 +TGGACAAGAACCACGCGACGGGTGT 1 +CCCGAAAAGCCGAGGACGACTTA 1 +TTTTTTATCATTTTTCACCTAAAAAA 1 +TAGAACTCGAACCAGAGCTCC 1 +TCTATATTATTTTTATCAATTTTCACC 1 +TCTATTTCTTTATTTTTTTTATTAT 1 +TTTGATACCTTTATACCATACCTATT 1 +ATAAAGCTAGATTACCAAAGCAT 1 +GCCAACGACCATACCACGA 1 +CGGCACATGTTGAATTACACTCA 1 +TACTATTTTATTATACATACATACATTA 1 +TTAATGACACACGGGAAAAACACCG 1 +TAGTTTCACTACTTTATTCTTTTTA 1 +AACAGGGAGATCAACAGCGTTGACA 1 +CGATATTTTCTCCTCTGACC 1 +ACCAGCACCTTCCGACTCAACGTCAAA 1 +AAGGAATTAAAGCAATAATTCTAA 1 +TACAAAACAAACAAATTACAATCTAAA 1 +CAATTTTTAATTCCTTTTTTCTTCTT 1 +TACAGACAACACATACGGACTTAA 1 +TCTGTATTTGACTTATTACTTTCTCC 1 +TGAGCTAGAACTGCACCCACTCCA 1 +CGCCGCAAGATGAATACTCTAATGA 1 +TATTTCTTTTTTAACTTCTTTTC 1 +TTACAATCTACTATTCTTTTATTA 1 +TTTAAACACTTCCTACATCAAATTTC 1 +TGTGTAATCTTTCTACTTCTTCTAC 1 +TCTATTCATACAAAACACTAATACCC 1 +TGGAGTAGCACAGTCGTCTGAAATC 1 +AAGCACGCCTTACCACAATTTATAA 1 +CTGGAAACTATTGATCAAATT 1 +TACACAGACTTACAAAACACATCCTTC 1 +TTCAAGTAGATTGCATTTTTTAATA 1 +TTATTACATCGTCCACATATAACAAAA 1 +CAAGGCTCAGAAGAACATCACCAAGACC 1 +TGAGGAAAACAGAAAAATGAGAGACA 1 +TCAAAAAGTAATAGGGATCGTTA 1 +TAACTTTAACTTTTTTACT 1 +TATTCCGACAATACCTTCTTTAC 1 +TTTGTTTTTTACTATATTT 1 +TTCATTTTATTTTTAAATATCTTTTTT 1 +TACTCAATAGAACTCTACTCACTCATA 1 +TGAAAGGAAAAACAGGACACGGGA 1 +AAAATCGACTGCCGAAAACATTTTAA 1 +TACAGAGAAATATACAACACTCACC 1 +TCAACTGGCAAGAATTTTTGAAAATT 1 +GAGAACTTTTAATCATTTTAC 1 +TATTATCATCTCGTTCTTCCTTCTC 1 +TTTTCATTTCTTCTTCAAATCCTTT 1 +TAGTCATACATACCTAATTATACATA 1 +ATTTTACTTCATCATTTTC 1 +TCTCTTTTATTTTTATCTTTCCTT 1 +GCCGGGGCGTGAGATGTCTGCATTA 1 +AGGATTTTTAAGCCCATATGTTTCC 1 +CAAGATATGAACAAAGCAAAGACAC 1 +CAACACATGACGCGACAATTCTTG 1 +CAAATAACAAACTGAATAAACGAAA 1 +TGAGAATGACTTCTTCACGATCTCTT 1 +TCTTATTATCATTTTTTTATCCCTT 1 +TCAAATGCAAATTGGATTTATGA 1 +CCTTACTCAACATACTTAATCATACTTA 1 +TAGACTTTCTACTCATTATTAC 1 +TGAAACTGAAACTAACATACAAAATATT 1 +AAAACCCGGACAAACCATCGGAGGA 1 +TACAGACAACACATACGGACTTAAGT 1 +TATTTCAGCAACAGACTAAGACTAA 1 +AACTTTAAATTTTTAATAACCTT 1 +TATTTATAAATTTTTTCTTGAGAC 1 +TTAATATGTAATTTCATACCTCAC 1 +CACAGACTGAGGCAGAAAAAACAA 1 +TAAAGAAGAAGAATTGATTTTAAT 1 +TACTGAAAACGGGCGCATATCAGTGG 1 +TCAGTCTTTTTTTCTCTCCTA 1 +TATAATTTTATTTTATATTTTCTCT 1 +NATTCTTACTCCATTTCAATTTACT 1 +TTGTAAAACATTCTTTCTCCTGAC 1 +TAATTACCATTGCTAACTATCCA 1 +TTCTTCCTTTTATCCTCTCTTAA 1 +TCTAAACACCCACGAAAATCTCTTAC 1 +AAAAACACACAGACACAAGCAGCAAT 1 +CGGACGGTATATTTTTTAATATAA 1 +TATGGAGAAACAGCGATATAAGTCA 1 +TACAACTAACATCCTTTCTTCTTCC 1 +AACTCTCTAATTTAACTTTGTGC 1 +TCCTGAGGACGAGGGGCGTTTAGC 1 +TATTTCCAACCTTCAACCTCAAATAA 1 +TGGACGGAGAACTGATAAGGGC 1 +TTTAAGACTTATGAGCTTG 1 +TTAAAGACGCAACAACTAACATT 1 +TAGGAACTTCATACCGGTCTC 1 +CGATATTTTCTCCTCTTACC 1 +GAGGATTAAAAGAACGGTTTATAA 1 +GAATGATCGCACCACCACCTCAACGTT 1 +TTTTCTTTACCCATCTTTACTTTCCC 1 +AAGACAACAATGACATATAAGACG 1 +TAATAATTTAAATAAATATAAATTT 1 +TACTGAAACAAGGAAACACAAGC 1 +TCAGAAGAACAGAGAATTGATTTT 1 +CATACCTTAAATTATCTCTTTCTT 1 +TTCTTTTACTACATATTTTTTATTTTT 1 +AAAAAATATCTTTTTTAACTCGTGGCC 1 +TAACAAATAGAACGTTCTAATTTAAA 1 +TAGTTACCTTCATATCTCTCTTTA 1 +TAAAATTGTAATATTTAAATAATAT 1 +AAAAGGAAAAACAGAAAAATTGGG 1 +AGATGTTGATCTAAACTCTCCCA 1 +TACCTCTTTATTAACCTCCACCTCTA 1 +TTTCCGACAAATACACCATCTTC 1 +ACAAATCATAAATTTTTTTTTACT 1 +GACGAAACGCAACAACAAAATGGACG 1 +TACAAATTTTTTTTTCTTTCTTAT 1 +TACACCTCTTTTTACTTTTTTATT 1 +TATGGATTATTTCAAAATTTTTTTTT 1 +TTCTAGCACAACACGCACACATATA 1 +TAACTACTTTTACATTAATACTAA 1 +TCTCATCTTACAATTTTTTAAAACTT 1 +TTCTTGGACTACACATTTTTTATTGTTTTA 1 +TACACACTCATCAACCAAAGTACGTA 1 +TACTATATACTTCTTCAAATCACA 1 +TCAGAGTTCTACAGGTCCTACGATT 1 +TGATTTACTTACATTCTTTTTTT 1 +CCATATATGACTGACTCATTTCAC 1 +GAAGAGGAGGAGGAGTTTGTAAG 1 +AAAGACAAAAGAAATACAGGCACT 1 +TACAAGACTAAAACAAACGTGAAGT 1 +TAACGGAGCACGAGAACGAAGTGG 1 +CTTCTTTTACTACATATTTTTTATTTTTTTA 1 +TAATAAGAAACTGTTCAAACAATCCAC 1 +TGAGCGGAGAACCAGAGTTGATGAGC 1 +TATTATTTTTTTATTCCATTCATAT 1 +TTTATTACTTAGTCATAATTCCAA 1 +TTTTATATTTCCTTATATCTTTACTA 1 +AACGGGGAATAAGGGTTCG 1 +AATCTACAATTTCCATTACGACTCC 1 +CCGACCGAGCAAATAAACACAGGAACG 1 +TCCACAACAACTCTATCTAAAGCATT 1 +TTCTTGATAACGCATCTTCTACAT 1 +TGCTTGGACTACATATGGTTGAGGG 1 +CAGATTCACTGATTTTCTTACGCC 1 +TTTGTTTTTCATTTTTTTATCTTT 1 +CTATATTTTCTCTCTTACC 1 +TAACCTTGCAGAACTATACGATTCAAA 1 +TAAGAAACTGAGCTAACGCAATGTACC 1 +TTCTTTTACTACATATTTTTTATTTTTTTA 1 +TATCTATCTTTGATCTTCTTTTCA 1 +TAATAAATTATTAAATAAAAAAAAAA 1 +TTTTTTATCAATTTTCACCATTCAT 1 +TATTTCACTTTATACTTCCTTAA 1 +TAGTTTTAAATATTTCTTTTTTTC 1 +TTCTTTTACTACATATTGTTTATTTTTTTA 1 +GAGAATAAATATTTCAATGGTCTATTG 1 +CGATATTTTCTCCTCTTACCT 1 +CACGACTTTATTCTTTTTATCTCA 1 +TAGTGGACTTTAAAAAAAAAAAAAAAAAA 1 +CATAATATAAACTTATCTT 1 +ATGAAATTCGAACAATACGTC 1 +AACAACTGCAAACATCTACCACA 1 +TAAAAATAATTGTCTTTAATTTCA 1 +CGCAACCAGCAGCAACTCCTAGCAT 1 +ATTATTAATAAATTATTATAA 1 +CATTAATTCATCCATTTAAACTAA 1 +TCTTATTTTAATCTTCCAATTTC 1 +CTAGACAAGATGCTATAAATTTTAAA 1 +TGACCAAAGACAAACAAACAATAAATA 1 +TTTTTATCAATTTTCACCATTC 1 +TAAGTTTTTAATCATTTTTTTT 1 +TAATCAAAAAACTCTTCATTTTTA 1 +TACAAACGGAACTTTCGTCATAA 1 +TTTTCTTTTTTTCATTTTCTCTTTTA 1 +TAGCCTTTACTAGGCTTTTTCTAA 1 +TTAGTATTAATCTTCACTTAA 1 +TAAAATAAACCAAAACCCAAAAAT 1 |