| Previous changeset 5:09b8edb56d80 (2022-04-14) Next changeset 7:a819ec3b362d (2022-05-23) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 2f4c9bfc48d63075ae18a1687e8d01ffea509084 |
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modified:
macros.xml stacks_sstacks.xml |
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| diff -r 09b8edb56d80 -r 9586f08634c0 macros.xml --- a/macros.xml Thu Apr 14 09:22:31 2022 +0000 +++ b/macros.xml Wed May 11 06:51:14 2022 +0000 |
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| @@ -10,7 +10,7 @@ </xml> <token name="@TOOL_VERSION@">2.55</token> - <token name="@VERSION_SUFFIX@">2</token> + <token name="@VERSION_SUFFIX@">3</token> <token name="@PROFILE@">20.05</token> <xml name="citation"> @@ -632,4 +632,8 @@ <option value="--index_inline">@TYPE@ occurs in FASTQ header (Illumina i5 or i7 read) and is inline with sequence on single-end read (if single read data) or paired-end read (if paired data) (--index_inline)</option> </expand> </xml> + <!-- for tests that check the output for "stacks completed" --> + <xml name="test_element_stacks_completed" token_element_name=""> + <element name="@ELEMENT_NAME@"><assert_contents><has_text text="stacks completed on" /></assert_contents></element> + </xml> </macros> |
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| diff -r 09b8edb56d80 -r 9586f08634c0 stacks_sstacks.xml --- a/stacks_sstacks.xml Thu Apr 14 09:22:31 2022 +0000 +++ b/stacks_sstacks.xml Wed May 11 06:51:14 2022 +0000 |
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| @@ -114,8 +114,8 @@ </assert_command> <output name="output_log" ftype="txt"><assert_contents><has_text text="done."/></assert_contents></output> <output_collection name="matches" type="list" count="2"> - <element name="PopA_01.matches"><assert_contents><has_text text="# sstacks completed on "/></assert_contents></element> - <element name="PopA_02.matches"><assert_contents><has_text text="# sstacks completed on "/></assert_contents></element> + <expand macro="test_element_stacks_completed" element_name="PopA_01.matches" /> + <expand macro="test_element_stacks_completed" element_name="PopA_02.matches" /> </output_collection> </test> @@ -149,8 +149,8 @@ </assert_command> <assert_stderr><has_text text="done."/></assert_stderr> <output_collection name="matches" type="list" count="2"> - <element name="PopA_01.matches"><assert_contents><has_text text="# sstacks completed on "/></assert_contents></element> - <element name="PopA_02.matches"><assert_contents><has_text text="# sstacks completed on "/></assert_contents></element> + <expand macro="test_element_stacks_completed" element_name="PopA_01.matches" /> + <expand macro="test_element_stacks_completed" element_name="PopA_02.matches" /> </output_collection> </test> </tests> |