| Previous changeset 3:037c0b25c041 (2023-03-29) Next changeset 5:fc6c328c292f (2023-08-13) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/humann commit 0a3abeca0535457ddf39c394001d61cd2e45afdd |
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modified:
humann.xml macros.xml tool-data/metaphlan_database.loc.sample |
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| diff -r 037c0b25c041 -r 95bf7479d53c humann.xml --- a/humann.xml Wed Mar 29 19:59:38 2023 +0000 +++ b/humann.xml Mon Apr 24 18:59:49 2023 +0000 |
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| @@ -12,7 +12,8 @@ <when value="cached"> <param name="cached_db" label="Cached database with clade-specific marker genes" type="select"> <options from_data_table="metaphlan_database"> - <validator message="No MetaPhlAn database is available" type="no_options" /> + <filter type="regexp" column="0" value=".*(vOct22_SGB|TOY|demo-db).*"/> + <validator message="No MetaPhlAn database is available" type="no_options"/> </options> </param> </when> @@ -56,7 +57,7 @@ <xml name="nucleotide_search"> <section name="nucleotide_search" title="Nucleotide search / Mapping reads to community pangenomes" expanded="true"> <conditional name="nucleotide_db"> - <param name="selector" type="select" label="Nucleotide database" help="For locally cached databases, you need first to execute the tool to download HUMAnN2 databases"> + <param name="selector" type="select" label="Nucleotide database" help="For locally cached databases, you need first to execute the tool to download HUMAnN databases"> <option value="cached" selected="true">Locally cached</option> <option value="history">From history</option> </param> @@ -102,7 +103,7 @@ <xml name="translated_search"> <section name="translated_search" title="Translated search / Aligning unmapped reads to a protein database" expanded="true"> <conditional name="protein_db"> - <param name="selector" type="select" label="Protein database" help="For locally cached databases, you need first to execute the tool to download HUMAnN2 databases"> + <param name="selector" type="select" label="Protein database" help="For locally cached databases, you need first to execute the tool to download HUMAnN databases"> <option value="cached" selected="true">Locally cached</option> <option value="history">From history</option> </param> |
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| diff -r 037c0b25c041 -r 95bf7479d53c macros.xml --- a/macros.xml Wed Mar 29 19:59:38 2023 +0000 +++ b/macros.xml Mon Apr 24 18:59:49 2023 +0000 |
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| @@ -1,6 +1,6 @@ <?xml version="1.0"?> <macros> - <token name="@TOOL_VERSION@">3.6.1</token> + <token name="@TOOL_VERSION@">3.7</token> <token name="@VERSION_SUFFIX@">0</token> <token name="@PROFILE@">22.01</token> <xml name="edam_ontology"> |
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| diff -r 037c0b25c041 -r 95bf7479d53c tool-data/metaphlan_database.loc.sample --- a/tool-data/metaphlan_database.loc.sample Wed Mar 29 19:59:38 2023 +0000 +++ b/tool-data/metaphlan_database.loc.sample Mon Apr 24 18:59:49 2023 +0000 |
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| @@ -5,4 +5,4 @@ # - db-name # - build # - /path/to/data -#02_16_2014 MetaPhlAn2 clade-specific marker genes db_v20 /path/to/data \ No newline at end of file +#02_16_2014 MetaPhlAn clade-specific marker genes db_v20 /path/to/data |