| Previous changeset 2:1b61f7aafb61 (2018-06-12) Next changeset 4:b56922070a1b (2018-12-18) |
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Commit message:
planemo upload |
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modified:
peptideGenomicCoordinate.py peptideGenomicCoordinate.xml |
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| diff -r 1b61f7aafb61 -r 95d606bdfef7 peptideGenomicCoordinate.py --- a/peptideGenomicCoordinate.py Tue Jun 12 13:07:36 2018 -0400 +++ b/peptideGenomicCoordinate.py Sun Jun 17 04:55:42 2018 -0400 |
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| @@ -2,7 +2,7 @@ # # Author: Praveen Kumar # University of Minnesota -# +# Galaxy-P Team # Get peptide's genomic coordinate from the protein's genomic mapping sqlite file (which is derived from the https://toolshed.g2.bx.psu.edu/view/galaxyp/translate_bed/038ecf54cbec) # # python peptideGenomicCoordinate.py <peptide_list> <mz_to_sqlite DB> <genomic mapping file DB> <output.bed> |
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| diff -r 1b61f7aafb61 -r 95d606bdfef7 peptideGenomicCoordinate.xml --- a/peptideGenomicCoordinate.xml Tue Jun 12 13:07:36 2018 -0400 +++ b/peptideGenomicCoordinate.xml Sun Jun 17 04:55:42 2018 -0400 |
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| @@ -6,11 +6,13 @@ <command detect_errors="aggressive"><![CDATA[ python '$__tool_directory__/peptideGenomicCoordinate.py' '$peptideinput' '$mzsqlite' '$mapping' '$peptide_bed' ]]></command> + <inputs> <param type="data" name="peptideinput" format="tabular" label="Peptide List (without any header line)"/> <param type="data" name="mzsqlite" format="sqlite" label="mz to sqlite (mzsqlite) file"/> <param type="data" name="mapping" format="sqlite" label="genomic mapping sqlite file"/> </inputs> + <outputs> <data format="bed" name="peptide_bed" label="${tool.name} on ${on_string}"> <actions> @@ -18,6 +20,7 @@ </actions> </data> </outputs> + <tests> <test> <param name="peptide_input" value="peptides.tabular"/> |