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Commit message:
Uploaded |
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modified:
protein_prophet.xml |
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| diff -r a67a5d30bb80 -r 97f1c89cd831 protein_prophet.xml --- a/protein_prophet.xml Mon Mar 04 19:04:16 2013 -0500 +++ b/protein_prophet.xml Mon Mar 04 19:09:54 2013 -0500 |
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| @@ -3,12 +3,12 @@ <requirement type="package" version="1.1.9">galaxy_protk</requirement> <requirement type="package" version="4.6.1">trans_proteomic_pipeline</requirement> </requirements> - + <description>Calculate Protein Prophet statistics on search results</description> <!-- Note .. the input file is assumed to be the first argument --> - <command>protein_prophet.rb --galaxy $input_file -r $iproph $nooccam $groupwts $normprotlen $logprobs $confem $allpeps $unmapped $instances $delude --minprob=$minprob --minindep=$minindep </command> + <command>protein_prophet_wrapper.rb --galaxy $input_file -r $iproph $nooccam $groupwts $normprotlen $logprobs $confem $allpeps $unmapped $instances $delude --minprob=$minprob --minindep=$minindep </command> <inputs> <param name="input_file" type="data" format="peptideprophet_pepxml,interprophet_pepxml" multiple="false" label="Peptide Prophet Results" help="These files will typically be outputs from peptide prophet or interprophet"/> |