| Previous changeset 0:5d8b9dcaf17d (2014-12-19) Next changeset 2:b2ee2bef1926 (2017-02-07) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/cufflinks/cuffquant commit a1517c9d22029095120643bbe2c8fa53754dd2b7 |
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modified:
cuff_macros.xml cuffquant_wrapper.xml |
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| diff -r 5d8b9dcaf17d -r 986b63735a5e cuff_macros.xml --- a/cuff_macros.xml Fri Dec 19 12:01:59 2014 -0500 +++ b/cuff_macros.xml Wed Nov 11 12:35:31 2015 -0500 |
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| @@ -10,8 +10,8 @@ <stdio> <exit_code range="1:" /> <exit_code range=":-1" /> - <regex match="Error:" /> - <regex match="Exception:" /> + <regex match="Error" /> + <regex match="Exception" /> </stdio> </xml> <xml name="condition_inputs"> @@ -88,4 +88,4 @@ #end for </token> <token name="@HAS_MULTIPLE_INPUTS@">getattr(inputs, "__len__", [].__len__)() >= 2</token> -</macros> \ No newline at end of file +</macros> |
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| diff -r 5d8b9dcaf17d -r 986b63735a5e cuffquant_wrapper.xml --- a/cuffquant_wrapper.xml Fri Dec 19 12:01:59 2014 -0500 +++ b/cuffquant_wrapper.xml Wed Nov 11 12:35:31 2015 -0500 |
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| @@ -128,7 +128,7 @@ </param> <param name="mask_file" type="data" format="gtf,gff3" label="Mask File" help="Ignore all alignment within transcripts in this file" optional="True" /> <param name="max_mle_iterations" value="5000" type="integer" label="Max MLE iterations" help="Maximum iterations allowed for Maximal Likelyhood Estimation calculations" /> - <param name="max_bundle_frags" type="integer" value="500000" label="Maximum number of fragments per locus" + <param name="max_bundle_frags" type="integer" value="500000" label="Maximum number of fragments per locus" help="Sets the maximum number of fragments a locus may have before being skipped. Default: 500,000" /> </when> </conditional> @@ -140,7 +140,7 @@ <tests> <test> <!-- - cuffquant cuffcompare_out5.gtf cuffdiff_in1.sam,cuffdiff_in2.sam + cuffquant cuffcompare_out5.gtf cuffdiff_in1.sam,cuffdiff_in2.sam --> <param name="gtf_input" value="cuffquant_in.gtf" ftype="gtf" /> <repeat name="samples"> @@ -188,7 +188,7 @@ Cuffquant produces one output file: 1. Transcript expression values in binary format. - + ------- **Settings** |