Repository 'pirna_pipeline'
hg clone https://toolshed.g2.bx.psu.edu/repos/romaingred/pirna_pipeline

Changeset 13:98b4a5ec8e63 (2017-10-16)
Previous changeset 12:eec6ce306605 (2017-10-16) Next changeset 14:8b7000eac6a0 (2017-10-16)
Commit message:
Uploaded
modified:
piPipe.xml
b
diff -r eec6ce306605 -r 98b4a5ec8e63 piPipe.xml
--- a/piPipe.xml Mon Oct 16 03:33:55 2017 -0400
+++ b/piPipe.xml Mon Oct 16 03:34:16 2017 -0400
b
@@ -216,10 +216,10 @@
     <param name="PPPon" type="boolean" checked="true" label="PPPartners"/>
   </inputs>
   <outputs>
-    <data format="html" name="html_out" label="${tool.name}_${first_input.name}_${on_string}"/>
+    <data  format="html" name="html_out" label="${tool.name}_${first_input.name}_${on_string}"/>
 
-       <collection type="list" label="${tool.name}_fastq_outputs" name="output1">
-            <discover_datasets pattern="(?P&lt;name&gt;.*)" directory="fastq_dir" />
+       <collection format ="fastqsanger" type="list" label="${tool.name}_fastq_outputs" name="output_fastqsanger">
+            <discover_datasets ftype ="fastqsanger" pattern="(?P&lt;name&gt;.*)" directory="fastq_dir" />
         </collection>
 
   </outputs>