| Previous changeset 4:8eb1dd926f6e (2015-11-19) Next changeset 6:a5f4ec159731 (2015-11-19) |
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Commit message:
Uploaded |
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modified:
Bubblebeam_For_SAINT_wrapper.xml |
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| diff -r 8eb1dd926f6e -r 9929e63b0505 Bubblebeam_For_SAINT_wrapper.xml --- a/Bubblebeam_For_SAINT_wrapper.xml Thu Nov 19 10:26:48 2015 -0500 +++ b/Bubblebeam_For_SAINT_wrapper.xml Thu Nov 19 10:34:32 2015 -0500 |
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| @@ -1,6 +1,6 @@ <tool id="Bubblebeam_For_SAINT" name="Bubblebeam For SAINT"> <description></description> - <command interpreter="python">Bubblebeam_For_SAINT_wrapper.py $list_file $prey_file $crapome $color $label $cutoff $type $outfile $NSAF_zoom $SAINT_zoom $SAINT $NSAF \$INSTALL_RUN_PATH/</command> + <command interpreter="python">Bubblebeam_For_SAINT_wrapper.py $list_file $prey_file $crapome $color $label $cutoff $type $inc_file $ exc_file $outfile $NSAF_zoom $SAINT_zoom $SAINT $NSAF \$INSTALL_RUN_PATH/</command> <requirements> <requirement type="set_environment">INSTALL_RUN_PATH</requirement> </requirements> @@ -19,6 +19,8 @@ </param> <param type="boolean" name="label" checked="true" label="Use Labels"/> <param type="float" name="cutoff" label="SAINT Score Cutoff" help="Select a value between 0 and 1 written like 0.8." value="0.8"/> + <param format="txt" name="inc_file" type="data" label=+"List of Uniprot IDs to Include" optional="true"?> + <param format="txt" name="exc_file" type="data" label=+"List of Uniprot IDs to Include" optional="true"?> </inputs> <outputs> <data format="txt" name="outfile" label="Outfile"/> |