| Previous changeset 2:3de8a42a39f8 (2019-04-27) Next changeset 4:1d532e5664dd (2019-04-27) |
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Commit message:
Uploaded |
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modified:
scoring function/KinatestFisherScoring.R |
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removed:
scoring function/output.csv |
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| diff -r 3de8a42a39f8 -r 9ade210d19be scoring function/KinatestFisherScoring.R --- a/scoring function/KinatestFisherScoring.R Sat Apr 27 15:17:30 2019 -0400 +++ b/scoring function/KinatestFisherScoring.R Sat Apr 27 15:34:05 2019 -0400 |
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| @@ -1,6 +1,7 @@ # system.time({ -args = commandArgs(trailingOnly=TRUE) +#args = commandArgs(trailingOnly=TRUE) +#args = c("ABL","ABC","ABC","ABC","ABC","ABC","ABC","ABC","ABC","ABC","ABC","ABC","ABC","ABC") TodaysKinase<-as.character(args[1]) CharTable<-read.csv("Fisher-Char.csv", header = FALSE,stringsAsFactors = FALSE) @@ -12,19 +13,19 @@ -M6<-args[2] -M5<-args[3] -M4<-args[4] -M3<-args[5] -M2<-args[6] -M1<-args[7] -D0<-args[8] -P1<-args[9] -P2<-args[10] -P3<-args[11] -P4<-args[12] -P5<-args[13] -P6<-args[14] +M6<-as.character(args[2]) +M5<-as.character(args[3]) +M4<-as.character(args[4]) +M3<-as.character(args[5]) +M2<-as.character(args[6]) +M1<-as.character(args[7]) +D0<-as.character(args[8]) +P1<-as.character(args[9]) +P2<-as.character(args[10]) +P3<-as.character(args[11]) +P4<-as.character(args[12]) +P5<-as.character(args[13]) +P6<-as.character(args[14]) A=1 |
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| diff -r 3de8a42a39f8 -r 9ade210d19be scoring function/output.csv --- a/scoring function/output.csv Sat Apr 27 15:17:30 2019 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
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| @@ -1,21 +0,0 @@ -"FullMotifs","1","2","3","4","5","6","7","8","9","10","11","12","13","Scores","ThresholdValues","AllActive","AblActive","ArgActive","BtkActive","CskActive","FynActive","HckActive","JAk2Active","LckActive","LynActive","Pyk2Active","SrcActive","SykActive","YesActive" -"DCEQRVYPYEHIC","D","C","E","Q","R","V","Y","P","Y","E","H","I","C",0.0022522858511427,0.000325810539493378,6,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE -"SCEQRVYPYEHIC","S","C","E","Q","R","V","Y","P","Y","E","H","I","C",0.0022522858511427,0.000325810539493378,6,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE -"ACEQRVYPYEHIC","A","C","E","Q","R","V","Y","P","Y","E","H","I","C",0.00147666026341047,0.000213634279015669,6,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE -"CCEQRVYPYEHIC","C","C","E","Q","R","V","Y","P","Y","E","H","I","C",0.000777510340864064,0.000112496874207213,6,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE -"FCEQRVYPYEHIC","F","C","E","Q","R","V","Y","P","Y","E","H","I","C",0.00069919257144469,0.000101166333036066,6,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE -"DCEQRVYPYRHIC","D","C","E","Q","R","V","Y","P","Y","R","H","I","C",0.00586734160095303,0.000848312646043264,7,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE -"SCEQRVYPYRHIC","S","C","E","Q","R","V","Y","P","Y","R","H","I","C",0.00586734160095303,0.000848312646043264,7,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE -"ACEQRVYPYRHIC","A","C","E","Q","R","V","Y","P","Y","R","H","I","C",0.00384678978007467,0.000556339521071752,7,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE -"DCEQRVYPYEGIC","D","C","E","Q","R","V","Y","P","Y","E","G","I","C",0.00327622611135562,0.000473861215800341,7,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE -"SCEQRVYPYEGIC","S","C","E","Q","R","V","Y","P","Y","E","G","I","C",0.00327622611135562,0.000473861215800341,7,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE -"ACEQRVYPYEGIC","A","C","E","Q","R","V","Y","P","Y","E","G","I","C",0.00214798352976917,0.000310727091624341,7,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE -"CCEQRVYPYRHIC","C","C","E","Q","R","V","Y","P","Y","R","H","I","C",0.0020254617173963,0.000293008291262032,7,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE -"FCEQRVYPYRHIC","F","C","E","Q","R","V","Y","P","Y","R","H","I","C",0.00182143916565182,0.000263501662455362,7,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE -"CCEQRVYPYEGIC","C","C","E","Q","R","V","Y","P","Y","E","G","I","C",0.00113098418626369,0.000163632137429536,7,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE -"FCEQRVYPYEGIC","F","C","E","Q","R","V","Y","P","Y","E","G","I","C",0.00101706138156077,0.000147152075960544,7,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE -"DCEQRVYPYRGIC","D","C","E","Q","R","V","Y","P","Y","R","G","I","C",0.00853476824335272,0.00123349911217382,9,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,TRUE,TRUE,TRUE,FALSE,TRUE -"SCEQRVYPYRGIC","S","C","E","Q","R","V","Y","P","Y","R","G","I","C",0.00853476824335272,0.00123349911217382,9,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,TRUE,TRUE,TRUE,FALSE,TRUE -"ACEQRVYPYRGIC","A","C","E","Q","R","V","Y","P","Y","R","G","I","C",0.00559562771127938,0.000809059461632694,9,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,TRUE,TRUE,TRUE,FALSE,TRUE -"CCEQRVYPYRGIC","C","C","E","Q","R","V","Y","P","Y","R","G","I","C",0.00294628257897116,0.000426159741877843,9,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,TRUE,TRUE,TRUE,FALSE,TRUE -"FCEQRVYPYRGIC","F","C","E","Q","R","V","Y","P","Y","R","G","I","C",0.00264950674521472,0.000383249587048582,9,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,TRUE,TRUE,TRUE,FALSE,TRUE |