| Previous changeset 31:2f24f591631e (2017-05-31) Next changeset 33:40542bd944eb (2017-05-31) |
|
Commit message:
Uploaded 20170531 |
|
modified:
loadandplot.R macros.xml |
|
added:
._ETn_example ._example ._loadandplot.R ._plotwithscale.R ._testandplot.R ETn_example/._.DS_Store ETn_example/._Control.bed ETn_example/._DESCRIPTION.txt ETn_example/._ETn_fixed.bed ETn_example/._Recombination_hotspots.txt ETn_example/._features.header ETn_example/._regions.header example/._.DS_Store example/._Controls_regions.bed example/._DESCRIPTION.txt example/._Elements1_regions.bed example/._Elements2_regions.bed example/._Elements3_regions.bed example/._Feature1.bed example/._Feature2.bed example/._features.header.bed.txt example/._regions.header.txt |
| b |
| diff -r 2f24f591631e -r 9ae17a3d1a91 ._ETn_example |
| b |
| Binary file ._ETn_example has changed |
| b |
| diff -r 2f24f591631e -r 9ae17a3d1a91 ._example |
| b |
| Binary file ._example has changed |
| b |
| diff -r 2f24f591631e -r 9ae17a3d1a91 ._loadandplot.R |
| b |
| Binary file ._loadandplot.R has changed |
| b |
| diff -r 2f24f591631e -r 9ae17a3d1a91 ._plotwithscale.R |
| b |
| Binary file ._plotwithscale.R has changed |
| b |
| diff -r 2f24f591631e -r 9ae17a3d1a91 ._testandplot.R |
| b |
| Binary file ._testandplot.R has changed |
| b |
| diff -r 2f24f591631e -r 9ae17a3d1a91 ETn_example/._.DS_Store |
| b |
| Binary file ETn_example/._.DS_Store has changed |
| b |
| diff -r 2f24f591631e -r 9ae17a3d1a91 ETn_example/._Control.bed |
| b |
| Binary file ETn_example/._Control.bed has changed |
| b |
| diff -r 2f24f591631e -r 9ae17a3d1a91 ETn_example/._DESCRIPTION.txt |
| b |
| Binary file ETn_example/._DESCRIPTION.txt has changed |
| b |
| diff -r 2f24f591631e -r 9ae17a3d1a91 ETn_example/._ETn_fixed.bed |
| b |
| Binary file ETn_example/._ETn_fixed.bed has changed |
| b |
| diff -r 2f24f591631e -r 9ae17a3d1a91 ETn_example/._Recombination_hotspots.txt |
| b |
| Binary file ETn_example/._Recombination_hotspots.txt has changed |
| b |
| diff -r 2f24f591631e -r 9ae17a3d1a91 ETn_example/._features.header |
| b |
| Binary file ETn_example/._features.header has changed |
| b |
| diff -r 2f24f591631e -r 9ae17a3d1a91 ETn_example/._regions.header |
| b |
| Binary file ETn_example/._regions.header has changed |
| b |
| diff -r 2f24f591631e -r 9ae17a3d1a91 example/._.DS_Store |
| b |
| Binary file example/._.DS_Store has changed |
| b |
| diff -r 2f24f591631e -r 9ae17a3d1a91 example/._Controls_regions.bed |
| b |
| Binary file example/._Controls_regions.bed has changed |
| b |
| diff -r 2f24f591631e -r 9ae17a3d1a91 example/._DESCRIPTION.txt |
| b |
| Binary file example/._DESCRIPTION.txt has changed |
| b |
| diff -r 2f24f591631e -r 9ae17a3d1a91 example/._Elements1_regions.bed |
| b |
| Binary file example/._Elements1_regions.bed has changed |
| b |
| diff -r 2f24f591631e -r 9ae17a3d1a91 example/._Elements2_regions.bed |
| b |
| Binary file example/._Elements2_regions.bed has changed |
| b |
| diff -r 2f24f591631e -r 9ae17a3d1a91 example/._Elements3_regions.bed |
| b |
| Binary file example/._Elements3_regions.bed has changed |
| b |
| diff -r 2f24f591631e -r 9ae17a3d1a91 example/._Feature1.bed |
| b |
| Binary file example/._Feature1.bed has changed |
| b |
| diff -r 2f24f591631e -r 9ae17a3d1a91 example/._Feature2.bed |
| b |
| Binary file example/._Feature2.bed has changed |
| b |
| diff -r 2f24f591631e -r 9ae17a3d1a91 example/._features.header.bed.txt |
| b |
| Binary file example/._features.header.bed.txt has changed |
| b |
| diff -r 2f24f591631e -r 9ae17a3d1a91 example/._regions.header.txt |
| b |
| Binary file example/._regions.header.txt has changed |
| b |
| diff -r 2f24f591631e -r 9ae17a3d1a91 loadandplot.R --- a/loadandplot.R Wed May 31 12:33:02 2017 -0400 +++ b/loadandplot.R Wed May 31 12:39:37 2017 -0400 |
| [ |
| @@ -1,10 +1,6 @@ -if (require("IWTomics",character.only = TRUE,quietly = FALSE)) { - require(tools,quietly = FALSE) +library("IWTomics", quietly=TRUE, warn.conflicts=FALSE,verbose = FALSE) +#if (require("IWTomics",character.only = TRUE,quietly = FALSE)) { args=commandArgs(TRUE) - - for (i in seq_along(args)) { - message(args[[i]]) - } # get args names and values args_values=strsplit(args,'=') @@ -140,7 +136,7 @@ #file=outfeatures,quote=FALSE,sep='\t',row.names=FALSE,col.names=FALSE) write.table(as.data.frame(t(idFeatures(regionsFeatures))),file=outfeatures,quote=FALSE,sep='\t',row.names=FALSE,col.names=FALSE) save(regionsFeatures,file=outrdata) -}else{ - quit(save="no", status=255) - stop("Missing IWTomics package") -} \ No newline at end of file +#}else{ + #quit(save="no", status=255) + #stop("Missing IWTomics package") +#} \ No newline at end of file |
| b |
| diff -r 2f24f591631e -r 9ae17a3d1a91 macros.xml --- a/macros.xml Wed May 31 12:33:02 2017 -0400 +++ b/macros.xml Wed May 31 12:39:37 2017 -0400 |
| b |
| @@ -3,7 +3,7 @@ <xml name="requirements"> <requirements> <requirement type="package" version="3.3.1">R</requirement> - <requirement type="package" version="@VERSION@">IWTomics</requirement> + <requirement type="R-module" version="@VERSION@">IWTomics</requirement> </requirements> </xml> </macros> \ No newline at end of file |