| Previous changeset 5:688a8eccea71 (2019-01-05) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit e9c464070ad7c01b830345a550477e8dfdcac5ae" |
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modified:
mageck_macros.xml mageck_test.xml |
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| diff -r 688a8eccea71 -r 9b4f4533c9ee mageck_macros.xml --- a/mageck_macros.xml Sat Jan 05 05:49:38 2019 -0500 +++ b/mageck_macros.xml Wed Apr 01 06:15:24 2020 -0400 |
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| @@ -1,13 +1,14 @@ <?xml version="1.0"?> <macros> - <token name="@VERSION@">0.5.8</token> + <token name="@VERSION@">0.5.9.2</token> <xml name="requirements"> <requirements> <requirement type="package" version="@VERSION@">mageck</requirement> - <requirement type="package" version="3.0.1">r-gplots</requirement> - <requirement type="package" version="1.8_3">r-xtable</requirement> + <requirement type="package" version="3.0.3">r-gplots</requirement> + <requirement type="package" version="1.8_4">r-xtable</requirement> + <requirement type="package" version="3.3.0">r-ggplot2</requirement> <yield/> </requirements> </xml> |
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| diff -r 688a8eccea71 -r 9b4f4533c9ee mageck_test.xml --- a/mageck_test.xml Sat Jan 05 05:49:38 2019 -0500 +++ b/mageck_test.xml Wed Apr 01 06:15:24 2020 -0400 |
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| @@ -112,7 +112,7 @@ <option value="holm">Holm</option> <option value="pounds">Pounds</option> </param> - <param name="var_samples" argument="--variance-from-all-samples" type="boolean" truevalue="--variance-from-all-samples" falsevalue="" checked="false" optional="true" label="Estimate the variance from all samples, instead of from only control samples" help="Use this option only if you believe there are relatively few essential sgRNAs or genes between control and treatment samples" /> + <param name="var_samples" argument="--variance-estimation-samples" type="boolean" truevalue="--variance-estimation-samples" falsevalue="" checked="false" optional="true" label="Estimate variances from designated samples" help="To use, specify sample label or sample index for estimating variances, separated by comma (,). See -t/--treatment-id option for specifying samples." /> <expand macro="sort_criteria" /> <param name="remove_zero" argument="--remove-zero" type="select" optional="true" label="Remove zero" help="Remove sgRNAs whose mean value is zero in Control, Treatment, Both control/treatment, or Any control/treatment sample. Default: Both (remove those sgRNAs that are zero in both control and treatment samples)" > <option value="none" >None</option> |