| Previous changeset 4:0625db6b6e45 (2017-03-13) Next changeset 6:2aaf391798a3 (2017-03-25) |
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Commit message:
planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/NSPDK commit b'7e5cd452018ae9507c2d1cd13dd688a747550393\n' |
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modified:
NSPDK_candidateClusters.xml NSPDK_sparseVect.xml |
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added:
test-data/1.group.gspan |
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removed:
test-data/data.svector.1 |
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| diff -r 0625db6b6e45 -r 9b5fb987a484 NSPDK_candidateClusters.xml --- a/NSPDK_candidateClusters.xml Mon Mar 13 18:05:04 2017 -0400 +++ b/NSPDK_candidateClusters.xml Fri Mar 17 08:28:51 2017 -0400 |
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| @@ -1,8 +1,8 @@ <tool id="NSPDK_candidateClust" name="NSPDK_candidateClusters" version="9.2"> <requirements> - <requirement type="package" version="0.1.10">graphclust-wrappers</requirement> + <requirement type="package" version="0.1.11">graphclust-wrappers</requirement> <requirement type="package" version="0.5">perl-array-utils</requirement> - <requirement type="package" version="9.2">nspdk</requirement> + <requirement type="package" version="9.2">nspdk</requirement> </requirements> <stdio> <exit_code range="1:" /> @@ -13,7 +13,7 @@ mkdir ./SVECTOR && #for $ins in $data_svector: - ln -f -s '$ins' ./SVECTOR/ && + ln -f -s '$ins' ./SVECTOR/$ins.element_identifier && #end for NSPDK_candidateClusters.pl @@ -62,7 +62,7 @@ <param name="noCache" truevalue="-no-cache" falsevalue="" checked="True" type="boolean" label="Deactivate caching of kernel value computation (-no-cache)" help="to minimize memory usage"/> <param name="ensf" type="integer" value="5" size="5" label="eccess neighbour size factor" help="-ensf"/> - <param name="usn" truevalue="-usn" falsevalue="" checked="True" type="boolean" + <param name="usn" truevalue="-usn" falsevalue="" checked="True" type="boolean" label="Use shared neighbourhood to weight center density (-usn)" help="by default true"/> <param name="oc" truevalue="-oc" falsevalue="" checked="True" type="boolean" label=" flag to output clusters (-oc)" help="by default true"/> @@ -96,7 +96,7 @@ <test> <param name="data_fasta" value="data.fasta"/> <param name="data_names" value="data.names"/> - <param name="data_svector" value="data.svector.1" ftype="zip" /> + <param name="data_svector" value="1.group.gspan" /> <conditional name="iteration_num"> <param name="iteration_num_selector" value="false"/> </conditional> |
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| diff -r 0625db6b6e45 -r 9b5fb987a484 NSPDK_sparseVect.xml --- a/NSPDK_sparseVect.xml Mon Mar 13 18:05:04 2017 -0400 +++ b/NSPDK_sparseVect.xml Fri Mar 17 08:28:51 2017 -0400 |
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| @@ -1,6 +1,6 @@ <tool id="nspdk_sparse" name="NSPDK_sparseVect" version="9.2"> <requirements> - <requirement type="package" version="0.1.10">graphclust-wrappers</requirement> + <requirement type="package" version="0.1.11">graphclust-wrappers</requirement> <requirement type="package" version="9.2">nspdk</requirement> </requirements> <stdio> @@ -9,7 +9,6 @@ <command> <![CDATA[ - NSPDK_sparseVect.pl '$data_fasta' '$gspan_file' @@ -19,7 +18,7 @@ ]]> </command> <inputs> - <param type="data" name="gspan_file" /> + <param type="data" name="gspan_file" format="txt" label="gspan file"/> <param type="data" name="data_fasta" format="fasta" /> <param name="max_rad" type="integer" value="3" label="maximum radius " help="-R"/> <param name="max_dist_relations" type="integer" value="3" label="maximum distance relations" help="-D"/> |
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| diff -r 0625db6b6e45 -r 9b5fb987a484 test-data/1.group.gspan |
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| Binary file test-data/1.group.gspan has changed |
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| diff -r 0625db6b6e45 -r 9b5fb987a484 test-data/data.svector.1 |
| b |
| Binary file test-data/data.svector.1 has changed |