| Previous changeset 2:846a4449a50a (2014-06-25) |
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Commit message:
Uploaded |
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modified:
tool_dependencies.xml vcfannotategenotypes.xml |
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| diff -r 846a4449a50a -r 9baa80088ab6 tool_dependencies.xml --- a/tool_dependencies.xml Wed Jun 25 16:34:51 2014 -0400 +++ b/tool_dependencies.xml Mon Sep 15 14:48:52 2014 -0400 |
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| @@ -1,6 +1,6 @@ <?xml version="1.0"?> <tool_dependency> - <package name="vcflib" version="86723982aa"> - <repository changeset_revision="a6826babf644" name="vcflib_86723982aa" owner="anton" toolshed="https://toolshed.g2.bx.psu.edu" /> + <package name="vcflib" version="8a5602bf07"> + <repository changeset_revision="bffe0495cd92" name="package_vcflib_8a5602bf07" owner="anton" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> </tool_dependency> |
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| diff -r 846a4449a50a -r 9baa80088ab6 vcfannotategenotypes.xml --- a/vcfannotategenotypes.xml Wed Jun 25 16:34:51 2014 -0400 +++ b/vcfannotategenotypes.xml Mon Sep 15 14:48:52 2014 -0400 |
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| @@ -1,6 +1,6 @@ <tool id="vcfannotategenotypes" name="VCFannotateGenotypes:" version="0.0.2"> <requirements> - <requirement type="package" version="86723982aa">vcflib</requirement> + <requirement type="package" version="8a5602bf07">vcflib</requirement> </requirements> <description>Annotate genotypes in a VCF dataset using genotypes from another VCF dataset</description> <command>vcfannotategenotypes "${tag_option}" "${input1}" "${input2}" > "${out_file1}"</command> @@ -22,7 +22,7 @@ </tests> <help> -Annotates genotypes in the **First** file with genotypes in the **Second** adding the genotype as another flag to each sample filed in the first file. **Annotation-tag** is the name of the sample flag which is added to store the annotation. also adds a 'has\_variant' flag for sites where the second file has a variant. +Annotates genotypes in the **First** dataset with genotypes from the **Second** adding the genotype as another flag to each sample filled in the first file. **Annotation-tag** is the name of the sample flag which is added to store the annotation. Also adds a 'has\_variant' flag for sites where the second file has a variant. ----- |