| Next changeset 1:c5195904b225 (2015-11-09) |
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Commit message:
Uploaded |
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added:
snp_to_bed.xml |
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| diff -r 000000000000 -r 9c02f5e8e657 snp_to_bed.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/snp_to_bed.xml Wed Oct 07 15:17:51 2015 -0400 |
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| @@ -0,0 +1,15 @@ +<tool id="snp_to_bed" name="snp location to bed format" version="0.1"> + <description>removes unwanted column</description> + <command> + cat $input1 | sed '1d'| awk -F "\t" -v OFS="\t" '{print $1, $2-1, $2}'>> $out_file1 </command> + <inputs> + <param name="input1" type="data" label="input file"/> + </inputs> + <outputs> + <data name="out_file1" format="input" metadata_source="input1"/> + </outputs> + <tests> + </tests> + <help> + </help> +</tool> |