| Previous changeset 1:3b18022a7613 (2020-11-26) |
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Commit message:
"planemo upload commit 76645d5795502df941e39d519ed275ac903d60c2" |
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modified:
validate_fasta_database.xml |
| b |
| diff -r 3b18022a7613 -r 9c246c2e24ad validate_fasta_database.xml --- a/validate_fasta_database.xml Thu Nov 26 20:25:21 2020 +0000 +++ b/validate_fasta_database.xml Wed Aug 25 16:30:53 2021 +0000 |
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| @@ -1,4 +1,4 @@ -<tool id="validate_fasta_database" name="Validate FASTA Database" version="0.1.4"> +<tool id="validate_fasta_database" name="Validate FASTA Database" version="0.1.5"> <requirements> <requirement type="package" version="1.0">validate-fasta-database</requirement> </requirements> @@ -19,19 +19,18 @@ <inputs> <param type="data" name="inFasta" format="fasta" label="Select input FASTA dataset"/> <param type="boolean" name="crashIfInvalid" - label="Fail job if invalid FASTA headers detected?" - value="false"/> + truevalue="true" falsevalue="false" checked="false" + label="Fail job if invalid FASTA headers detected?"/> <param type="boolean" name="checkIsProtein" + truevalue="true" falsevalue="false" checked="true" label="Ensure that sequence is a valid amino acid sequence?" - help="Checks that sequence only contains the 20 essential amino - acids (and optional non-standard AAs), and checks that is not DNA or RNA" - value="true"/> + help="Checks that sequence only contains the 20 essential amino acids (and optional non-standard AAs), and checks that is not DNA or RNA"/> <param type="text" name="customLetters" value="" label="Optional: add one letter codes for any non-standard amino acids that you are using. " help="Anything that is not an upper case letter [A-Z] will be ignored."/> <param type="boolean" name="checkHasAccession" - label="Only pass sequences with accession numbers?" - value="false"/> + truevalue="true" falsevalue="false" checked="false" + label="Only pass sequences with accession numbers?"/> <param type="integer" name="minimumLength" label="Minimum length for sequences to pass" value="0"/> @@ -44,6 +43,7 @@ <!-- test general filtering --> <test> <param name="inFasta" value="fastaFilteringTest_IN.fasta"/> + <param name="checkIsProtein" value="false"/> <output name="goodFastaOut" file="fastaFilteringTest_OUT1.fasta" /> <output name="badFastaOut" file="fastaFilteringTest_OUT2.fasta" /> </test> |